KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112216675
Entry
112216675         CDS       T05605                                 
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
  KO
K08775  breast cancer 2 susceptibility protein
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440  Homologous recombination
otw03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:otw00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    112216675 (brca2)
   03460 Fanconi anemia pathway
    112216675 (brca2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:otw04121]
    112216675 (brca2)
   03036 Chromosome and associated proteins [BR:otw03036]
    112216675 (brca2)
   03400 DNA repair and recombination proteins [BR:otw03400]
    112216675 (brca2)
Ubiquitin system [BR:otw04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    112216675 (brca2)
Chromosome and associated proteins [BR:otw03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Other centrosome duplication proteins
     112216675 (brca2)
DNA repair and recombination proteins [BR:otw03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA complex
     112216675 (brca2)
   FA (Fanconi anemia) pathway
    Downstream FA components
     112216675 (brca2)
SSDB
Motif
Pfam: BRCA-2_helical BRCA-2_OB3 BRCA2 BRCA-2_OB1 BRCA2DBD_OB2 Tower BRCA2_TR2
Other DBs
NCBI-GeneID: 112216675
NCBI-ProteinID: XP_024232400
Position
LG17:85198..121358
AA seq 2840 aa
MDIRRNMFDAFKDQIWEELGPLNPNWFEELTAKASSRDWGDTEKDNPSTAISCGQDVSFK
TPLWKCPLDGEMFSTLKIFRQRRPQSPETLIEDAVFFPAQGTSATEKMDTSPCLFGKSID
GGTPSKSYRTRLHGDSFGLLDTPKHSTQAHSAKRISESLGAQLDPDMSWTSSLNTPVMSP
TIILTKSEEHSPMCPVRIATEEQVMFVRKLFPSAKESRSTMLSPEQNDRPLCQHNGLDSH
LPGVIDISPGFQDTLPGDSGSHWKQTLPDAIEDGEICSTMTGVLDGAEDVLSIFFSNKSL
ALQRVKTNERIKRKQSGATKEHVPTSTTEHDKVSSERAGEYQHTRETSEPLESRTDMKSG
DLATSQWTPINVPNFSDYDMDSFHDEGSTFRDFTGSQQPDRGSSKHTVQVESALSRRTLP
CTSQPEGSQLTGSVVESSLEHTFPRKTRTFVYCVQNPLLSVQEKYVTQMLPASPGTAPRG
ENQNMKQSKTIPDEAEFNNLNKTALDGKKPLVQKSANEENIVSQAPTKDPDLDMSQLCRV
FAQDFSQVIDYSQPCSKRADAIKNGFSASACLSAMRLRNRKLLNRLEWGQKPEHFNSGIS
DEMHIPGSQFSNSANTSRMKSTVCDSGFPPSTLSDVTQTESSNVHPSSEKSYGNQSSQGF
KTGNNWIISLPPEAIKKAKASFDDLIEENMTDVVTAASEVKPVLSCVTGSRLSTEVKFIS
PLNIAKRSKQTSVKLNGQVHVPTHQSINVSVSSHPGSGSKMASNKKIHFFSANLEKDEDL
FKEIEDEIPAVNIPEISLPEEGNMSCGLELVDGSHLPPLLYTHQRSVNSQGPLTASQRAD
VSELCSLLEAADSQFEFTQFKPAKLNFYVPDGSPPRQSEKELDPDFLTGIDFDDSFNSDV
EKQSVKMVTPDKKTTISHCKEICQVTTTKIKSSGASSSNSREKSKEHVIHRRVLYIPSYS
SENIAEHSFGLLTKSTNKNHLLDMDTNTSGMECERKNLPKLDVGFKTAGGNAMIVSEKCL
SKARALFADFEEKNCVPKCAVKNTEQVEISPVQYRGEVDTHVDSNVTHFHGPEKKVDLKE
PHDENIDKIKVDFTHSHTHGDGGFQTARGKGVTISAKALQKTNAVFKDCDAMESSGCASE
KLSKTSVLLNKTGSNNFERNNCGFSTARGKRLDVSAKSLLTLLNDCDELENSKPGKIPSL
NAKIPSQNIQQKSDCDFKKPSIKAASISARIPFTAKTPFDSGMSHDVLGAKSKMLEPENS
QTHAKDPLKNGCGFSTASGKRVSVSEGALLKAQALLSECHVDGEELSKSKKKIRVDLHNP
TQKHSGFKTAGVKEVTVSPKAHRQAQALFNNCDFNMDSLISAETKQGNTDVKSADGLMNN
PGKSYCAFMTAGGENVHVSEKGILKAKSILNENLDNCTDSNAIEEAWFSDGRFLLLTEDG
TGVKKGARNKSNYSDLNGDEKSCDFSTAGGKTVHMSDGALQKAKSILNECDVIENPQPEN
GHNVHLEKIPTKETHEISHGSAASGKGVFISEKVLQHVKSVYVLGETGNVKYSVGSNPVG
SHFGFSTASGKGLSVSEKALQEACDDTLARDTDPHKRSEENRPLKVPSPHINVQRVPVKA
VRLEEVIQTIVGMECNSSSVECQAASSLLNFESLGFSGCSVTQRRYFAQEAMDCTKALLE
DEDLTDHCPGTPIQANPMSCKGGFEMRSGIGKRSAEDLGMTDQPPLKRKLLTKFDRTVDC
FRRSKLTPAKSSSDGIFKDRRVFKYNVALQPNVTRPYRANPRCVDTRLNKPEPQKTTSDP
TAEDRKPVSSKTAVFVPPFRKNVKLEPQGSSGLQDKTRAPGVFVSPFLKNNRLTREGSFK
PSEDNHSPFISEMPTKTTSVPLPEYNPITDTGSDNAKESIKEQDPQNIDKTDRGDDCGHC
LPVTLGGEDATAEESIAGQLAPDATGTLLDVVYECLQLARDMQDMRIRKKKRQTIRPLPG
SLYLAKTSGVARLTLREAVGGWHPVQHTHKQLYGYGVHRHVWDISSESAEAFRFVCRHYF
RREAFVEGCIQLADGGWLIPRNDGTAGKHEFHRALCDSPGVDPKLISEDWVFNHYRWVVW
KRACMERAFPEVMGSLCLTPEQVLLQLKYRYDLEVDNSKRSALRKIMERDDTAVKTLVLC
VCGVVTKGHNPTRQSWSETKTKTPPGSAAGSKAKSSPVGLIWLTDGWYAIKAQLDVPLTT
MLHRGRLAIGGKVLVHGAELVGSQDACSPLEAPDSLMLKIGANGTRAARWYTRLGFYSNP
SPFLLPLSSLYSNGGPVGCVDIVVLRSYPTQWMEKKSDGGFVFRTGRAEEREARRHGNAK
HRAMEILFAKIQAQFEKEEDVTKPFPPTEHHPTVCGKPRGRRRTLRGRDIETLLDGEELY
DAVENDPVYLEGRLSEQQREALNSYRRCVGERRQEALQERFRQALESTQEGEGRSCHNRD
VTPIWKLSIADSRAKPGSNAVYLLNIWRPSMDLQSLLKEGCRYRAYQLSTSEGKKRAGNT
SIQLTATKKTQFQNLQASAGWLSEIFQAREAVGFRVLLNRDLKPLCGEVDLVGYVISITD
RQGPSPVVYLVDGWLDFVKVRCCSSLVQQGLEEVVKPLALVALSNLQLRAHPSSPTPIRS
AIPGLYAGDLVSFSTNPKEPHLQEAAAQLRTLVQGQEHFFSTAEERLSNLVQVSVQCLPP
LPWKADAKPDSRTTMTPQQSVRSVGPFTPLNSVVPPPPACFSGGDNKDPKSLKRKRGLDY
LCRIPSPPPLCPLGTMTLPSPCVNKTFNTPRRAETHRILKTPLAPAPQHVHLPLEDEWVE
DEELVMIDTQALHDGIERDT
NT seq 8523 nt   +upstreamnt  +downstreamnt
atggacataaggagaaacatgtttgatgctttcaaggatcaaatatgggaagagttggga
cctctgaacccaaactggtttgaagagctcactgctaaagcttccagtcgggattggggt
gatacagagaaagataatcccagtactgcaatatcttgtggacaagatgtcagtttcaaa
acaccattgtggaaatgtccccttgatggtgagatgttctctaccctgaagattttcagg
cagagaagaccacagtctcctgagacattgatagaagatgcagtgttttttcctgctcaa
ggaacctctgcaactgaaaaaatggacacaagcccatgcttatttggaaaatcaatagac
ggcgggacccccagtaaatcctatagaacaaggctgcatggagacagttttgggctgctt
gacacaccgaaacactctacgcaggcacactctgccaaacgtatatctgaaagtcttggt
gcacagttagaccctgacatgtcctggaccagttctctcaatacacctgtcatgtcgccc
accataattttgactaaaagtgaggagcatagtcctatgtgcccagtaagaattgctacc
gaagagcaggttatgtttgtgcgaaagcttttcccttcggccaaggagtctagaagcaca
atgctgtcaccagaacagaatgatagacctctctgtcaacacaatggactggattcccac
ttgcctggtgtgattgacatctcccctggctttcaagacacgttacctggtgacagtggc
agccattggaaacagactttaccagatgctattgaggacggagaaatctgcagcacaatg
accggtgtcctagatggagccgaggatgtcctctccatattcttcagcaacaaaagtttg
gctttacaacgggtgaagaccaacgagagaatcaaaaggaagcaaagtggcgcaactaag
gaacacgtacctacttctacaacggaacatgacaaagtatccagtgagagagcaggagaa
taccaacacaccagggaaacatctgagcctcttgagtccaggactgacatgaagtctggg
gatttggcgacttctcagtggactccaataaatgtacctaacttttcagactatgatatg
gattcatttcacgatgaggggtctacattccgtgacttcactggaagccagcagccggat
cgtggttcctctaagcacactgtccaggtggagtctgctctttccagaagaacattacca
tgcaccagccagccagagggatctcaattgacagggtctgtagtcgaaagctctctagaa
cacacctttcccaggaaaacaaggacatttgtttactgtgtccaaaatccacttctgtca
gtgcaagagaaatatgttactcagatgttacctgcatcacctggaactgctcccagaggt
gaaaatcagaacatgaaacaaagtaaaaccataccagatgaagctgagtttaataatctt
aacaaaactgcattggatgggaaaaagccgctagttcagaaaagtgcaaatgaagaaaat
attgtttcacaagcaccaaccaaagaccctgatcttgatatgtcacagctttgcagggta
tttgcgcaagattttagccaagtaattgactacagtcaaccatgcagcaaaagagcagat
gctattaaaaatggcttctctgcatcagcttgtctctcagcaatgagactaaggaacaga
aaactgttgaatagactagaatggggtcagaaacctgaacattttaactctggcatcagt
gatgaaatgcatattcctggttctcagtttagcaactctgcaaacacatctagaatgaag
agtacagtgtgtgatagcggcttccccccctccaccctttctgatgtcacacaaacagaa
tcatccaacgttcaccctagctctgaaaaaagttatggaaatcaatcatctcaagggttt
aaaacgggtaacaactggattatctctttgcctccagaagcaataaagaaagcaaaagca
tcattcgatgacttaattgaggaaaatatgactgatgttgttactgctgccagtgaagtg
aaacctgtgttgtcatgtgtgacaggaagccgactgtccacagaagtgaagttcattagt
ccactcaacattgccaaaaggtcaaagcaaaccagcgtaaaattgaatggtcaagttcat
gttccgacccatcagagcatcaatgtttcggtttcctcacaccctgggtctggttccaaa
atggcctccaataagaagatacattttttttcagcaaatctggagaaagacgaggatctg
tttaaggagattgaggatgaaatacctgcagtcaatattcctgagataagccttcctgag
gaaggtaacatgtcatgtggattggagcttgttgatggatctcatttaccacctctactc
tatacacaccagaggtctgttaatagccaaggtccattgacagcctcacagagagctgat
gtttcagaattgtgcagtctcttagaagctgcagacagccaatttgagttcacacagttt
aaaccagcaaagctgaacttctatgttccagatggtagtccccctcgtcaatctgagaaa
gaattggatcccgactttctcacaggcatagatttcgatgacagtttcaactctgatgtt
gagaagcaatctgtgaagatggtcacccctgacaaaaagacaactatttctcattgcaag
gaaatttgtcaagtaacaaccaccaaaattaaatctagtggggcatcatccagcaattca
agagagaaatccaaagaacatgttatccacagaagagtactttacattcccagttatagc
tctgaaaacatagctgagcattcctttggtttgttgacaaaatccacaaacaagaaccat
ctactcgatatggatacgaacaccagtggaatggagtgtgaacgcaaaaatctccccaag
ttggatgtgggttttaaaactgctggcggaaatgctatgatagtttcagagaagtgtctg
agcaaagcaagggccttgtttgcagattttgaggaaaaaaactgtgtacccaagtgtgca
gtaaaaaatacggaacaagttgaaatttcacctgttcaatatagaggcgaagttgacaca
catgttgattcaaatgtgacacattttcatggccctgaaaagaaagtagatctgaaggaa
ccacatgatgaaaacattgacaagattaaagtggactttacacattctcacacacatggg
gatggtggtttccagacagcccgtggtaaaggagtgaccatctcggcaaaggcccttcaa
aaaaccaatgcagtcttcaaagactgtgacgctatggaaagttcaggttgtgcatcagaa
aagctgagcaaaacaagtgttttgctcaacaagactggcagtaataattttgagagaaac
aattgtggcttcagcactgctcgagggaagagacttgatgtttctgcaaaatctctactg
actctcctgaatgactgtgatgaattggaaaattctaagccagggaaaatccccagcttg
aatgcaaagataccaagtcagaatattcagcagaaaagtgactgtgattttaagaaaccc
agtattaaagcagcctccatatcagcaaggatcccttttacagcaaaaactccatttgat
agtggcatgtcacatgatgttctaggggcaaagagcaaaatgcttgaaccagaaaattct
caaacccatgctaaagatcctttgaaaaatggatgtgggttcagcactgccagtggtaaa
agagtgtctgtgtcagaaggggcgctattgaaagcacaggctcttttgagtgaatgtcat
gtagatggagaggaactttctaaatcaaagaaaaagatcagagtagatcttcataaccca
acacagaagcacagtggatttaagactgctggtgtcaaagaagttaccgtatcacctaag
gcccataggcaagcacaggctcttttcaacaactgtgatttcaatatggacagcttaatc
agtgctgaaacaaagcaagggaatacagacgtaaagtctgctgatggtctgatgaacaat
ccagggaaaagctattgtgccttcatgacagctggtggagagaatgtgcatgtatctgaa
aaaggtattttgaaggcgaagagcattctgaatgaaaaccttgataactgcacagactca
aatgccattgaggaggcttggttttcagatggtagatttttgttactcactgaagatggt
acaggtgtcaaaaaaggagcaaggaacaaatcaaattattctgacctcaacggggatgaa
aagagctgtgatttcagcactgccggggggaagactgtgcatatgtccgatggagcactc
cagaaagcaaagtctattctgaacgaatgtgatgtaattgaaaatccacaacctgagaat
ggccacaatgtgcatctggaaaagattccaacaaaggaaacgcatgaaatctctcatggt
agtgcagccagtgggaaaggggtgtttatttcagaaaaggttcttcagcatgtgaagtct
gtgtacgttctgggtgagactggtaatgtaaaatattcagttggcagtaatccagtcgga
agccattttggttttagcacagccagtggtaaaggactgtctgtttcagagaaggcactt
caagaagcgtgtgatgatacccttgccagggatactgaccctcacaaaagatctgaagaa
aataggccactgaaggtcccttctccccatattaatgttcagcgtgtgccggtcaaagca
gttcgacttgaggaagtgatccagaccattgttggaatggaatgtaattcttcatctgta
gaatgtcaagcggcgtcttccttgttaaattttgaatcccttggattcagtggctgctct
gtgacccagaggaggtactttgcccaggaggccatggattgtaccaaggctcttttagag
gatgaagacttgaccgatcattgtcctggaacaccaatccaagctaaccccatgtcctgc
aaggggggttttgagatgagaagtggaattgggaaaaggtcggcagaggatttagggatg
acagaccagcctcctctgaaaagaaaactcttgaccaaattcgacagaactgtggattgt
tttcgacggtcaaaactcactccagctaaaagcagttcagatggtatatttaaagacagg
agagtcttcaaatataatgtggctcttcaacctaatgtcacgaggccatatcgcgctaat
ccgagatgtgtagacacaaggctgaataagcccgagccacagaagacaacgtcagatcca
actgccgaagaccgtaaaccagttagctccaagaccgctgtatttgtccccccattccgg
aagaatgtcaagcttgagccacaggggagcagtggtcttcaggacaagactagagcgcct
ggtgtgtttgtttccccgtttctaaaaaacaaccgcttaaccagggagggttcctttaag
ccttcagaagataatcattctcccttcatctctgaaatgcctaccaagaccacatctgtt
ccacttcctgagtacaaccccatcactgacactggtagtgataacgcaaaggagtccatt
aaggaacaggacccacaaaatattgacaaaacggaccgaggtgatgattgtggccattgc
cttcctgtcaccctaggaggagaggatgccactgcagaggagtctattgcaggtcagcta
gcccctgatgccaccggtacccttctagacgttgtttatgagtgcttgcagcttgcccga
gacatgcaggacatgaggatcaggaagaagaagcggcagaccattagacctctccctggc
agcctgtacctggccaagacatctggggtggccaggctgaccctcagggaggccgttgga
ggttggcaccctgtacaacacacacacaaacagctgtatggctatggagtgcaccggcat
gtttgggatatcagcagtgagagtgctgaggcgttccgctttgtttgccgacactacttc
agacgcgaggcgtttgtagaggggtgcattcagctggccgacgggggctggctcattcct
cgcaacgatggaactgcagggaaacatgagttccacagagcattgtgtgacagccctggc
gtggaccccaagctgatcagtgaggactgggtgttcaaccactaccgctgggtggtgtgg
aaacgggcctgcatggagagggcattcccagaggtgatgggcagcctctgtctcacacca
gaacaggtgctcctacaactgaaatacaggtacgacttggaggtggacaacagcaagagg
tcagctctaaggaagatcatggagagagacgacacggcagtcaagaccctggtgctttgt
gtatgtggtgttgtcaccaaaggccataacccaacaaggcagagctggagtgagaccaag
accaaaaccccaccagggagcgccgcagggtctaaagcgaagtcgtcccctgtaggcttg
atctggctgacggatggctggtacgccatcaaggcccagctggacgtcccactgaccacc
atgctccaccggggccgcctggcgattgggggaaaggtgctggtccacggggccgagttg
gtgggatctcaggatgcctgctccccactagaggctcccgactccctcatgttgaagatt
ggggccaacggcaccagagcggcgcgttggtacaccaggctagggttctacagcaaccct
agtccattcctcctccccctctcctccctctacagcaacggaggccccgtgggctgtgtg
gacattgtggtgctgaggagctaccctacccagtggatggagaagaagtcggatggaggg
tttgtgttccgcacaggccgtgcagaggagagggaggcacggcgtcatggcaacgccaaa
cacagagccatggagatactgttcgccaagatccaggcccagtttgagaaggaggaggat
gttacaaaaccttttccgcctactgaacatcacccaacagtttgcggtaaacccagaggc
cggagacggaccctgcgtggtcgagacattgagacactgctggacggggaggagctgtac
gacgcggtggagaatgacccagtttatttggagggccgtctgagtgagcagcaacgggag
gcgttgaacagctataggcgttgtgttggtgagaggaggcaagaggcactgcaggagcgg
tttcgccaggctctggaaagcacccaggagggcgagggcaggagctgtcacaaccgagac
gtgacccccatctggaagctcagcattgctgactccagggccaagccgggcagcaatgca
gtgtacctgttgaatatctggcgcccctccatggatctgcagtccttgctgaaggaaggc
tgtcgatacagggcctaccaactatctacgtcggagggcaagaaacgagccggtaatacc
tccattcagctcaccgccaccaagaaaacccagttccagaatttacaggcttctgcaggg
tggttgtctgagattttccaagcccgagaggcggtcggctttcgcgttctcctgaaccgg
gacttaaagccactctgtggagaggtggatctggtaggctacgtcatctccatcacagac
agacaaggtccctctccagtggtgtatctagtggatggctggctggactttgtcaaggtg
cgctgctgcagcagtctggtccagcagggcttggaggaggtggtcaagcctctggctctg
gtggccctcagtaaccttcagctcagagcccatccctcctcccccacccccatccgcagc
gccatccctggcttatacgctggagatctagtctcgttttccaccaaccctaaggagcca
catctacaggaggctgctgctcaactcaggacccttgtccagggccaggaacacttcttc
agcactgcagaggagaggttatctaacttagtccaggtgtctgtccagtgtcttcctccg
ctgccatggaaagcagatgccaaaccagattcaaggactactatgacaccccagcagtca
gttcgaagcgttggccccttcacccctctgaacagcgtcgtcccccctccacccgcctgc
ttctccgggggggacaacaaagaccccaagagcttgaaaagaaagaggggcctggactac
ctgtgtcgcatcccctctccccctccactctgccccttgggcaccatgacattaccctcg
ccgtgcgtcaacaagaccttcaacacccctcgcagggctgagacccaccggatcctaaag
acacctctggcccccgctccacagcatgtccacctgcccctagaggatgagtgggtggag
gatgaagagctggtcatgattgacactcaggccttacacgatggcatagagagagacacg
tga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (11)   
   RefSeq(pep) (11)   
DNA sequence (11)   
   RefSeq(nuc) (11)   
Protein domain (7)   
   Pfam (7)   
All databases (32)   

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