GenomeNet

Database: Pfam
Entry: CAP18_C
LinkDB: CAP18_C
Original site: CAP18_C 
#=GF ID   CAP18_C
#=GF AC   PF12153.11
#=GF DE   LPS binding domain of CAP18 (C terminal)
#=GF AU   Mistry J;0000-0003-2479-5322
#=GF AU   Gavin OL;
#=GF SE   pdb_1lyp
#=GF GA   20.50 20.50;
#=GF TC   20.50 20.60;
#=GF NC   20.30 20.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   7649303
#=GF RT   The solution structure of the active domain of CAP18--a
#=GF RT   lipopolysaccharide binding protein from rabbit leukocytes.
#=GF RA   Chen C, Brock R, Luh F, Chou PJ, Larrick JW, Huang RF, Huang TH;
#=GF RL   FEBS Lett. 1995;370:46-52.
#=GF DR   INTERPRO; IPR022746;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain family is found in eukaryotes, and is approximately
#=GF CC   30 amino acids in length, and the family is found in association
#=GF CC   with Pfam:PF00666. CAP18 is a protein which is derived from
#=GF CC   rabbit granulocytes. It has two domains, an N terminal DUF and a
#=GF CC   C terminal Gram negative LPS binding domain. This domain is the
#=GF CC   C terminal domain.
#=GF SQ   75
#=GS A0A2Y9D6N3_TRIMA/137-164  AC A0A2Y9D6N3.1
#=GS G1R3M3_NOMLE/139-166      AC G1R3M3.2
#=GS A0A2Y9GU26_NEOSC/137-164  AC A0A2Y9GU26.1
#=GS A0A2K5KGL9_COLAP/139-166  AC A0A2K5KGL9.1
#=GS A0A2J8PA57_PANTR/139-166  AC A0A2J8PA57.1
#=GS A0A6J3JG38_SAPAP/139-166  AC A0A6J3JG38.1
#=GS H0WLW9_OTOGA/137-164      AC H0WLW9.1
#=GS A0A2K5RWP0_CEBIM/139-166  AC A0A2K5RWP0.1
#=GS A0A6I9K0K0_CHRAS/135-162  AC A0A6I9K0K0.1
#=GS A0A6J0ZBV9_ODOVR/139-164  AC A0A6J0ZBV9.1
#=GS CAMP_NOMLE/136-163        AC Q1KLX9.1
#=GS A0A1S3G4U2_DIPOR/134-161  AC A0A1S3G4U2.1
#=GS A0A5E4ABE5_MARMO/138-165  AC A0A5E4ABE5.1
#=GS G8F302_MACFA/139-166      AC G8F302.1
#=GS A0A096N3S1_PAPAN/138-165  AC A0A096N3S1.2
#=GS A0A6G1AHC9_CROCR/137-164  AC A0A6G1AHC9.1
#=GS I3MP90_ICTTR/137-163      AC I3MP90.1
#=GS A0A1S3AEB2_ERIEU/147-174  AC A0A1S3AEB2.1
#=GS A0A2U3VV05_ODORO/136-163  AC A0A2U3VV05.1
#=GS W5NT47_SHEEP/138-165      AC W5NT47.1
#=GS CAP18_RABIT/137-164       AC P25230.1
#=GS CAP18_RABIT/137-164       DR PDB; 1LYP A; 3-30;
#=GS A0A6P3IH59_BISBI/138-164  AC A0A6P3IH59.1
#=GS A0A5N3VVL6_MUNRE/139-164  AC A0A5N3VVL6.1
#=GS A0A6J1XPG6_ACIJB/137-164  AC A0A6J1XPG6.1
#=GS CAMP_MOUSE/140-166        AC P51437.2
#=GS A0A6P6DXP2_OCTDE/132-159  AC A0A6P6DXP2.1
#=GS A0A1S3WQ01_ERIEU/145-172  AC A0A1S3WQ01.1
#=GS A0A3Q7Q538_CALUR/136-163  AC A0A3Q7Q538.1
#=GS A0A2K6M563_RHIBE/139-166  AC A0A2K6M563.1
#=GS CAMP_MACFA/136-163        AC Q1KLX7.1
#=GS A0A4V2JBA3_9FLAO/7-22     AC A0A4V2JBA3.1
#=GS A0A6P6H8M8_PUMCO/137-164  AC A0A6P6H8M8.1
#=GS A0A455X2E0_9PROT/35-61    AC A0A455X2E0.1
#=GS A0A340WFD3_LIPVE/137-163  AC A0A340WFD3.1
#=GS A0A6I9LNS4_PERMB/144-170  AC A0A6I9LNS4.1
#=GS A0A2K5TIY0_GORGO/139-166  AC A0A2K5TIY0.1
#=GS A0A2U3XNL1_LEPWE/137-164  AC A0A2U3XNL1.1
#=GS A0A2Y9R4G3_TRIMA/135-162  AC A0A2Y9R4G3.1
#=GS A0A1P8FFW0_9PROT/37-56    AC A0A1P8FFW0.1
#=GS A0A1A6GYB1_NEOLE/142-168  AC A0A1A6GYB1.1
#=GS A0A1U7QJA2_MESAU/142-168  AC A0A1U7QJA2.1
#=GS A0A2K5ZF24_MANLE/139-166  AC A0A2K5ZF24.1
#=GS CAMP_MACMU/136-163        AC Q9GLV5.1
#=GS G1T9L4_RABIT/137-164      AC G1T9L4.1
#=GS A0A2K6GW17_PROCO/140-158  AC A0A2K6GW17.1
#=GS Q6TN20_CANLF/137-164      AC Q6TN20.1
#=GS F7B5V0_MACMU/139-166      AC F7B5V0.1
#=GS G1L3J9_AILME/136-163      AC G1L3J9.2
#=GS F6T0C9_CALJA/139-166      AC F6T0C9.2
#=GS A0A2K5E698_AOTNA/139-166  AC A0A2K5E698.1
#=GS P79360_SHEEP/138-164      AC P79360.1
#=GS H2PAV4_PONAB/139-166      AC H2PAV4.2
#=GS A0A2R9CDL0_PANPA/139-166  AC A0A2R9CDL0.1
#=GS A0A452E555_CAPHI/138-164  AC A0A452E555.1
#=GS A0A4W2DQY9_BOBOX/223-249  AC A0A4W2DQY9.1
#=GS CAMP_PANTR/136-163        AC Q1KLX1.1
#=GS A0A2K6E9K8_MACNE/139-166  AC A0A2K6E9K8.1
#=GS A0A5E4ACJ9_MARMO/190-217  AC A0A5E4ACJ9.1
#=GS A0A673U244_SURSU/751-778  AC A0A673U244.1
#=GS A0A2K5L5R1_CERAT/139-166  AC A0A2K5L5R1.1
#=GS J3KNB4_HUMAN/139-166      AC J3KNB4.1
#=GS B9TUC7_BOSIN/138-164      AC B9TUC7.1
#=GS F1C962_FELCA/137-164      AC F1C962.1
#=GS A0A671ENA0_RHIFE/137-164  AC A0A671ENA0.1
#=GS A0A3Q7RK90_VULVU/137-164  AC A0A3Q7RK90.1
#=GS A0A2K6RID8_RHIRO/139-166  AC A0A2K6RID8.1
#=GS CAMP_HUMAN/136-163        AC P49913.1
#=GS CAMP_HUMAN/136-163        DR PDB; 5XRX A; 1-15;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NNT A; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 6S6M B; 1-13;
#=GS CAMP_HUMAN/136-163        DR PDB; 2NA3 A; 1-12;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NNK A; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 2FCG F; 13-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NNM A; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 2LMF A; 3-23;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NMN A; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NNM B; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 2FBS N; 1-13;
#=GS CAMP_HUMAN/136-163        DR PDB; 2K6O A; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 5NNT B; 3-30;
#=GS CAMP_HUMAN/136-163        DR PDB; 6S6M A; 1-13;
#=GS CAMP_HUMAN/136-163        DR PDB; 2FBU H; 3-12;
#=GS CAMP_HUMAN/136-163        DR PDB; 5XNG A; 1-15;
#=GS G3V8S9_RAT/142-168        AC G3V8S9.1
#=GS A0A0D9RTQ0_CHLSB/139-166  AC A0A0D9RTQ0.1
#=GS CTHL7_BOVIN/138-164       AC P56425.1
#=GS A0A2K6UXA1_SAIBB/138-165  AC A0A2K6UXA1.1
#=GS A0A673UAJ7_SURSU/171-198  AC A0A673UAJ7.1
#=GS L8HR30_9CETA/138-164      AC L8HR30.1
#=GS CAMP_GORGO/136-163        AC Q1KLY3.1
#=GS CAMP_GORGO/136-163        DR PDB; 6S6N A; 1-13;
#=GS CAMP_GORGO/136-163        DR PDB; 6S6N B; 1-13;
#=GS CAMP_CALJA/136-163        AC Q1KLY4.1
A0A2Y9D6N3_TRIMA/137-164             ...GRLIRKGGEKIGKKIERVGQRIKEFFEK...
G1R3M3_NOMLE/139-166                 ...GNFFRKAREKIGKEFKRIVQRIKDFLQ-h..
A0A2Y9GU26_NEOSC/137-164             ...RNLIRRGRQKIGRKIQRIGRQIKNILKN...
A0A2K5KGL9_COLAP/139-166             ...GNFFRKAKEKIGGELKKIGQKIKDFLGN...
A0A2J8PA57_PANTR/139-166             ...GDFFRKSKEKIGKEFKRIVQRIKDFLRN...
A0A6J3JG38_SAPAP/139-166             ...GGFLQKAREKIARGFKKIGQKINDFLGK...
H0WLW9_OTOGA/137-164                 ...GGFLRRGVEEFGRKLENIGRKIKEFFQN...
A0A2K5RWP0_CEBIM/139-166             ...GGFLRKATEKIGRGFKKIGQKINDFLGK...
A0A6I9K0K0_CHRAS/135-162             ...GELLRRGGQKIGEKIERIGQRIKGFFQN...
A0A6J0ZBV9_ODOVR/139-164             .dk---IRSGGQKILGKVQRIGERIRDFF--t..
CAMP_NOMLE/136-163                   ...GNFFRKAREKIGKEFKRIVQRIKDFLQ-h..
A0A1S3G4U2_DIPOR/134-161             ...GKFLRKGGKKIGKKLEKLGQKIKDFFHK...
A0A5E4ABE5_MARMO/138-165             ...GGLLQKGGEKIGEKLENIGRKIKDFFQ-s..
G8F302_MACFA/139-166                 ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
A0A096N3S1_PAPAN/138-165             ...GNFFRKVKKKIGGGLKKVGQKIKDFLGN...
A0A6G1AHC9_CROCR/137-164             ...GELIKRGGQKIAQKIERIGQRIHDFFEN...
I3MP90_ICTTR/137-163                 ...GGLLQKGGEKIGEKLENIGRKIKDFFQ-...
A0A1S3AEB2_ERIEU/147-174             ...RDLIKKGTQKIGRKLRKVGQQIKDFIRN...
A0A2U3VV05_ODORO/136-163             ...RDLIRRGGQKIAEKFQRIGEQINDIFRN...
W5NT47_SHEEP/138-165                 ...RDSLQRGGQKILEKAERIGDRIKDIFR-t..
CAP18_RABIT/137-164                  ...RKRLRKFRNKIKEKLKKIGQKIQGFVPK...
#=GR CAP18_RABIT/137-164       SS    ...HHHHHHHHHHHHHHHHHHHHHHHHHHHH...
A0A6P3IH59_BISBI/138-164             ...RDSIWRGQQKILEKARRIGERIKDIFR-...
A0A5N3VVL6_MUNRE/139-164             ..d--KIRRGGQKILDKVKRIGQRTRYFF--y..
A0A6J1XPG6_ACIJB/137-164             ...GELIQRGGQKIGEKIQNIGQRIRDFFSN...
CAMP_MOUSE/140-166                   ...-GLLRKGGEKIGEKLKKIGQKIKNFFQK...
A0A6P6DXP2_OCTDE/132-159             ...GKLLRKVVQKLKEKFKKISQKIKDFIYN...
A0A1S3WQ01_ERIEU/145-172             ...RDLIKKGTQKIGRKLRKVGQQIKDFIRN...
A0A3Q7Q538_CALUR/136-163             ...RDLIRRGRQKIAEKIQRIGQQINNIFRK...
A0A2K6M563_RHIBE/139-166             ...GNFFRKAKEKIGGGLKKIGQKIKDFFGN...
CAMP_MACFA/136-163                   ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
A0A4V2JBA3_9FLAO/7-22                .ts------GGEKITEKLEKIG---------s..
A0A6P6H8M8_PUMCO/137-164             ...GELIQRGGQKIGEKIQNIGQRIRDFFSN...
A0A455X2E0_9PROT/35-61               gke---IDKAVQKTGEKIEKAGEKIQD----avn
A0A340WFD3_LIPVE/137-163             ...GDFLQRGXEKIGKKTERIGQRIKDIFG-...
A0A6I9LNS4_PERMB/144-170             ...-GLLRKGGQKIGEKIKKIGQKIADFFGK...
A0A2K5TIY0_GORGO/139-166             ...GDFFRKAKEKIGKESKRIVQRIKDFLRN...
A0A2U3XNL1_LEPWE/137-164             ...RDLIRRGRQKIGRRINRLGRRIQDILKN...
A0A2Y9R4G3_TRIMA/135-162             ...GRLIRKGGEKIGKKIERVGQRIKEFFEK...
A0A1P8FFW0_9PROT/37-56               ..n------AVEKAGEKIEKAGDKIKD----a..
A0A1A6GYB1_NEOLE/142-168             ...-GLLRKGGQMIGEKLKKIGQRIKEFFEK...
A0A1U7QJA2_MESAU/142-168             ...-ELLRKGGLKIGENFKKIGQKIKDFFQK...
A0A2K5ZF24_MANLE/139-166             ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
CAMP_MACMU/136-163                   ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
G1T9L4_RABIT/137-164                 ...RKRLRKFRNKIKEKLKKIGQKIQGLLPK...
A0A2K6GW17_PROCO/140-158             ..f----------IQRKLEKIGERIREFFQN...
Q6TN20_CANLF/137-164                 ..k-ELITTGGQKIGEKIRRIGQRIKDFFKN...
F7B5V0_MACMU/139-166                 ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
G1L3J9_AILME/136-163                 ...RNLIEKAGQNIRGKIQGIGRRIKDILKN...
F6T0C9_CALJA/139-166                 ...GDILQKAREKIEGGLKKLVQKIKDFFGK...
A0A2K5E698_AOTNA/139-166             ..g-SILRKAGEKIGGGLKKIGQRIKDFFGK...
P79360_SHEEP/138-164                 ...RDSLQRGGQKILEKAERIGDRIKDIFR-...
H2PAV4_PONAB/139-166                 ...GDFFREAREKIGEEFKRIVQRIKDFLRN...
A0A2R9CDL0_PANPA/139-166             ...GDFFRKSKEKIGKEFKRIVQRIKDFLRN...
A0A452E555_CAPHI/138-164             ...RDSLRRGGQKILEKVERIGDRIKDIFR-...
A0A4W2DQY9_BOBOX/223-249             ...RDSIRRGQQKILEKARRIGERIKDIFR-...
CAMP_PANTR/136-163                   ...GDFFRKSKEKIGKEFKRIVQRIKDFLRN...
A0A2K6E9K8_MACNE/139-166             ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
A0A5E4ACJ9_MARMO/190-217             ...GGLLQKGGEKIGEKLENIGRKIKDFFQ-s..
A0A673U244_SURSU/751-778             ...RDLIKKGGQKIGEKIQRIGERIHDFFTN...
A0A2K5L5R1_CERAT/139-166             ...GNFFRKVKEKIGGGLKKVGQKIKDFLGN...
J3KNB4_HUMAN/139-166                 ...GDFFRKSKEKIGKEFKRIVQRIKDFLRN...
B9TUC7_BOSIN/138-164                 ...RDSIRRGQQKILEKARRIGERIKDIFR-...
F1C962_FELCA/137-164                 ...GELIQQGGQKIVEKIQKIGQRIRDFFSN...
A0A671ENA0_RHIFE/137-164             ...REIIRKGGRKIGQGLENIGKRIKDFFSN...
A0A3Q7RK90_VULVU/137-164             ..k-ELITTGVQKIGKKIRRIGQRIKDILKN...
A0A2K6RID8_RHIRO/139-166             ...GNFFRKAKEKIGGGLKKIGQKIKDFLGN...
CAMP_HUMAN/136-163                   ...GDFFRKSKEKIGKEFKRIVQRIKDFLRN...
#=GR CAMP_HUMAN/136-163        SS    ...HHHHHHHHHHHHHHHHHHHHHHHHHHHH...
G3V8S9_RAT/142-168                   ...-GLLRKGGEKFGEKLRKIGQKIKDFFQK...
A0A0D9RTQ0_CHLSB/139-166             ...GKFFRKVKKKIGGGLKKIGQKIKDFLGN...
CTHL7_BOVIN/138-164                  ...RDSIRRGQQKILEKARRIGERIKDIFR-...
A0A2K6UXA1_SAIBB/138-165             ..g-SILQKAGEKIGGGLKKIGQKIKDFFGK...
A0A673UAJ7_SURSU/171-198             ...RDLIKKGGQKIGEKIQRIGERIHDFFTN...
L8HR30_9CETA/138-164                 ...RDSIWRGQQKILEKARRIGERIKDIFR-...
CAMP_GORGO/136-163                   ...GDFFRKAKEKIGKESKRIVQRIKDFLRN...
#=GR CAMP_GORGO/136-163        SS    ...XXXXXXXXXXXXXX-HHHHHHHHHHH-X...
CAMP_CALJA/136-163                   ...GDILQKAREKIEGGLKKLVQKIKDFFGK...
#=GC SS_cons                         ...HHHHHHHHHHHHHHHHHHHHHHHHHHHH...
#=GC seq_cons                        ...tshlRKutpKIGc+l++IGQ+IKDFhpp...
//
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