KEGG   Candidatus Paraluminiphilus aquimaris: E0F26_04365
Entry
E0F26_04365       CDS       T09832                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
paqm  Candidatus Paraluminiphilus aquimaris
Pathway
paqm02024  Quorum sensing
paqm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:paqm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    E0F26_04365
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    E0F26_04365
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:paqm03019]
    E0F26_04365
   03036 Chromosome and associated proteins [BR:paqm03036]
    E0F26_04365
Messenger RNA biogenesis [BR:paqm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     E0F26_04365
Chromosome and associated proteins [BR:paqm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    E0F26_04365
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: UZP74020
Position
949958..950200
AA seq 80 aa
MSKGQTLQDPYLNALRKERVQVSIYLVNGIKLQGQIESFDQFVVLLKNTVSQMVYKHAIS
TVVPARNVRIPIAANEEEAA
NT seq 243 nt   +upstreamnt  +downstreamnt
atgtcaaaagggcaaacgctacaagacccttacctcaacgcactcagaaaagagcgcgtt
caggtatccatatacctcgtaaacggcatcaagcttcaaggccaaatcgagtcgttcgat
caatttgtcgtgctgctcaaaaacaccgtttcgcaaatggtgtacaagcacgctatctca
actgtggtccccgcacgcaatgtacgtatccccatcgcggcgaacgaggaagaggctgca
taa

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