GenomeNet

Database: Pfam
Entry: Chlam_OMP
LinkDB: Chlam_OMP
Original site: Chlam_OMP 
#=GF ID   Chlam_OMP
#=GF AC   PF01308.20
#=GF DE   Chlamydia major outer membrane protein
#=GF PI   Chlamydia_OMP; 
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_1429 (release 3.0)
#=GF GA   20.00 20.00;
#=GF TC   20.90 20.20;
#=GF NC   19.70 19.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0193
#=GF RN   [1]
#=GF RM   2318528
#=GF RT   Chlamydia trachomatis-host cell interactions: role of the
#=GF RT   chlamydial major outer membrane protein as an adhesin. 
#=GF RA   Su H, Watkins NG, Zhang YX, Caldwell HD; 
#=GF RL   Infect Immun 1990;58:1017-1025.
#=GF DR   INTERPRO; IPR000604;
#=GF DR   TC; 1.B.2;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   The major outer membrane protein of Chlamydia contains four
#=GF CC   symmetrically spaced variable domains (VDs I to IV).  This
#=GF CC   protein is believed to be an integral part to the pathogenesis,
#=GF CC   possibly adhesion. Along with the lipopolysaccharide, the major
#=GF CC   out membrane  protein (MOMP) makes up the surface of the
#=GF CC   elementary body cell.   The MOMP is the protein used to
#=GF CC   determine the different serotypes.
#=GF SQ   11
#=GS OMP2_CHLTR/6-240          AC P38006.2
#=GS A0A4R8IK54_9GAMM/136-224  AC A0A4R8IK54.1
#=GS Q83UA5_CHLTH/6-237        AC Q83UA5.1
#=GS MOMPD_CHLTR/1-393         AC Q46409.1
#=GS Q8RKH0_CHLAO/1-389        AC Q8RKH0.1
#=GS A0A655MYR8_CHLTH/1-270    AC A0A655MYR8.1
#=GS A0A1T4Z5X4_9ACTN/482-600  AC A0A1T4Z5X4.1
#=GS A0A656K7I2_CHLPS/2-124    AC A0A656K7I2.1
#=GS A0A656KE37_CHLPS/1-215    AC A0A656KE37.1
#=GS F8L538_SIMNZ/211-259      AC F8L538.1
#=GS A0A658S8W8_CHLAO/1-217    AC A0A658S8W8.1
OMP2_CHLTR/6-240                     ...........................vnylrltf--------LSFLGIAS-TSLDAMPAGNPAFP--VIPGINIEQKNA...CSFDLCNSYdvLS.ALSgnLKLCFCGDYIFSEEAQ---VKDV.PVVTSVTT-AGVGPSPDITSTTKTRN--FDLVNCNLNTNCVAVAFSLPDRSLSAIPLFDVSFEVK.VGGlKQYYRLPMN.A----YRDFTSEP.LNsESEVTDGMIEVQSNYGFVWDVSLKKVIWKDGVSFVGVGADYRHA--------------------------..-----------------------------------------------------------------------------------------..------------------------------------------------------------scpidyiiansqanpevfiadsdg.......
A0A4R8IK54_9GAMM/136-224             qednglslnadlkyrkiqdmdydsvtvdettysrn---------------------------------------------...---------..--.---..-----------------------.-----------------------------------------------------------------.---.---------.-------------.--.----------------------------------------------------------------------..------------QLTDTSG--AVYEQWHAALGLSYQFGMLTPYAGIKFVGGDYSA----------------------------------..------------------------------------------------------------matetvtsshtty..................
Q83UA5_CHLTH/6-237                   ...........................vnylrltf--------LSFLGIAS-TSLDAMPAGNPAFP--VIPGINIEQKNA...CSFDLCNSYdvLS.ALSgnLKLCFFGDYIFSEEAQ---VKDV.PVVTSVTT-AGIGPSPNITSTTKTRN--FDLVNCNLNANCVAAAFSLPDRSLSAIPLFDVSFEVK.VGGlKQYYRLPMN.A----YRDFTSEP.LNsESEVTDGMIEVQSNYGFVWDVSLKKVIWKDGVSFVGVGADYRHA--------------------------..-----------------------------------------------------------------------------------------..------------------------------------------------------------scpidyiiansqanpevfiad..........
MOMPD_CHLTR/1-393                    ...................................MKKLLKSVLVFAALSSASSLQALPVGNPAEPSLMIDGILWEGFGG...DPCDPCATW..CD.AIS..MRVGYYGDFVFDRVLKTDVNKEF.QMGAKPTTDTGNSAAPSTLTARENPAYGRHMQDAEMFTNAACMALNIWDRFDVFCTLGATSGYLK.GNS.ASFNLVGLF.GDNENQKTVKAES.VP.NMSFDQSVVELYTDTTFAWSVGARAALWECGCATLGASFQYAQSKPKVEELNVLCNAAEFTINKPKGYVG..KEFPLDLTAGTDAATGTKDASIDYHEWQASLALSYRLNMFTPYIGVKWSRASFDADTIRIAQPKSATAIFDTTTLNPTIAGAGDVKTGA..EGQLGDTMQIVSLQLNKMKSRKSCGIAVGTTIVDADKYAVTVETRLIDERAAHVNAQFRF...............................
Q8RKH0_CHLAO/1-389                   ...................................MKKLLKSALLFAATGSALSLQALPVGNPAEPSLLIDGTMWEGASG...DPCDPCSTW..CD.AIS..IRAGYYGDYVFDRVLKVDVNKTItGMGAVPTG--TAAANYKTPTDRPNIAYGKHLQDAEWFTNAAFLALNIWDRFDIFCTLGASNGYFK.ASS.AAFNLVGLI.G--VKGSSIAADQ.LP.NVGITQGIVEFYTDTTFSWSVGARGALWECGCATLGAEFQYAQSNPKIEMLNVVSSPAQFVVHKPRGYKG..TAFPLPLTAGTDQATDTKSATIKYHEWQVGLALSYRLNMLVPYIGVNWSRATFDADAIRIAQPKLAAAVLNLTTWNPTLLGEA-TALDT..SNKFADFLQIASIQINKMKSRKACGVAVGATLIDADKWSITGEARLINERAAHMNAQFRF...............................
A0A655MYR8_CHLTH/1-270               ...................................---------------------------------------------...---------..--.---..-----------------------.------------------------------------------MALNIWDRFDVFCTLGATSGYLK.GNS.ASFNLVGLF.GDSENHATVSDSKlVP.NMSLDQSVVELYTDTTFAWSAGARAALWECGCATLGASFQYAQSKPKVEELNVLCNAAEFTINKPKGYVG..QEFPLDLKAGTDGVTGTKDASIDYHEWQASLALSYRLNMFTPYIGVKWSRASFDADTIRIAQPKSATTVFDVTTLNPTIAGAGDVKASA..EGQLGDTMQIVSLQLNKMKSRKSCGIAVGTTIVDADKYAVTVETRLIDERAAHVNAQFRF...............................
A0A1T4Z5X4_9ACTN/482-600             .................vfgtgfrasdfltpmtvt---------------------------------------------...---------..--.---..-----------------------.------------------------GAGGKDLHDAWGLDACAYMGLTIPDFPNLFCMYGPNTGLVL.HGN.VVFFMECQAnYVAKSVELLLRED.VH.SMSLTQEKFESYRDEIFAASA-------------------------------------------------..-----------------------------------------------------------------------------------------..------------------------------------------------------------hrvwewsgths....................
A0A656K7I2_CHLPS/2-124               .................................sl------SLLALSGMFSSSTLNAMPSGNPASPVI--PNINPEQKGMcafEICNSYNLF..AAlTGS..LKIGFSGDYVFSESARISNVPVV.--TSVSTMNTGPSP---------------------------------------------------.---.---------.-------------.--.----------------------------------------------------------------------..-----------------------------------------------------------------------------------------..------------------------------------------------------------tvtsttkdfdfdlndskvssscvfasvaiqd
A0A656KE37_CHLPS/1-215               ..................................m---------------------------------------------...---------..--.---..-----------------------.-----------------------------------------------------------------.---.---------.-------------.--.---------EFYTDTSFSWSVGARGALWECGCATLGAEFQYAQSNPKIEMLNVTSSPAQFVIHKPRGYKGasSNFPLPITAGTTEATDTKSATIKYHEWQVGLALSYRLNMLVPYIGVNWSRATFDADTIRIAQPKLKSEILNITTWNPSLIGSTTALPNNsgKDVLSDVLQIASIQINKMKSRKACGVAVGATLIDADKWSITGEARLINERAAHMNAQFRF...............................
F8L538_SIMNZ/211-259                 ..............................etrhf---------------------------------------------...---------..--.---..-----------------------.-----------------------------------------------------------------.---.---------.-------------.--.----------------------------------------------------------------------..-----------------------------------------------------------------------------------------..----------------NMKNRRKFGLALGCSLSNFNRFSATVEARLIDEQALTLAGEVK-f..............................
A0A658S8W8_CHLAO/1-217               .................................mf---------------SSFALNAMPSGNPASPVI--PNINPEQKGMcafEICNSYNLF..AAlTGS..LKIGFSGDYVFSESARISNVPVV.--TSVTTMNTG----PSPTVTSTTKDFDFNLNDSKVSSSCVFASVAIQDTSPAAIPLLDISFDVKiGGL.KQYYRLPLN.AYRDYTSSPLA--.-S.ESQVTDGLVEVQSNYGFVWDLSLKKILWKDGISFIGIGADYRHAACPVN---------------------..-----------------------------------------------------------------------------------------..------------------------------------------------------------yivvnsqanpevy..................
#=GC seq_cons                        ..................................h.....................................................................................................................................huhsl.Dh...hh.hhs.sh.hh.hs..h.a.h.s...h.....t...t......p.thspthhEh.oshsFsWssuh+thlWcsGhuhlGhthpYtpu..................................................................................................................................................................................................................
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