GenomeNet

Database: Pfam
Entry: Anti-TRAP
LinkDB: Anti-TRAP
Original site: Anti-TRAP 
#=GF ID   Anti-TRAP
#=GF AC   PF15777.8
#=GF DE   Tryptophan RNA-binding attenuator protein inhibitory protein
#=GF AU   Eberhardt R;0000-0001-6152-1369
#=GF SE   Jackhmmer:O31466
#=GF GA   32.00 32.00;
#=GF TC   32.00 32.90;
#=GF NC   31.90 31.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   Tryptophan_operon_leader
#=GF RN   [1]
#=GF RM   11557884
#=GF RT   Inhibition of the B. subtilis regulatory protein TRAP by the
#=GF RT   TRAP-inhibitory protein, AT.
#=GF RA   Valbuzzi A, Yanofsky C;
#=GF RL   Science. 2001;293:2057-2059.
#=GF RN   [2]
#=GF RM   11786553
#=GF RT   The anti-trp RNA-binding attenuation protein (Anti-TRAP), AT,
#=GF RT   recognizes the tryptophan-activated RNA binding domain of the
#=GF RT   TRAP regulatory protein.
#=GF RA   Valbuzzi A, Gollnick P, Babitzke P, Yanofsky C;
#=GF RL   J Biol Chem. 2002;277:10608-10613.
#=GF RN   [3]
#=GF RM   11566976
#=GF RT   Posttranscription initiation control of tryptophan metabolism in
#=GF RT   Bacillus subtilis by the trp RNA-binding attenuation protein
#=GF RT   (TRAP), anti-TRAP, and RNA structure.
#=GF RA   Babitzke P, Gollnick P;
#=GF RL   J Bacteriol. 2001;183:5795-5802.
#=GF RN   [4]
#=GF RM   20138150
#=GF RT   Bacillus licheniformis Anti-TRAP can assemble into two types of
#=GF RT   dodecameric particles with the same symmetry but inverted
#=GF RT   orientation of trimers.
#=GF RA   Shevtsov MB, Chen Y, Isupov MN, Leech A, Gollnick P, Antson AA;
#=GF RL   J Struct Biol. 2010;170:127-133.
#=GF DR   INTERPRO; IPR031538;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF SQ   22
#=GS A0A494WUP3_9FIRM/1-64   AC A0A494WUP3.1
#=GS A0A259U582_9FIRM/1-51   AC A0A259U582.1
#=GS A0A5B9W1S5_9BACT/1-55   AC A0A5B9W1S5.1
#=GS Q65NU7_BACLD/1-52       AC Q65NU7.1
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 G; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 i; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 3; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 8; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 c; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 k; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 7; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 F; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 a; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Y; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 h; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 M; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 C; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ D; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 f; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 B; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 U; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 g; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 S; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 9; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 l; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 2; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 b; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 E; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Q; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 J; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ C; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 X; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 H; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 5; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ B; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 L; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 1; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 R; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 O; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 6; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 m; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 V; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 4; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 I; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 N; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 e; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 Z; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LCZ A; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 D; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 A; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 T; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 P; 1-52;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 K; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 W; 101-152;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 d; 201-252;
#=GS Q65NU7_BACLD/1-52       DR PDB; 3LD0 j; 201-252;
#=GS A0A1I7FEY9_9BACL/1-70   AC A0A1I7FEY9.1
#=GS A0A328AIP6_9CAUL/11-65  AC A0A328AIP6.1
#=GS A0A2N5MCQ3_9BACI/2-35   AC A0A2N5MCQ3.1
#=GS D4Z607_SPHJU/1-64       AC D4Z607.1
#=GS RTPA_BACSU/1-52         AC O31466.1
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 I; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 M; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 F; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 A; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 J; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 G; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 J; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 K; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 D; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 J; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 I; 5-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 H; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 O; 1-51;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 L; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 I; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 F; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 B; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 A; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 E; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 D; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 B; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 N; 36-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2BX9 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2KO8 C; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 H; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP8 G; 1-52;
#=GS RTPA_BACSU/1-52         DR PDB; 2ZP9 H; 1-51;
#=GS A0A6I4U556_9SPHN/19-80  AC A0A6I4U556.1
#=GS A0A348AHL2_9FIRM/2-51   AC A0A348AHL2.1
#=GS A0A0D1V099_ANEMI/1-62   AC A0A0D1V099.1
#=GS A0A270BB68_9SPHN/24-74  AC A0A270BB68.1
#=GS A0A4R2NPX8_9BACL/1-58   AC A0A4R2NPX8.1
#=GS A0A0M4G9N5_9BACI/1-52   AC A0A0M4G9N5.1
#=GS A0LL54_SYNFM/1-59       AC A0LL54.1
#=GS A0A081NVR9_9BACL/1-50   AC A0A081NVR9.1
#=GS A0A259USK8_9FIRM/1-50   AC A0A259USK8.1
#=GS A0A402BW72_9FIRM/1-51   AC A0A402BW72.1
#=GS A0A1W2EBJ9_9FIRM/2-50   AC A0A1W2EBJ9.1
#=GS A0A517DT30_9FIRM/2-50   AC A0A517DT30.1
#=GS A0A1G9MXL8_9FIRM/1-50   AC A0A1G9MXL8.1
A0A494WUP3_9FIRM/1-64              maniddl-----LGKLEVPCQACKGEGYIGGV.............DDDG.MI.....HenvCPECRGKKYMPSEVGRKLLDFIRKYL-c...
A0A259U582_9FIRM/1-51              .mgtnlt--------LEETCTACKGLGKIGTK.............----.--.....P...CQNCQGTGTVLNEAGKKILNYLR----nsir
A0A5B9W1S5_9BACT/1-55              ...mefv-------DIYVPCPLCEGHGRLPER............aSVPR.TR.....T...CPECDGSGLRPTSEGRVILDLLK----vt..
Q65NU7_BACLD/1-52                  .......MV-IATDDLETTCPNCNGSGREEPE.............----.--.....P...CPKCSGKGVILTAQGSTLLHFIKKHLN....
#=GR Q65NU7_BACLD/1-52       SS    .......---S-HHHHEEE-TTTTTSSEETTE.............----.--.....E...-TTTTTSSEEE-HHHHHHHHHHHHHHT....
A0A1I7FEY9_9BACL/1-70              .......MT-IALDDLEQRCWECNGSGRVPAVdgertagerndgeRIDG.ER.....V...CPKCGGKGVVLTALGQTLLDFIRRHL-....
A0A328AIP6_9CAUL/11-65             .....pt---LALMDLERRCEACSGHGFVRVA.............--GR.PL.....D...CEVCEGRGAIATEAGRRVLDFLRR---ya..
A0A2N5MCQ3_9BACI/2-35              ....leg-------------------------.............--NT.NV.....P...CKNCDGKGTIPTAEGQQLLDFINK---ys..
D4Z607_SPHJU/1-64                  ....msg-TDSGLPELEEPCDACNGTGDAPPAt..........pyEPRA.SL.....N...CPKCKGHKLAPTEAGQKLIEFIKRRFN....
RTPA_BACSU/1-52                    .......MV-IATDDLEVACPKCERAGEIEGT.............----.--.....P...CPACSGKGVILTAQGYTLLDFIQKHLN....
#=GR RTPA_BACSU/1-52         SS    .......---S-GGGTEEE-TTTTTTSEETTE.............----.--.....E...-TTTTTSSEEE-HHHHHHHHHHHHHTT....
A0A6I4U556_9SPHN/19-80             ...erve------PQLYRECEKCGGSGTFNES.............EKRGsSMtfshgP...CPDCESIGAIPTDEGARVLDLIRR---wr..
A0A348AHL2_9FIRM/2-51              ...dkri-------NLEKECMRCQGAGKIDGK.............----.--.....T...CAACEGKGTVLTEEGKKILEYLRN---sir.
A0A0D1V099_ANEMI/1-62              .......MSIIAMDDLEHACWECNGKGEIPSDse.........vhEGNE.MM.....S...CPKCDGKGYIPTALGQTILGFVKRHL-....
A0A270BB68_9SPHN/24-74             ....prp----RTGDLDVICPVCAGYGQWNSQid........fvsQRSI.RV.....P...CPKCDGRGWIETG--------------ad..
A0A4R2NPX8_9BACL/1-58              ..msntv---FTTDELEMPCPECKGKGEIVSH.............--GK.ST.....S...CTKCEGKGVIMTGLGQTLLHFVKKHL-....
A0A0M4G9N5_9BACI/1-52              .......MV-LATDDLEITCPSCKGTGEGDAA.............----.--.....P...CEKCSGKGVILTGQGNTLLHFIKKHLN....
A0LL54_SYNFM/1-59                  .......MVRMRLPELETKCWMCWGSGKIASE.............DHGG.GM.....E...CPECGGVGWLPTADGRRLLDFVQRHLG....
A0A081NVR9_9BACL/1-50              ......m---ISMDDLEITCPECNGKGESEGT.............----.--.....P...CKKCDSKGVILTSLGQTLLYFIKKH--t...
A0A259USK8_9FIRM/1-50              ..mktna-------TLEETCSSCKGSGKIGTE.............----.--.....P...CQTCQGTGTVLNEEGKEILNFLR----dsi.
A0A402BW72_9FIRM/1-51              ..matdl-------KVEKECPKCHGHGKIANK.............----.--.....D...CDTCNGTGTILTEDGLKILNYLR----nsir
A0A1W2EBJ9_9FIRM/2-50              ...kkdl-------NMEKECAKCHGRGKINNT.............----.--.....I...CAACNGTGTVLTEDGLKILKFLR----dgi.
A0A517DT30_9FIRM/2-50              ...dnnl-------QLEKECSTCNGCGKIANK.............----.--.....A...CPVCNGTGTVLTADGLQVLKYLR----dsi.
A0A1G9MXL8_9FIRM/1-50              ....mks-----TSSIEEECLSCHGTGKINQK.............----.--.....K...CPACNGTGTSLTEDGQKLLKFLR----dsi.
#=GC SS_cons                       .......---S-HHHCEEE-TTTTTTSEETTE.............----.--.....E...-TTTTTSSEEE-HHHHHHHHHHHHHCT....
#=GC seq_cons                      ..............cLEppC.pCpGpGclssp.........................s...CspCsGpGslhTttGpplLcFl+p.......
//
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