GenomeNet

Database: Pfam
Entry: CoV_NSP3_C
LinkDB: CoV_NSP3_C
Original site: CoV_NSP3_C 
#=GF ID   CoV_NSP3_C
#=GF AC   PF19218.2
#=GF DE   Coronavirus replicase NSP3, C-terminal
#=GF PI   Corona_NSP3_C;
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Mannual
#=GF GA   25.00 25.00;
#=GF TC   288.80 288.80;
#=GF NC   20.10 19.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   29128390
#=GF RT   Nsp3 of coronaviruses: Structures and functions of a large
#=GF RT   multi-domain protein.
#=GF RA   Lei J, Kusov Y, Hilgenfeld R;
#=GF RL   Antiviral Res. 2018;149:58-74.
#=GF DR   INTERPRO; IPR043611;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family represents the C-terminal region of non-structural
#=GF CC   protein NSP3 (also known as nsp3). NSP3 is the product of ORF1a.
#=GF CC   It is found in human SARS coronavirus polyprotein 1a and 1ab,
#=GF CC   and in related coronavirus polyproteins. It is a multifunctional
#=GF CC   protein comprising up to 16 different domains and regions. NSP3
#=GF CC   binds to viral RNA, nucleocapsid protein, as well as other viral
#=GF CC   proteins and participates in polyprotein processing [1].
#=GF SQ   111
#=GS A0A096XNJ3_9ALPC/1991-2443  AC A0A096XNJ3.2
#=GS B1PHK1_9ALPC/2170-2620      AC B1PHK1.1
#=GS A8JNZ1_9ALPC/1997-2448      AC A8JNZ1.1
#=GS E0XIZ2_9BETC/2227-2716      AC E0XIZ2.1
#=GS B1PHJ3_9ALPC/2208-2658      AC B1PHJ3.1
#=GS S5YAF0_9ALPC/2093-2544      AC S5YAF0.1
#=GS A0A0U1WHG1_9ALPC/1873-2324  AC A0A0U1WHG1.1
#=GS R1A_BC512/2065-2516         AC P0C6F6.1
#=GS R1AB_BCHK5/2318-2814        AC P0C6W4.1
#=GS A0A0F6SKM6_9GAMC/1806-2277  AC A0A0F6SKM6.1
#=GS A0A125R5A3_9ALPC/1930-2382  AC A0A125R5A3.1
#=GS A0A0A7UXR0_9BETC/2296-2783  AC A0A0A7UXR0.1
#=GS R1AB_BCHK4/2272-2768        AC P0C6W3.1
#=GS B2BW32_9GAMC/1739-2217      AC B2BW32.1
#=GS R1A_BCHK9/2122-2596         AC P0C6T6.1
#=GS A0A1X9JQL5_9ALPC/1888-2340  AC A0A1X9JQL5.1
#=GS A0A0U1WHD1_9ALPC/2163-2613  AC A0A0U1WHD1.1
#=GS Q0PL14_9ALPC/1915-2367      AC Q0PL14.1
#=GS R1AB_CVPPU/1918-2370        AC P0C6Y5.1
#=GS A0A0U1WHG4_9ALPC/2013-2464  AC A0A0U1WHG4.1
#=GS H9TEW9_9ALPC/1919-2371      AC H9TEW9.1
#=GS A0A0K2RW65_9BETC/2283-2771  AC A0A0K2RW65.1
#=GS B1PHK0_9ALPC/2170-2620      AC B1PHK0.1
#=GS D9J202_9ALPC/1906-2357      AC D9J202.1
#=GS E0ZN51_BCHK9/2118-2591      AC E0ZN51.1
#=GS A0A023YA54_MERS/2328-2824   AC A0A023YA54.1
#=GS R1AB_CVM2/2281-2769         AC P0C6X8.1
#=GS A0A125R5A4_9ALPC/1930-2382  AC A0A125R5A4.1
#=GS R1AB_IBVB/1782-2249         AC P0C6Y1.1
#=GS B7U2M9_9BETC/2248-2736      AC B7U2M9.1
#=GS A0A1B3Q5W8_9BETC/2165-2640  AC A0A1B3Q5W8.1
#=GS A0A059VJE6_9ALPC/2051-2502  AC A0A059VJE6.1
#=GS B8Q8U6_SARS/2237-2726       AC B8Q8U6.1
#=GS R1AB_BC512/2065-2516        AC P0C6W0.1
#=GS B8Q8S5_SARS/2237-2726       AC B8Q8S5.1
#=GS T2B9I2_MERS/2227-2723       AC T2B9I2.1
#=GS H9TEX0_9ALPC/1919-2371      AC H9TEX0.1
#=GS B1PHJ4_9ALPC/2208-2658      AC B1PHJ4.1
#=GS A0A0P0LKV0_CVH22/2023-2474  AC A0A0P0LKV0.1
#=GS A0A0U1UZ65_BCHK4/2280-2776  AC A0A0U1UZ65.1
#=GS Q0ZJB1_CVHK1/2335-2823      AC Q0ZJB1.1
#=GS U5LR11_9BETC/2292-2788      AC U5LR11.1
#=GS R1A_BCHK4/2272-2768         AC P0C6T4.1
#=GS A0A140ESF0_9NIDO/1546-1981  AC A0A140ESF0.1
#=GS R1A_CVMA5/2335-2823         AC P0C6V0.1
#=GS R1A_CVHOC/2248-2736         AC P0C6U7.1
#=GS A0A0U1UZC3_9ALPC/1927-2378  AC A0A0U1UZC3.1
#=GS B8Q8S4_SARS/2237-2726       AC B8Q8S4.1
#=GS F2YDB1_SARS/2237-2726       AC F2YDB1.1
#=GS H9BZX6_9BETC/2336-2824      AC H9BZX6.1
#=GS B8Q8U7_SARS/2237-2726       AC B8Q8U7.1
#=GS A0A0U2UMS4_9ALPC/1916-2368  AC A0A0U2UMS4.1
#=GS A0A0K1YZY7_SARS/2237-2726   AC A0A0K1YZY7.1
#=GS S5Z1D1_9ALPC/2093-2544      AC S5Z1D1.1
#=GS A0A0K2RVJ3_9BETC/2283-2771  AC A0A0K2RVJ3.1
#=GS H9BR34_9NIDO/1447-1883      AC H9BR34.1
#=GS Q06BE1_9BETC/2248-2736      AC Q06BE1.2
#=GS A3EXC0_BCHK4/2282-2778      AC A3EXC0.1
#=GS H9BQZ9_9NIDO/1556-1991      AC H9BQZ9.1
#=GS B6VDX7_THCOV/1525-1961      AC B6VDX7.1
#=GS H9BR16_9NIDO/1514-1959      AC H9BR16.1
#=GS B2BW31_9GAMC/1739-2217      AC B2BW31.1
#=GS A8JNZ0_9ALPC/1997-2448      AC A8JNZ0.1
#=GS R1AB_BCHK9/2122-2596        AC P0C6W5.1
#=GS U5KNA9_9BETC/2292-2788      AC U5KNA9.1
#=GS R1AB_SARS/2237-2726         AC P0C6X7.1
#=GS A0A088DIE1_9BETC/2398-2888  AC A0A088DIE1.1
#=GS R1AB_CVMJH/2338-2826        AC P0C6Y0.1
#=GS D9J203_9ALPC/1906-2357      AC D9J203.1
#=GS A0A0U1UZA8_9ALPC/2207-2657  AC A0A0U1UZA8.1
#=GS R1AB_CVHOC/2248-2736        AC P0C6X6.1
#=GS R1A_SARS2/2260-2749         AC P0DTC1.1
#=GS A0A0K1RLM9_9ALPC/1914-2366  AC A0A0K1RLM9.1
#=GS A0A240FW17_9ALPC/1629-2072  AC A0A240FW17.1
#=GS H9BZX5_9BETC/2337-2824      AC H9BZX5.1
#=GS A0A0K1Z0N1_SARS/2237-2726   AC A0A0K1Z0N1.1
#=GS A3EXI9_BCHK9/2118-2591      AC A3EXI9.1
#=GS B1PHI6_9ALPC/2264-2714      AC B1PHI6.1
#=GS H9BR24_9NIDO/1520-1952      AC H9BR24.1
#=GS A3EXE7_BCHK5/2317-2813      AC A3EXE7.1
#=GS R1A_CVM2/2281-2769          AC P0C6U9.1
#=GS A0A0U1UZ20_9ALPC/2170-2620  AC A0A0U1UZ20.1
#=GS Q6UZF5_SARS/2237-2726       AC Q6UZF5.1
#=GS F2YDB2_SARS/2237-2726       AC F2YDB2.1
#=GS R1A_CVH22/2019-2469         AC P0C6U2.1
#=GS E0ZN59_BCHK9/2097-2571      AC E0ZN59.1
#=GS H9AA60_9BETC/2269-2757      AC H9AA60.1
#=GS R1AB_BC279/2243-2732        AC P0C6V9.1
#=GS R1AB_CVMA5/2331-2823        AC P0C6X9.1
#=GS R1AB_FIPV/1943-2395         AC Q98VG9.2
#=GS A0A0U1WHK4_SARS/2237-2726   AC A0A0U1WHK4.1
#=GS V5TFR4_9GAMC/1739-2217      AC V5TFR4.1
#=GS A3EXA2_BCHK4/2272-2768      AC A3EXA2.1
#=GS R9QTB2_SARS/2229-2718       AC R9QTB2.1
#=GS C0KYZ6_9BETC/2273-2826      AC C0KYZ6.1
#=GS H9BR07_9NIDO/1535-1970      AC H9BR07.1
#=GS K4K1U5_9ALPC/2053-2505      AC K4K1U5.1
#=GS R1A_SARS/2237-2726          AC P0C6U8.1
#=GS R1A_CVMJH/2273-2826         AC P0C6V1.1
#=GS A0A0U1WHG0_SARS/2232-2721   AC A0A0U1WHG0.1
#=GS A0A0F6WGL5_9GAMC/1806-2277  AC A0A0F6WGL5.1
#=GS R1A_IBVB/1782-2249          AC P0C6V3.1
#=GS T2B9U0_MERS/2227-2723       AC T2B9U0.1
#=GS R1A_BCHK5/2318-2814         AC P0C6T5.1
#=GS A0A0P0ILY9_CVH22/2023-2474  AC A0A0P0ILY9.1
#=GS R1AB_CVH22/2019-2469        AC P0C6X1.1
#=GS B1PHI7_9ALPC/2264-2714      AC B1PHI7.1
#=GS R1A_BC279/2243-2732         AC P0C6F5.1
#=GS R1AB_SARS2/2260-2749        AC P0DTD1.1
#=GS Q9J3E9_9BETC/2332-2820      AC Q9J3E9.1
#=GS R1A_CVPPU/1918-2370         AC P0C6V2.1
A0A096XNJ3_9ALPC/1991-2443             .....................................................................s-SLC.KGWTDGY.ANSTF.IKQDYCNG.SLICYECLRGYEELSDFPHTQVKWSFTYN...--LSEF-ALFYHVL-TFTIMWVFGNKYV.KALLFYFVLQCWNSAMCWFd....eTe.piW............FLNFI.KFS.SISAHGFSLFCVFKIACFVKHVVFGCNDVKCLSCSRSAKYDRISCDTIVNGVKRSFYVKANGGKS.FCEKHQFFCQNCDSYGVGCTFINDHVAKEVANVTRTAVRATGPAYVEVDKVTFEDGFYYLY..SGEQF.W.KYEFDVSSKKFDSENCIKDLSL........----GADFMVYN-DNGTARANALNASVYFSQLLCKPIKVVNRVLLSSL--TIDHGSAMHEAYCKVLHNSFNKDFTRCTD.LQNCKS.........................VAGI.ECR.......DSTFETGVKLAHKFDILLCNDSANNFVTT.......YAKA.GTRIGTADLAVFNRESVREVSHAVLARNKTTIVWSVNVFSKLSGDTQDYIVRTTKAKGLLFLLTFNDHV-n..
B1PHK1_9ALPC/2170-2620                 .....................................................................e-TLC.KDHVDGY.ANSTF.VKDDYCN-.SALCRVCLFGYQELADLPHTNVVWRHVGM...PLFVNWMPLFYLAF-----LFIFGGFVT.KGFVLYFVAQYVNAFGVHFg...mqDl..fW............PLHLI.PFS.TFGDEMVVLFLVGRFLMFVKHVCFGCDKASCVACSKSARLTRVPMQTIVCGANKSFYVTANGGKN.FCSRHNFFCVNCDSHGPGNTFINEVVARELSNVVKSSVKPTDVAYLEVDKVEFNDGFYYLY..SGETF.W.RYNFDITDNKYSCKEALKSCNV........----LSDFIVYN-DAGSNITQVRNACVYFSQLLCKPIKLVNASLLSTL--NVDFNGALHSAFVNVLSDSFSRDLSNCST.MNECKQ.........................ALGF.EVS.......DDEFLNGVSDAHRYNVLLSDTSCNNLVTS.......YAKP.EEKLSVHDLGTCMRFGAKVVNHNVLIKENVPVVWLASEFHLLSEEGRKYIVKTTKAKGVTFLLTFNSNP-m..
A8JNZ1_9ALPC/1997-2448                 .....................................................................d-YIC.GSAVRGY.ASSDF.DKSKFCNG.SLVCKTCLFGYQELSEFQHVGVVWSYVRE...PLFASVLPLCYFAV-----IAIFGGVVE.RFALCYFAAQFINNVLSFLk...lqDs..fW............LVQLV.PFD.IFGDEILVMFLSYKAICFFKHVVFGCDKPSCVACCKSAKLKRIAMDTIVNGSRRSFYVNANGGAK.LCKKHNFFCVACDSYGSGHTYINDHIANELHNVTKLHVKPTGPAFINVDRVEFSDGFYRIF..SGDKF.W.KYNFDITDKKFSCKEVLKNCNI........----LDDFIVFD-NNGSNLSQVQNACVYLSQLLCKPIKIIDSTLLSSL--NVDFNGALHKAFLDVLHNSFGKDFSSCKT.MHDCKE.........................LLEL.DVS.......DDDFIKVVSDAHRFDVLITDTSFNNFCTS.......YAKP.AEKLSSFDLAHCMRSGAKVVNHNVLIKEKMPIVWNCVDFAKLSVDARKYIVKTAKVKGVTFLLTVNNNVM...
E0XIZ2_9BETC/2227-2716                 ....................................................................ms--YC.DGVRAGY.VNSSNvTIPDYCAG.SLPCGVCLGGLDSLDAYPALETIQVTISS...YK-LDL-TFVGMMAEWFLAYMLFTKFFY.LLGLFALMQLFFGLFATHFv....nN...sWlmw.....liinVVQMA.PIS.AMVRMYVFFASFYYVWKAYIHVINGCTSSTCIMCYKRNRATRVECTTIVNGMKKSFYVYANGGQG.FCKLHNWNCLNCDTFCSGSTFISDEVARDLSLQFKRPINPTDQSSYNVDSVTVKDGTLYLY..FQKAG.K.LTYERHPLSYFVNLDNLRANNV........KGTLPINVIVFDGKSKCEEAAAKSASVYYSQLMCQPILLLDQALISDVGDSTEVAVKMFDAYVNAFSSTFNAPMEKLKT.FIATAHaeiakgvslds..vlstflsaarqgFVDS.DVD.......TKDVMECLKLSHHSDLEITSDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCSARHINAQVAKSHNVSLVWNVKDYMSLSEQLRKQIRSAAKKNNIPFKLTCATTR-q..
B1PHJ3_9ALPC/2208-2658                 .....................................................................d-YFC.KDHVEGY.SNSTF.VKDEYCA-.STMCKVCLLGFQELADLPHTKVVWKYVGF...PIFVNWLPFLYLAF-----LFTFGGIFV.KGLVCYFFAQYVNTLGVYFg...mqEk..fW............PLQII.PFD.IFGDEIVVTFIVYKALMFIKHVCFGCEKPSCVACSKSARLNRVPMQTIVNGANKLFYVVANGGSS.YCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGESFIEVDKVSFENGSYYLY..SGETF.W.RYNFDVTEAKYGCKEVLKNCNV........----LSDFIVYN-NTGTNVSQIRNACVYFSQMLCKPIKLVDATLLSTL--NVDFNGALHSAFVQVLNDSFSKDLSSCAS.MTECKQ.........................ALGF.DVS.......DEEFVDAVSNAHRFNVLLSDNSFNNLLTS.......YAKP.EEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNTNAM...
S5YAF0_9ALPC/2093-2544                 .....................................................................d-IFC.SGYVDGY.ANSSF.DKNAYCD-.GQLCKVCLFGYDELADFPHTTVVWEHLKD...PFVINVIPLFYLGF-----LAIFGGTVT.RIMVLYFVSQYVNMLGAYLg...vqDs..vW............FLQFF.PFD.VFGDEIVVLFLVVRVLMFLKHVLFGCDKPSCLACSKSARLKRVPVSTIVSGANKSFYVNANGGTS.FCKKHNFYCVNCDSYGLGCTFINDVVAAEVGNVTKLNVQATGPAFVEVDKVEFNNGFYYLY..SGNTF.W.KYNYDITDSRYSCKEALKTCNV........----AADFIICN-NTGSNMAQVKNACVYFSQLLCKPIKIVDSTLVSTL--GVDFSTSIHSAFVEILTDSFGKDLSNCTT.MSQCRA.........................TLGFdDIS.......DEDFTGAVANAHRYGLLLTDISFNNFITS.......YAKP.EEKMSVHDLAICMRSGARVANHNVLVKENVPVVWSAEAFNALSEESRKYVVKTSKVKGLTFMLSFNNVRM...
A0A0U1WHG1_9ALPC/1873-2324             .....................................................................s-VFC.DDYVDGY.YNSTF.VKSDYCD-.GLVCKVCLYGYQELSDFPHLDLTWEFITH...PLLVSFMPLLYMAF-----LLCFGNKWV.RFLMCYFILQYVNAAGVVLg...lqDs..iW............ALHLV.PFD.IFCDEIVVCWLVYVILAFLKHVCFGCEKPSCVACSKSARLTRIPIQTVVNGSTKVVYVAANGGNRpFCKKHNFFCVNCDSYGVGCTFINEHVARELANVTKTNVQPTGDAYIVIDKVEFQNGFYYLY..SGETF.W.RYNFDITSSKYSCKEVLKSCNI........----LSDFIVFD-NNGTNVSQVHNASVYLSQLLCKPIKLVDSALLSTL--DVDFNGALHSAFLEVLNNSFNKDFSGCAT.MSECKS.........................LLGF.EVS.......DEDFYNAVSDAHRFNILLTDISFNNFITT.......YAKP.EEKFATHDAAVCMRSGSKIVNHNVLIKENAAVVWYQRDFHALSEDCRKYIVKTSKQKGVNIMITFNDTRM...
R1A_BC512/2065-2516                    ....................................................................tp--IC.KRYTDGY.ANSTF.DKNDYCG-.NVLCKICLYGYEELSDFTHTRVIWQHLKD...PLIGNILPLFYLVF-----LIIFGGFFV.RIGITYFIMQYINAAGVALg...yqDn..vW............LLHLL.PFN.SMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKK.FCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLY..SGSTF.W.KYNFDITEAKYACKDVLKNCNI........----LTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NVDFSANLHKAFVEVLSNSFGKDLSNCSN.MNECRE.........................SLGLsDVP.......EEEFSAAVSEAHRYDVLISDVSFNNLIVS.......YAKP.EEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRM...
R1AB_BCHK5/2318-2814                   .....................................................................h-SLC.DGMVEAY.RNVSY.DVNDFCSNrSALCNWCLIGQDSLTRYSAFQMIQTHVTS...YV-INI-DWVWFVMEFALAYVLYTSTFN.VLLLVVSSQYFFSYTGAFV......N....WrsynylvsgyffCVTHI.PLL.GLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTS.FCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLH..YSREG.A.SCYERYPLCYFTNLDKLKFKEVck....tpTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDK.LVATARdcvkrgddfqtv.iktftdaargpaGVES.DVE.......TSSIVDALQYAYKHDLQLTTEGFNNYVPS.......YIKP.-DSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLR-s..
A0A0F6SKM6_9GAMC/1806-2277             .....................................................................g-SFC.-SPYADY.GKESF.DVLRYCGS.DFTRRVRLHGKDSPHLYKHAYSVAQFYKD...A--VNGISFTWNWLYMLFLLLFVKPVAG.FVIICYCIRYLVLSTTVLQtgvgflD....W............FIQTV.FANfNFMGAGFYFWLFYKVYIQVHHIMY-CKDITCEVCKRVARSNRHEVSVVVNGRKQLVHVYTNSGYS.FCKRHNWYCRNCDKYGHQNTFMSPEVAGELSEKLKRHVKPTAFAYHVVDDACLVDDFVNLK..YNAATpG.KEGVHSAVKCFSVSDFLKKAVFlkd.aqkcEQISNDSFIVCNTHSAHALEEAKNAAIYYAQCLCKPILILDQVLYDTL-ACEPVSKSLVDKVCGVLAGILDVDNYCFSG.KLNYKAgs.....................lrDALL.SVT......aGEEAVDMAMFCHNYDLSYTSDGFTNVVPS.......YGFD.LGKLTPRDKGFLINADACIANLKV--RNAPPVVWNYHDLIKLSDNCLKFLVSGVIKSGAKFYVTRSDVK-q..
A0A125R5A3_9ALPC/1930-2382             .....................................................................k-LAC.SGSVQAY.SNSSF.VKSEVCGN.SILCKACLASYDELADFDHLQVSWDYKSD...PLWNRVIQLSYFIF-----LAVFGNNYV.RCFLMYFVSQYLNLWLSYLg...yvKy..sW............FLHVV.NFE.SISVEFVIIVVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGK.LCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECSDGFYRFY..VGEEF.T.AYDYDVKHKKYSSQEVLKTMFL........----LDDFIVYS-PSGSSLASVRNVCVYFSQLIGRPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKS.LEECYK.........................ACNL.DVT.......FSTFEMAINNAHRFGILITDRSFNNFWPS.......KIKPgSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSSLSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A0A7UXR0_9BETC/2296-2783             ....................................................................wt--LC.----DSI.DVSSIgFTFDNCT-.SVACQFCLSGFDMIDTYKAIDFVQYHVAG...FSGFDYKSFAVLVLELVISYVLYTVWFY.PLFGLVCLQIFTTWFPDMFm...itEl..hWfvr.....lflyMANLL.PFH.VFLRLYIIVVFIFKMFKLFRHVVHGCNKPGCLFCYKRNKSVRVKCSTVVGGMLRYYDVMANGGIN.FCNKHQWNCIGCDSYKPGNTFITVEAAAELSKEFKRTINPTDVTHYVVECVQQVGCKMRLF..YEKDG.Q.RVYDDVNASMFVDFNGLLHSKV........NGVPKTNVVIVD--GDADKANFLNAVVFYAQSLFRPVLMIDKSLLTTASTGTNVSKTMFDVYVDTLLGMFEVERKSLNN.FIQVAHkslaegvqlekv.lntfigcarktcSIDS.DVD.......TRCLADTVMSTVAAGLDMTDESCNNLVPT.......YIKS.-DNIVAADLGVLIQNNCKHVQGNVAKMAGVSCIWHVDVYNQLSSDFQHKLKKACVKTGLKLKLTYNKQA-a..
R1AB_BCHK4/2272-2768                   .....................................................................r-TLC.DGLVVEY.RNTSF.DVMEFCSNrSVLCQWCLIGQDSLTRYSALQMLQTHITS...YV-LNI-DWIWFALEFFLAYVLYTSSFN.VLLLVVTAQYFFAYTSAFV......N....WraynyivsglffLVTHI.PLH.GLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTS.YCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELH..YNRDG.S.SCYERYPLCYFTNLEKLKFKEVck....tpTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEK.LINTARdcvrrgddfqnv.lktftdaarghaGVES.DVE.......TTMVVDALQYAHKNDIQLTTECYNNYVPG.......YIKP.-DSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR-a..
B2BW32_9GAMC/1739-2217                 .....................................................................g-YLC.-YDYNTY.SDYHF.NVFDYCN-.GTLCELCLSGVDSLHLYKHAKTTYQKVVT...------TDFVGYAPLYFILQAVFFKSAA.MLSGLLFMIKFTINFGVFN......T...gIyiv......dyvVSTIA.NTI.DPIMISTIVCGMIKLYRIANHYFYGCKNPACDKCHAATVSERTELSCVVGSKRFPYYVYANSVAK.MCGKHMWCCKNCDVFGEGNTFISTAIVGDLTDKIRRKVKATSEALAIATLIEEGDNYELHYklNGAEG.S.RVY---------DKNQFWNCAIpvsdaskcGKFEPDNFITYNASSQSELSLAKQCAVYYAQVLSRPTIIV--PLSQEEYTSGKVTRTQVTRLLDLCDDYYGISDAEVKM.SVIKSNtgatlsaav......qqyvakivpsQVMNlDV-.......-----DFLLFCDRYGLTPSQAAYNNAVPNstcnldaYEGEqFLRVKEQVKSAFVQFGVKYVDFKMALNDSKIAILQYDFLKSLPGNYLPSLLMRIRQAGVTLRVTTSQIMQ...
R1A_BCHK9/2122-2596                    ............................................................dyvlvnetgt----.-------.-----.--------.GWLHHLCMAGMDSLD-YPALRMQQHRYGS...P--YNY-TYILMLLEAFFAYLLYTPALP.IVGILAVLHLIVLYLPIPL.....gN...sWlvv.....flyyIIRLV.PFT.SMLRMYIVIAFLWLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTH.FCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCY..FESDG.Q.RSYERFPMDAFTNVSKLHYSEL.......kGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKH.LYSTALqqissgmtvesvlkvfvgstraeakDLES.DVD.......TNDLVSCIRLCHQEGWEWTTDSWNNLVPT.......YIKQ.-DTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLK-a..
A0A1X9JQL5_9ALPC/1888-2340             .....................................................................s-SLC.TEWTDGY.ANSTF.VKQDYCNG.SLICYECLRGYEELSDFAHIHVRWSFTYN...--LSEF-FIFYHAL-TFTIMWVFGSKYV.KTGLFYFVLQCWNNAMCWF.....dNtepiW............LLNIV.KFS.SVSVHFFSLFCVYKLACFVKHVLFGCSKPNCLSCSRSAKYDRVPCDTIVNGVKRSFYVTANGGRK.FCDKHQFFCQNCDSLGVGCTFINEHVAKEVSNVTKTNVRATGPAYVEIDKVTFDDGFYYLH..AGDQF.W.KYDFDVSSKKFDSEVCIKDLSL........----TADFMVFN-DSGTARANAVNASVYFSQLLCKPIKLVNKVLLSSL--TIDHGGAMHDAYCKVLHNSFNKDFAKCGD.LQSCKR.........................CVGV.DCR.......DAVFEQGVKLAHKYDVLLCNDSANNFVTT.......YAKA.GTRVGTADLAVFNRESVREINHAVLTRNKVTVVWSVNVFSKLSTDTQDYIVKTTKAKGLLFLLTFNDHV-n..
A0A0U1WHD1_9ALPC/2163-2613             .....................................................................e-TLC.KDYVEGY.ANSTF.VKDDYCS-.SALCRVCLFGYQELADLPHTNVVWRHVGM...PLFVNWMPLFYLAF-----LFIFGGFVT.KGFVLYFVAQYVNTFGVHFg...mqDl..fW............PLHLV.PFS.TFGDEFVVLFLVGKFLMFVKHVCFGCDKASCVACSKSARLTRVPMQTIVCGANKSFYVAANGGKN.FCSRHNFFCVNCDSHGPGNTFINDVVARELSNVIKSSVKPTDVAYLEVDKVEFNDGFYYLY..SGETF.W.RYNFDITDSKYSCKEALKSCNV........----LSDFIVYN-DAGSNITQVRNACVYFSQLLCKPIKLVNASLLSTL--NVDFNGALHAAFVNVLSDSFSKDLSTCTT.MNECKQ.........................ALGF.EVS.......DDEFLNGVSDAHRYNVLLSDTSCNNLVTS.......YAKP.EEKLSVHDLGTCMRFGAKVVNHNVLIKENVPVVWLASEFHLLSEEGRKYIIKTTKAKGVTFLLTFNSNP-m..
Q0PL14_9ALPC/1915-2367                 .....................................................................k-LTC.NGAVQAY.KNSSF.IKSAVCGN.SILCKACLASYDELADFQHLQVAWDFKSD...PLWNRLVQLSYFAF-----LAVFGNNYV.RCFLMYFVSQYLNLWLSYFg...yvEy..sW............FLHVV.NFE.SISAEFVIIVIVVKAVLALKHIVFSCSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGK.FCKKHNFYCKNCESYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKNMLL........----LDDFIVYS-PSGSALANVRNACVYFSQLIGKPIKIVNSDLFEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LEECYK.........................ACNL.NVS.......FSTFEMAVNNAHRFGILITDRSFNNFWPS.......KVKPgSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
R1AB_CVPPU/1918-2370                   .....................................................................k-LTC.NGAVQAY.KNSSF.IKSAVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWNRLVQLSYFAF-----LAVFGNNYV.RCFLMYFVSQYLNLWLSYFg...yvEy..sW............FLHVV.NFE.SISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGK.FCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKSMLL........----LDDFIVYS-PSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYR.........................ACNL.NVS.......FSTFEMAVNNAHRFGILITDRSFNNFWPS.......KVKPgSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A0U1WHG4_9ALPC/2013-2464             .....................................................................e-SLC.TDYVKNY.SESSF.NKAAYCD-.GITCKTCLYGYQELSDFPHTSTVWEHVKD...PLFKKVMPMFYMAF-----LLIFGGTIT.RSCMLYFLAQYVNNIGVFLg...vqDn..vW............ALQFV.PFD.VFGDEIVVIFLVVKILLFAKHIVFGCDKPSCVACTKSARLTRVPMQTIVNGSNKSFYVAANGGKK.FCKKHNFFCVNCDSYGPGNTFINDVVAAEISNVVKTSVAPTAPATIDVTKVEFQNGFYYLY.gPDKVF.W.RYNFDITESKYSCKDVLKSCNI........----LSDFIVYN-NVGSNVAQVRNACVYFSQLLCKPIKLVDSTLLSTL--NVDFNGALHSAFVDVLNESFSKDLSSCTT.MSDCKT.........................ALDI.EAD.......DEDFVNCVSNAHKFNVLLTDLSFNNFVTS.......YAKP.EEKLSTHDIAACMRGGSKVVNHNVLVKENVPIVWLAKDFNMLSEEGRKYVVKTAKIKGINFMLTFNENRM...
H9TEW9_9ALPC/1919-2371                 .....................................................................k-LAC.NGAVQAY.KNSSF.VKSEVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWSRLVQLSYFAF-----LAVFGNNYV.RCVLMYFVSQYLNLWLSYFg...yvEh..sW............FLHVV.NFE.SISAEFVIIVIVVKAVLVLKHIVFSCSNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGK.LCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHHEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKNMLL........----LDDFIVYS-PSGSSLANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYR.........................ACNL.DVS.......FSTFEMAVNNAHRFGVLITDRSFNNFWPS.......KVKPgSAGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A0K2RW65_9BETC/2283-2771             ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsvr.....llvsLANML.PAH.VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTA.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLF..YERNG.Q.RTYDDVNASLFVDYSNLLHSKV........KGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqickv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKS.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMA...
B1PHK0_9ALPC/2170-2620                 .....................................................................e-TLC.KDHVDGY.ANSTF.VKDDYCN-.SALCRVCLFGYQELADLPHTNVVWRHVGM...PLFVNWMPLFYLAF-----LFIFGGFVT.KGFVLYFVAQYVNAFGVHFg...mqDl..fW............PLHLI.PFS.TFGDEMVVLFLVGRFLMFVKHVCFGCDKASCVACSKSARLTRVPMQTIVCGANKSFYVTANGGKN.FCSRHNFFCVNCDSHGPGNTFINEVVARELSNVVKSSVKPTDVAYLEVDKVEFNDGFYYLY..SGETF.W.RYNFDITDNKYSCKEALKSCNV........----LSDFIVYN-DAGSNITQVRNACVYFSQLLCKPIKLVNASLLSTL--NVDFNGALHSAFVNVLSDSFSRDLSNCST.MNECKQ.........................ALGF.EVS.......DDEFLNGVSDAHRYNVLLSDTSCNNLVTS.......YAKP.EEKLSVHDLGTCMRFGAKVVNHNVLIKENVPVVWLASEFHLLSEEGRKYIVKTTKAKGVTFLLTFNSNP-m..
D9J202_9ALPC/1906-2357                 .....................................................................k-VAC.SRYSSMY.ANSSF.VKSDVCSN.SILCKACLSSYEELSDFDHLRVVWDYKSD...PLWHKLVQLFYFGT-----LMIFGNNIV.RFCMLYFVAQLFNNWLSYYg...lvNy..sW............FLNMV.YFE.TVAAELVVIMAVIKVFFFLKHYWYGCDKADCKSCSKIAKQNRIPVNVVVNGSIKSVYVHTNGGTK.FCKRHNFYCKNCDSYGSDNTFICHEIVKDLSNIVKHSVYATDVSFKEVDKVECSDGFYRFY..TGDEY.T.RYNFDVTDKKFSCKEVLKSLQL........----LDDFVIYD-PNGTTPANLHNACVYWSQLLGKPIKLVNRDLIQSL--TVDFNGVLLEAHKRVVGNSFNVDVSNCKT.LRECYD.........................ACKT.DVP.......YHTFEDVVVHAHKYDVLMTDLSFNNFWLT.......YAKP.EDNLTSFDIANCIRANAKAVNHSVLSKENVPIVWSATDFVKLSSEAKHLLIKTAKAKGVTIMITLNTNVM...
E0ZN51_BCHK9/2118-2591                 .............................................................yvlvnetgt----.-------.-----.--------.GWLHHLCMAGMDNLD-YPALRMQQHRYGS...--PYDY-TYILMLLEAFLAYLLYTPALP.IVGVLAVLHLVVLYLPIPL.....gN...sWlvv.....flyyLIRLV.PFT.SMLRMYIVMAFLWLCYKGFLHVRYGCNNVACLMCYKKNVARRIECSTVVNGVKRMFYVNANGGTH.FCTKHNWNCVSCDTYTVDSTFISRQVALDLSAQFKRPILPTDEAYYEVTSVEVRNGYVYCY..FDSDG.Q.RSYERFPMDAFTNVSKLHYAEL.......kGAAPAFNVLVFDATNRIEENAVKAAAIYFAQLACKPILLVDKRMVGVVGDDATIAKAMFEAYAQNYLLKYNIAMDKVKH.LYSTALqqissgmtveavlkvfvgstrseakDLES.DVD.......TNDLVSCMRLCHQEGWDWTTDSWNNLVPT.......YIKQ.-DTLSTLEVGQFMTANARYVNANVAKGAAVNLVWRYADFVKLSESVRRQLRVAARKTGLNLLVTTSSLK-a..
A0A023YA54_MERS/2328-2824              .....................................................................t-SAC.DGVARDY.RANSF.DISNYCANrSVLCKWCLLGQDSITHYSALKMVQTHLSH...YV-LNV-DWMWFVLELLVAYALYTAAFN.WVLLACTLQYFFSQTSLFV......D....WrsynyvvsciylFFTHI.PLD.GLVRIYNVLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGAKRTFYITANGGTS.FCRKHNWNCVECDVAGIGSTFICEEVANDLTTTLRRLVKPTDKSHYYVESVLVKDTAVQFT..YDRDG.Q.TCYERFPLCHFSNMDKLKFKEVck....stTGIPEHNFIIYDASDRGQENLARSACVYYSQVLCKPILLVDSNLVTSVGDSCEIATKMFDSFVNSFVSLYNVTRDRLEK.LISTARdgikrgenlqpv.lktfidaargpaGVES.DVE.......TGEIVDAVQYAHKHDIQLTNEGYNNYVPS.......YVKP.-DSVATSDLGSLIDCNAASVNPANMRNANGACIWNAAAYFKLSDALKRQIRIACRKCNLNFRLTTSKLR-a..
R1AB_CVM2/2281-2769                    ...................................................................ftl---C.----DLY.QVSDVgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RVSFDYISLFKLVVELVIGYSLYTVCFY.PLFGLIGMQLLTTWLPEFFm...leTm..hWsar.....ffvfVANML.PAF.TLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTG.FCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLF..YERDG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSIMSAVNAGVDFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
A0A125R5A4_9ALPC/1930-2382             .....................................................................k-LAC.SGSVQAY.SNSSF.VKSEVCGN.SILCKACLASYDELADFDHLQVSWDYKSD...PLWNRVIQLSYFIF-----LAVFGNNYV.RCFLMYFVSQYLNLWLSYLg...yvKy..sW............FLHVV.NFE.SISVEFVIIVVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGK.LCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECSDGFYRFY..VGEEF.T.AYDYDVKHKKYSSQEVLKTMFL........----LDDFIVYS-PSGSSLASVRNVCVYFSQLIGRPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKS.LEECYK.........................ACNL.DVT.......FSTFEMAINNAHRFGILITDRSFNNFWPS.......KIKPgSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSSLSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
R1AB_IBVB/1782-2249                    .....................................................................g-SLC.-GPYKDY.GKDSF.DVLRYCAD.DFICRVCLHDKDSLHLYKHAYSVEQVYKDaasGFIFNW-NWLYLVF-----LILFVKPVAgFVIICYCVKYLVLNSTVLQtgvcflD....W............FVQTVfSHF.NFMGAGFYFWLFYKIYIQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN.FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLK..YKAAT.PgKDSASSAVKCFSVTDFLKKAVFlke.alkcEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQL-VVEPVSKSVIDKVCSILSSIISVDTAALNY.KAGTLR.........................DALL.SIT......kDEEAVDMAIFCHNHDVDYTGDGFTNVIPS.......YGID.TGKLTPRDRGFLINADASIAN--LRVKNAPPVVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSG---akq
B7U2M9_9BETC/2248-2736                 ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsvr.....llvsLANML.PAH.VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTG.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLF..YERDG.Q.RTYDDVNASLFVDYSNLLHSKV........KGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqickv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKG.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMA...
A0A1B3Q5W8_9BETC/2165-2640             ............................................................cdyltvnets----.-------.-----.-------E.GWFHHMCMSGMDGLD-YPALKMQQRRYGS...--PYDW-TYMVMFLEAFVAYLLYTPVLP.LVGIIGCLHALVLYLPISL.....gN...sWlvv.....ffyyFVKLI.PLS.SLLRMYIVSAFLWLCYKGFVHVRYGCTNVSCLMCYKRNIATRVECSTVVNGVKRVFYVNANGGTY.YCTKHNWNCVNCDTYTVDSTFISRPVALDLSAQFKRPINHTDEAYYEVTSVQVRNGYVYCY..FDSEG.E.QSYERFPVDSFTNVSKLYYSEL.......kGNPPAFNVLIFDATNRIEENAVKTAAIYYSQLACKPILLVDKRMVGVVGDDTAIAKTMFEAYAQSYLLKYNIAMDKVKS.LYATALhqiasgtsveavlkvfvgstreearDLES.DVD.......TNELVSCIRMCHQDGWEWTTASWNNLVPT.......YLKQ.-ETLSTLEVGQLITSNARYINANMAKSAAVQIVWRYADFARLSESVRRQLKIAARKTGLSLQLTTSNLK-a..
A0A059VJE6_9ALPC/2051-2502             ....................................................................gp--VC.DDVVAGY.ANSSF.DKNEYCN-.SVICKVCLYGYQELSDFSHTQVVWQHLRD...PLIGNVMPFFYLAF-----LAIFGGVYV.KAITLYFIFQYLNILGVFLg...lqQs..iW............FLQLV.PFD.VFGDEIVVFFIVTRVLMFLKHVFLGCDKASCVACSKSARLKRVPVQTIFQGTSKSFYVHANGGSK.FCKKHNFFCLNCDSYGPGCTFINDVIATEVGNVVKLNVQPTGPATILIDKVEFSNGFYYLY..SGDTF.W.KYNFDITDNKYTCKESLKNCSI........----ITDFIVFN-NNGSNVNQVKNACVYFSQMLCKPVKLVDSALLASL--SVDFGASLHSAFVSVLSNSFGKDLSSCND.MQDCKS.........................TLGFdDVP.......LDTFNAAVAEAHRYDVLLTDMSFNNFTTS.......YAKP.EEKLPVHDIATCMRVGAKIVNHNVLVKDSIPVVWLVRDFIALSEETRKYIIRTTKVKGITFMLTFNDCRM...
B8Q8U6_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVSMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
R1AB_BC512/2065-2516                   ....................................................................tp--IC.KRYTDGY.ANSTF.DKNDYCG-.NVLCKICLYGYEELSDFTHTRVIWQHLKD...PLIGNILPLFYLVF-----LIIFGGFFV.RIGITYFIMQYINAAGVALg...yqDn..vW............LLHLL.PFN.SMGNIIVVAFIVTRILLFLKHVLFGCDKPSCIACSKSAKLTRVPLQTILQGVTKSFYVNANGGKK.FCKKHNFFCVDCDSYGYGCTFINDVIAPELSNVTKLNVIPTGPATIIIDKVEFSNGFYYLY..SGSTF.W.KYNFDITEAKYACKDVLKNCNI........----LTDFVVFN-NSGSNVTQVKNACVYFSQLLCKPIKLVDSALLASL--NVDFSANLHKAFVEVLSNSFGKDLSNCSN.MNECRE.........................SLGLsDVP.......EEEFSAAVSEAHRYDVLISDVSFNNLIVS.......YAKP.EEKLAVHDIANCMRVGAKVVNHNVLTKDNVPVVWLAKDFIALSEEARKYIVRTTKTKGINFMLTFNDRRM...
B8Q8S5_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVSMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
T2B9I2_MERS/2227-2723                  .....................................................................s-SAC.DGLASAY.RANSF.DVPTFCANrSAMCNWCLISQDSITHYPALKMVQTHLSH...YV-LNI-DWLWFAFETGLAYMLYTSAFN.WLLLAGTLHYFFAQTSIFV......D....WrsynyavssafwLFTHI.PMA.GLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGIS.FCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFN..YRRDG.Q.PFYERFPLCAFTNLDKLKFKEVck....ttTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLITSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEK.LISTARdgvrrgdnfhsv.lttfidaargpaGVES.DVE.......TNEIVDSVQYAHKHDIQITNESYNNYVPS.......YVKP.-DSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLR-a..
H9TEX0_9ALPC/1919-2371                 .....................................................................k-LAC.NGAVQAY.KNSSF.VKSEVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWSRLVQLSYFAF-----LAVFGNNYV.RCVLMYFVSQYLNLWLSYFg...yvEh..sW............FLHVV.NFE.SISAEFVIIVIVVKAVLVLKHIVFSCSNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGK.LCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHHEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKNMLL........----LDDFIVYS-PSGSSLANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYR.........................ACNL.DVS.......FSTFEMAVNNAHRFGVLITDRSFNNFWPS.......KVKPgSAGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
B1PHJ4_9ALPC/2208-2658                 .....................................................................d-YFC.KDHVEGY.SNSTF.VKDEYCA-.STMCKVCLLGFQELADLPHTKVVWKYVGF...PIFVNWLPFLYLAF-----LFTFGGIFV.KGLVCYFFAQYVNTLGVYFg...mqEk..fW............PLQII.PFD.IFGDEIVVTFIVYKALMFIKHVCFGCEKPSCVACSKSARLNRVPMQTIVNGANKLFYVVANGGSS.YCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGESFIEVDKVSFENGSYYLY..SGETF.W.RYNFDVTEAKYGCKEVLKNCNV........----LSDFIVYN-NTGTNVSQIRNACVYFSQMLCKPIKLVDATLLSTL--NVDFNGALHSAFVQVLNDSFSKDLSSCAS.MTECKQ.........................ALGF.DVS.......DEEFVDAVSNAHRFNVLLSDNSFNNLLTS.......YAKP.EEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNTNAM...
A0A0P0LKV0_CVH22/2023-2474             .....................................................................n-YFC.DATVSGY.AKSNF.VKDDYCGN.SLGCKMCLFGYQELNQFHHLAVVWKHITD...PLFSTMQPFIVMVL-----LLIFGDNYL.RCFLLYFVAQMISNVGVFLgy.ketN....W............FLHFI.PFD.AICDELLVTIIVIKVIAFIRHVIFGCDKPGCIACSKSARLKRFPVSTIVNGVQRSFYVNANGGSK.FCKKHNFFCVDCDSYGYGNTFITQEVSRELGNITKTNVQPTGPSYIMIDKVEFENGFYRLH..AGETF.W.RYNFDITESKYSCKEVLKNCNA........----LDDFIVFN-NSGTNVTQVKNASVYFSQLLCRPIKLVDSELLATL--SVDFNGVLHRAYIDVLRNSFGKDLNANMS.LADCKS.........................VLGL.SVS.......DHEFTNAISNAHRCDVLLSDLSFNNFVSS.......YAKP.EEKLSSYDLACCMRAGAKTVNANVLTKDQTPIVWHARDFNSLSAEGRKYIVKTSKAKGLTFLLTLNENQ-a..
A0A0U1UZ65_BCHK4/2280-2776             .....................................................................r-TLC.DGLAVEY.RNTSF.DVVDFCSNrSVLCQWCLIGQDSLTRYSALQMLQTHITS...YV-LNI-DWIWFAFEFLLAYVLYTSSFN.VLLLVVTAQYFFAYTSAFV......N....WraynyivsglffLVTHI.PLH.GLVRVYNFFACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGIKRTFYIAANGGIS.YCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELH..YNRDG.S.SCYERYPLCYFTNLEKLKFKEVck....tpTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDANLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEK.LINTARdcvrrgddfqnv.lktftdaarghaGVES.DVE.......TTMVVDALQYAHKNDIQLTTECYNNYVPG.......YIKP.-DSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR-a..
Q0ZJB1_CVHK1/2335-2823                 .................................................................vticd----.-----FY.SKLGVgFTSHFCNG.SFICELCYSGFDMLDTYAAIDFVQYEVDR...RVLFDYVSLVKLIVELVIGYSLYTVWFY.PLFCLIGLQLFTTWLPDLFm...leTm..hWlir.....fivfVANML.PAF.VLLRFYIVVTAMYKVVGFIRHIVYGCNKAGCLFCYKRNCSVRVKCSTIVGGVIRYYDITANGGTG.FCVKHQWNCFNCHSFKPGNTFITVEAAIELSKELKRPVNPTDASHYVVTDIKQVGCMMRLF..YDRDG.Q.RVYDDVDASLFVDINNLLHSKV........KVVPNLYVVVVE--SDADRANFLNAVVFYAQSLYRPILLVDKKLITTACNGISVTQTMFDVYVDTFMSHFDVDRKSFNN.FVNIAHaslregvqlekv.ldtfvgcvrkccSIDS.DVE.......TRFITKSMISAVAAGLEFTDENYNNLVPT.......YLKS.-DNIVAADLGVLIQNGAKHVQGNVAKAANISCIWFIDTFNQLTADLQHKLKKACVKTGLKLKLTFNKQE-a..
U5LR11_9BETC/2292-2788                 .....................................................................t-SVC.DGFSNNY.RNVSF.NRDDYCEKfGYVCHWCLMGQDSLTHYSAIQIVQTNLSH...YV-LSI-DWMWFWIELSVAYLMYTPAFN.WVLLVCTLQYFFSQTNHII......N....WrsynfvmsgvylLTTYI.PLC.GLLRVYNVLATLWYLRRFYNHVINGCKDTACMLCYKRNRLTRVEASTVVCGVKRTFYITANGGIS.FCSRHNWNCVDCDTTGLGHTFICEEVANDLTTSLRRLVKPTDRSHYYVESVEVKNSVVQLN..YTRDG.Q.LCYERVPLCNFSNIDKFKFKEVck....stTGIPEFNFVIYDSTDRGQENLARSACVYYSQVLCKSILLVDSNLMNTVGDSSAIAIRLLDSFINSFASLYNVSRDKLEK.LISTAKdcvkrgedlqsv.lktfiqaarvhaNVES.DVE.......TASIVDGIQYAHKNDIELVTDSFNNYIPS.......YVKP.-DSIATVDLGCLIDLKAASVNPASMRNANGACVWNIDAYLKLSDSLKRQIRVACRKCSLNFKLTTSKLR-a..
R1A_BCHK4/2272-2768                    .....................................................................r-TLC.DGLVVEY.RNTSF.DVMEFCSNrSVLCQWCLIGQDSLTRYSALQMLQTHITS...YV-LNI-DWIWFALEFFLAYVLYTSSFN.VLLLVVTAQYFFAYTSAFV......N....WraynyivsglffLVTHI.PLH.GLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTS.YCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELH..YNRDG.S.SCYERYPLCYFTNLEKLKFKEVck....tpTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEK.LINTARdcvrrgddfqnv.lktftdaarghaGVES.DVE.......TTMVVDALQYAHKNDIQLTTECYNNYVPG.......YIKP.-DSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR-a..
A0A140ESF0_9NIDO/1546-1981             .....................................................................g-WPC.-----NYnATQHF.DYNSYCAG.DLVCQACFDGQDSLHLYPHLRVNQQPLQT...---TDYTVYALSLILLLANMTLVMGTLI.VTFFVNFYGVQIPFYGTLL......-....-............----I.DYQ.SALVITFSVYYFYKVMKFFRHLTHGCKIPTCVVCAKLRTPPTITVETVVQGRKYPSVIETNGGFT.ICKEHNFYCKDCSLQTPG-TFIPTEAIESLSRATRLSVKPTAPAFLLARDVECQTDVV---..VARAM.H.NQNAHVCISKYSDIRTVDQLLKpt....plFSYTPDVIIAADFDNRGSLKTAKELAVVLSMDLKRTIIIIDQAYSRPIDNYQEVASRIEKYYPV-------------AK.ITPTG-.........................DIFT.DIKqatngqaSDSAINAAVLAVQRGLDFTIDNPNNILPH.......YAFD.FSTLNAEDQSTILESGCA---KGNLKGTNVGVVLSASLVTRLSQQAIRVIANAASRNGVTCAVTPSTLVM...
R1A_CVMA5/2335-2823                    ...................................................................sti---C.----DFY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RLSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLIGMQLLTTWLPEFFm...leTm..hWsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLF..YERDG.Q.RVYDDVNASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSVMSAVNAGVDFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
R1A_CVHOC/2248-2736                    ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsfr.....llvaLANML.PAH.VFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTG.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLF..YDRDG.Q.RIYDDVNASLFVDYSNLLHSKV........KSVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqiykv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKS.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMA...
A0A0U1UZC3_9ALPC/1927-2378             ......................................................................KYFC.DGYVAGY.ANSTF.VKKDFCNG.GLVCDACLHGFDQLSDFSHLNVKWDYITV...PFALKVYPSVVAFL-----LFLFGGVYV.KFMMLYVLAQYVNTFGVYFg...fqDy..fW............VVHII.PFD.VFCDEILAIFCAVKGLLFLKHVIMGCDSPSCIACSKSARLRRVPMTTVVNGANKSFYVTANGGTK.FCTKHNFFCVDCGSYGNNSTFINDHVARELSNVVKTSVRPTGPAYIEIDRVDFSNGFYRLY..SGDTF.W.RYNYDITESKFSCKEVLKNCNT........----VDDFIVYN-NTGTNVTQVRNACVYLSQLMCRPIKLVDAQLLSSL--NVDFNGALHKAFVEVLQNSFSVDLADCNT.MSECKE.........................RIGL.DVS.......DDEFLAAVTNAHRYDVLLSEVSFNNFITS.......YAKP.EEKLSAFDCAQCVRAGAKIVNHNVIVKEKLSIVWLAKDFQALSAEGRKYIVKTSKVKGLNFILTLNDNA-a..
B8Q8S4_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVSMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
F2YDB1_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQVLVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
H9BZX6_9BETC/2336-2824                 ................................................................pticdf----.------Y.QVTGLgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RVSFDYISLLKLVVELIIGYSLYTVCFY.PLFVLIGMQLLTTWLPEFFm...leTm..hWsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCDSWKPGNTFITHEAAADLSRELKRPVNPTDAAYYSVTEVKQVGCSMRLF..YERAG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSQTMFDLYVDSLLNVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSIMSAVNAGVEFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQSNAKHVQANVAKAANVACIWSVDVFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
B8Q8U7_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVSMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
A0A0U2UMS4_9ALPC/1916-2368             .....................................................................k-LTC.NGAVQAY.KNSSF.IKSAVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWNRLVQLSYFAF-----LAVFGSNYV.RCFLMYFVSQYLNLWLSYFg...yvEy..sW............FLHVV.NFE.SISAEFVIVVIVVKAVLALKHIVFSCSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGK.FCKKHNFYCKNCESYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKNMLL........----LDDFIVYS-PSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYR.........................VCNL.NVS.......FSTFEMAVNNAHRFGILITDRSFNNFWPS.......KVKPgSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A0K1YZY7_SARS/2237-2726              ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSRDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRGNNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDIFSSTFSVPMEKLKA.LVVTAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
S5Z1D1_9ALPC/2093-2544                 .....................................................................d-IFC.SGYVDGY.ANSSF.DKNAYCD-.GQLCKVCLFGYDELADFPHTTVVWEHLKD...PFVINVIPLFYLGF-----LAIFGGTVT.RIMVLYFVSQYVNMLGAYLg...vqDs..vW............FLQFF.PFD.VFGDEIVVLFLVVRVLMFLKHVLFGCDKPSCLACSKSARLKRVPVSTIVSGANKSFYVNANGGTS.FCKKHNFYCVNCDSYGLGCTFINDVVAAEVGNVTKLNVQATGPAFVEVDKVEFNNGFYYLY..SGNTF.W.KYNYDITDSRYSCKEALKTCNV........----AADFIICN-NTGSNMAQVKNACVYFSQLLCKPIKIVDSTLVSTL--GVDFSTSIHSAFVEILTDSFGKDLSNCTT.MSQCRA.........................TLGFdDIS.......DEDFTGAVANAHRYGLLLTDISFNNFITS.......YAKP.EEKMSVHDLAICMRSGARVANHNVLVKENVPVVWSAEAFNALSEESRKYVVKTSKVKGLTFMLSFNNVRM...
A0A0K2RVJ3_9BETC/2283-2771             ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsvr.....llvsLANML.PAH.VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTA.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLF..YERNG.Q.RTYDDVNASLFVDYSNLLHSKV........KGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqickv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKS.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMA...
H9BR34_9NIDO/1447-1883                 .....................................................................g-WPCnYNGTIPY.DYQSF.-----CVGqPLTCMACFDGYDSLHLYQHLHINQVPVKD...---IDYTTIAAFIVLLVANATLALVTTI.IIFCVNFYKFTLPFYGVVI......-....-............----L.DYY.NTLTFVFGVSYTIRLIRFFRHVSKGCKSPTCTICSRIRTSPTITVETIVQGRKYPSTIITNEGSV.VCKQHNFYCKNCDAINPD-TFIPVEAVESLAKVTKLDVKSTAPAYVLARDVECQSDAI---..VARAI.I.GGTHKVCVSKYSDVRTVEALLKpv....plYSYTSDVIIAVDFDNSGSLRTAKELAVVLSMDLKRTIFIIDQHYSRPIDNYTEVCSRIEKYFTI-------------NK.ITPTG-.........................DIFV.DVRnatngqvTDSAINAAIIAVERGLDFTIDEPNHVLPH.......YAFD.FSSLSVEDQSVLLDMGCV---KGNLKGTNVGVVLTANLVTRLTQQALRVISNAASRNGVTCSVTPSTRV-l..
Q06BE1_9BETC/2248-2736                 ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsvr.....llvsLANML.PAH.VFMRFYIIIASFIKLFSLFRHVAYGCSKPGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTG.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCYMRLF..YERDG.Q.RTYDDVNASLFVDYSNLLHSKV........KGVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqickv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKG.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQMA...
A3EXC0_BCHK4/2282-2778                 .....................................................................r-TLC.DGLVVEY.RNTSF.DVMEFCSNrSVLCQWCLIGQDSLTRYSALQMLQTHITS...YV-LNI-DWIWFALEFFLAYVLYTSSFN.VLLLVVTAQYFFAYTSAFV......N....WraynyivsglffLVTHI.PLH.GLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTS.YCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELH..YNRDG.S.SCYERYPLCYFTNLEKLKFKEVck....tpTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEK.LINTARdcvrrgddfqnv.lktftdaarghaGVES.DVE.......TTMVVDALQYAHKNDIQLTTECYNNYVPG.......YIKP.-DSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR-a..
H9BQZ9_9NIDO/1556-1991                 .....................................................................g-WPC.-----NYnATQHF.DYNSYCAG.DLVCQACFDGQDSLHLYPHLRVNQQPIQA...---ADYTVYALSIILLLANMTLVVGTLL.VTLFVNFYGLQIPFYGTLE......-....-............----I.DYQ.SALVLTFSVYYFYKVMKFFRHLTHGCKTPTCAVCAKLRTPPTITVETVVQGRKYPSVIETNGGFT.ICKEHNFYCKDCSAQTPG-TFIPTEAIESLSRATKLSVKPTAPAFLLARDVECQTDVV---..VARAM.H.NQNAHVCISKYSDIRTVDQLLKpt....plFSYTPDVIIAADFDNRGSIKTAKELAVVLSMDLKRTIIIIDQTYSRPIDNYQEVASRIEKYYPV-------------AK.INPTG-.........................DIFA.DIKqatggqaSDSAINAAVLAVQRGLDFTIDNPNNILPH.......YAFD.FSTLNAEDQSTILESGCA---KGNLKGTNVGVVLSASLVTRLSQQAIRVIANAASRNGVTCAVTPSTLVM...
B6VDX7_THCOV/1525-1961                 ....................................................................gt--PC.----AAY.MNEDHtDYQSFCAG.DLTCLVCFNGMDSLHLYKHLHVSQKVYET...---FDYTPYALALVLLLANTTLVICTML.CVFLFNIYKFTVPYYGVVT......-....-............----L.DYQ.NTLTFVFVVYYMWCVIRFFRHLARGCKTPTCSICSKLRISPTIIVDTIVQGRKYPSIVHTNAGFK.ICPEHNFYCKNCTGENPD-TFIPTEAIESLSRVTKLSVKPTAPAYLLARDVECQTDAI---..VARAT.H.GGQSMVCISKYSDVRTVDALLKpt....plFSYTPDVIIAADFDNAGSLKTAKELAVVLSMDLKRTIFIIDQSYSMPVDNYTEVVSRMEKYYTF-------------QK.ITPTG-.........................DIFM.DVKtathgqaTDSAINAAILAVQKGLDFTIDDPNHILPH.......YAFE.FSNLAVEDQSILIETGCA---KGKLKGTNVGVILAANLVERLSQSAIRVISNAASRNGVTCSVTPSTMV-l..
H9BR16_9NIDO/1514-1959                 ................................................................tsvcsi----.-DIIPKY.EEAKPyNLESFCSDkPYYCMPCLQGKDSIHFYKHLVVQYTTSMG...YD-INVTLWSLIVVLLYFKPLLFIVTTS.VVTFINSMEFYIPFYGTYS......-....-............----L.TYT.NTYITVIIINLMYKSFCFVKHLVSGCSKTGCSICAKKSVYTVLNVETVIQGRKFVSQVSTNGGTK.FCEKHNFYCLNCDNPMDDGTFIPVEAVESLSKATNTHVKPTSVAYAMSRDITCNGDVF---..MANVT.I.NGKNIVTCNKYTDVRTVDQLKKpd....llSNYPQDVVIACDFENVAAVNLPNQMAAPMSMVLRRFVLIIDQQHTKPVNSYEQVKN-LLNEFFS-----FQ-DLTQTGDlIADVKN.........................ATNN.QVS.......-DTAICAAKFAVDNGLDLTMDNPNNTVPH.......YAFD.FNSLPSEDKSTLMDFGIG---SSVLKGTSYNIILPYNLLVKLSVKTIIKLKSAAMKNGVKLLVTPSTRV-i..
B2BW31_9GAMC/1739-2217                 .....................................................................g-YLC.-YDYNTY.SDYHF.NVFDYCN-.GTLCELCLSGVDSLHLYKHAKTTYQKVVT...------TDFVGYAPLYFILQAVFFKSAA.MLSGLLFMIKFTINFGVFN......T...gIyiv......dyvVSTIA.NTI.DPIMISTIVCGMIKLYRIANHYFYGCKNPACDKCHAATVSERTELSCVVGSKRFPYYVYANSVAK.MCGKHMWCCKNCDVFGEGNTFISTAIVGDLTDKIRRKVKATSEALAIATLIEEGDNYELHYklNGAEG.S.RVY---------DKNQFWNCAIpvsdaskcGKFEPDNFITYNASSQSELSLAKQCAVYYAQVLSRPTIIV--PLSQEEYTSGKVTRTQVTRLLDLCDDYYGISDAEVKM.SVIKSNtgatlsaav......qqyvakivpsQVMNlDV-.......-----DFLLFCDRYGLTPSQAAYNNAVPNstcnldaYEGEqFLRVKEQVKSAFVQFGVKYVDFKMALNDSKIAILQYDFLKSLPGNYLPSLLMRIRQAGVTLRVTTSQIMQ...
A8JNZ0_9ALPC/1997-2448                 .....................................................................d-YIC.GSAVRGY.ASSDF.DKSKFCNG.SLVCKTCLFGYQELSEFQHVGVVWSYVRE...PLFASVLPLCYFAV-----IAIFGGVVE.RFALCYFAAQFINNVLSFLk...lqDs..fW............LVQLV.PFD.IFGDEILVMFLSYKAICFFKHVVFGCDKPSCVACCKSAKLKRIAMDTIVNGSRRSFYVNANGGAK.LCKKHNFFCVACDSYGSGHTYINDHIANELHNVTKLHVKPTGPAFINVDRVEFSDGFYRIF..SGDKF.W.KYNFDITDKKFSCKEVLKNCNI........----LDDFIVFD-NNGSNLSQVQNACVYLSQLLCKPIKIIDSTLLSSL--NVDFNGALHKAFLDVLHNSFGKDFSSCKT.MHDCKE.........................LLEL.DVS.......DDDFIKVVSDAHRFDVLITDTSFNNFCTS.......YAKP.AEKLSSFDLAHCMRSGAKVVNHNVLIKEKMPIVWNCVDFAKLSVDARKYIVKTAKVKGVTFLLTVNNNVM...
R1AB_BCHK9/2122-2596                   ............................................................dyvlvnetgt----.-------.-----.--------.GWLHHLCMAGMDSLD-YPALRMQQHRYGS...P--YNY-TYILMLLEAFFAYLLYTPALP.IVGILAVLHLIVLYLPIPL.....gN...sWlvv.....flyyIIRLV.PFT.SMLRMYIVIAFLWLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTH.FCTKHNWNCVSCDTYTVDSTFICRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCY..FESDG.Q.RSYERFPMDAFTNVSKLHYSEL.......kGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVVGDDATIARAMFEAYAQNYLLKYSIAMDKVKH.LYSTALqqissgmtvesvlkvfvgstraeakDLES.DVD.......TNDLVSCIRLCHQEGWEWTTDSWNNLVPT.......YIKQ.-DTLSTLEVGQFMTANAKYVNANIAKGAAVNLIWRYADFIKLSESMRRQLKVAARKTGLNLLVTTSSLK-a..
U5KNA9_9BETC/2292-2788                 .....................................................................t-SVC.DGFSNNY.RNVSF.NRDDYCEKfGYVCHWCLMGQDSLTHYSAIQIVQTNLSH...YV-LSI-DWMWFWIELSVAYLMYTPAFN.WVLLVCTLQYFFSQTNHII......N....WrsynfvmsgvylLTTYI.PLC.GLLRVYNVLATLWYLRRFYNHVINGCKDTACMLCYKRNRLTRVEASTVVCGVKRTFYITANGGIS.FCSRHNWNCVDCDTTGLGHTFICEEVANDLTTSLRRLVKPTDRSHYYVESVEVKNSVVQLN..YTRDG.Q.LCYERVPLCNFSNIDKFKFKEVck....stTGIPEFNFVIYDSTDRGQENLARSACVYYSQVLCKSILLVDSNLMNTVGDSSAIAIRLLDSFINSFASLYNVSRDKLEK.LISTAKdcvkrgedlqsv.lktfiqaarvhaNVES.DVE.......TASIVDGIQYAHKNDIELVTDSFNNYIPS.......YVKP.-DSIATVDLGCLIDLKAASVNPASMRNANGACVWNIDAYLKLSDSLKRQIRVACRKCSLNFKLTTSKLR-a..
R1AB_SARS/2237-2726                    ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
A0A088DIE1_9BETC/2398-2888             .....................................................................g-TVC.DKFQTAY.NNSGIyDATEYCTGkSFMCSLCLRGMDSLNFYTELSTSQKTVSW...SS-FDF-SNINTAAEWCLAYLLYTKMFV.VLLATAIFQWFAVYFGLYLt....qS...sWlmw.....tmvrVISLV.PTS.ILVRMYIYCASFYFVYRAYVHVVSGCQDTRCLMCYKRNLARRVECHTVVQGSRKSFYVHANGGTG.FCEKHAWNCINCDSYGPGNTFICDEVAVDLSTTFKRPVKPTDKSHYFVDSVEVKDTFVHLY..YSKND.T.RVYDRYPLSVFSSVDFLKLANI........KTMPSTNVLVFDASNKTEENTTVAASVYYSQLCCQPMLLIEQKLLSNIGDATEVSKKMLDAYIEKFMSTFGVTMEKLKT.FVSAAKnslndgvplek..vlkefvaaakqnCAET.DVE.......ADSIVNALQLTFKDDVDITKDSYNDFVLT.......YNKV.-DSMTPYDLGVCIEVGARHVNANVAKANAAALIWNIDHYLLLSESFRRQIRSSARKNGLQFKLTCSKNRQ...
R1AB_CVMJH/2338-2826                   .................................................................lticd----.-----FY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYESINVVQHVVDR...RVSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLVGMQLLTTWLPEFFml.gtmH....Wsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLF..YERDG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfvgcarrkcAIDS.DVE.......TKSITKSVMAAVNAGVEVTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQE-a..
D9J203_9ALPC/1906-2357                 .....................................................................k-VAC.SRYSSMY.ANSSF.VKSDVCSN.SILCKACLSSYEELSDFDHLRVVWDYKSD...PLWHKLVQLFYFGT-----LMIFGNNIV.RFCMLYFVAQLFNNWLSYYg...lvNy..sW............FLNMV.YFE.TVAAELVVIMAVIKVFFFLKHYWYGCDKADCKSCSKIAKQNRIPVNVVVNGSIKSVYVHTNGGTK.FCKRHNFYCKNCDSYGSDNTFICHEIVKDLSNIVKHSVYATDVSFKEVDKVECSDGFYRFY..TGDEY.T.RYNFDVTDKKFSCKEVLKSLQL........----LDDFVIYD-PNGTTPANLHNACVYWSQLLGKPIKLVNRDLIQSL--TVDFNGVLLEAHKRVVGNSFNVDVSNCKT.LRECYD.........................ACKT.DVP.......YHTFEDVVVHAHKYDVLMTDLSFNNFWLT.......YAKP.EDNLTSFDIANCIRANAKAVNHSVLSKENVPIVWSATDFVKLSSEAKHLLIKTAKAKGVTIMITLNTNVM...
A0A0U1UZA8_9ALPC/2207-2657             .....................................................................d-YFC.KDHVEGY.SNSTF.VKDEYCA-.STMCKVCLFGFQELADLPHTKVVWKYVGF...PIFVNWLPFLYLAF-----LFTFGGIFV.KGLVCYFFAQYVNTFSVYFg...mqEk..fW............PLQII.PFD.IFGDEIVVTFIVYKALMFIKHVCFGCEKPSCVACSKSARLNRVPMQTIVNGANKSFYVVANGGSS.YCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGESFIEVDKVSFENGFYYLY..SGETF.W.RYNFDVTEAKYGCKEVLKNCNV........----LSDFIVYN-NNGTNVSQIRNACVYFSQMLCKPIKLVDATLLSTL--NVDFNGALHSAFVQVLNDSFSKDLSSCAS.MTECKQ.........................ALGF.DVS.......DEEFVDAVSNAHRFNVLLSDNSFNNLLTS.......YAKP.EEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNTNAM...
R1AB_CVHOC/2248-2736                   ....................................................................vt--IC.----DLY.SIQDVgFKNQYCNG.SIACQFCLAGFDMLDNYKAIDVVQYEADR...RAFVDYTGVLKIVIELIVSYALYTAWFY.PLFALISIQILTTWLPELFml.stlH....Wsfr.....llvaLANML.PAH.VFMRFYIIIASFIKLFSLFKHVAYGCSKSGCLFCYKRNRSLRVKCSTIVGGMIRYYDVMANGGTG.FCSKHQWNCIDCDSYKPGNTFITVEAALDLSKELKRPIQPTDVAYHTVTDVKQVGCSMRLF..YDRDG.Q.RIYDDVNASLFVDYSNLLHSKV........KSVPNMHVVVVE--NDADKANFLNAAVFYAQSLFRPILMVDKNLITTANTGTSVTETMFDVYVDTFLSMFDVDKKSLNA.LIATAHssikqgtqiykv.ldtflscarkscSIDS.DVD.......TKCLADSVMSAVSAGLELTDESCNNLVPT.......YLKS.-DNIVAADLGVLIQNSAKHVQGNVAKIAGVSCIWSVDAFNQFSSDFQHKLKKACCKTGLKLKLTYNKQMA...
R1A_SARS2/2260-2749                    ....................................................................ps--YC.TGYREGY.LNSTNvTIATYCTG.SIPCSVCLSGLDSLDTYPSLETIQITISS...FK-WDL-TAFGLVAEWFLAYILFTRFFY.VLGLAAIMQLFFSYFAVHFi....sN...sWlmw.....liinLVQMA.PIS.AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKG.FCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY..FDKAG.Q.KTYERHSLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT.LVATAEaelaknvsldn..vlstfisaarqgFVDS.DVE.......TKDVVECLKLSHQSDIEVTGDSCNNYMLT.......YNKV.-ENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTR-q..
A0A0K1RLM9_9ALPC/1914-2366             .....................................................................k-LTC.DGAVQAY.KNSSF.IKSAVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWSRLVQLSYFAF-----LAVFGNNYV.RCFLMYFVSQCLNLWLSYFg...yvEy..sW............FLHVV.NFE.SISAEFVIIVIVVKAVLALKHIVFSCSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGK.FCKKHNFYCKNCESYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKNMLL........----LDDFIVYS-PSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYK.........................ACNL.NVS.......FSTFEMAVNNAHRFGILITDRSFNNFWPS.......KIKPgSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A240FW17_9ALPC/1629-2072             ...................................................................ldh----.-SYYDEY.SQSNF.NKKEFCGK.NFWCYLTLWNVDGLEDFPHLNIQWNVFKG...GFSFTILPLFYMAI-----MFCFGNFYL.QGFLIAMLFQWFGSVMGLS......I....E............VLDIV.NLT.QFLEPVFCCFIFVKIFRFFHHVVFGCTKSFCKYCSKAAKQKKFLVSTIVNGSSKSFYVNANGGGK.FCNKHNFYCKGCESYGVGNTFINESVADYLSDYVKHRVVATAPALKVVDKVAFENGKWKLY..VGDEF.I.SITEDLTSSSYTIESVLKNNLM........----ASNVVVVS--DNSNMGVVDNACVYYSQLFCKPIFVVDRQLLLSF--DIDYNTAVFDSLIKVCANSFNKDFTNCKT.LEDCKK.........................ELDF.SVN.......TQAFVDAVKMAHKYDVLLTDRSYNNFTIT.......YAKI.GDKLSKTDQAACLRANVGIINHNVAVKENISVVWYYKNFLQLSEEGKKYIVKTTKAKGVGFYITFNDIE-a..
H9BZX5_9BETC/2337-2824                 ............................................................ticdfyqvtg----.-------.----LgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RVSFDYISLLKLVVELIIGYSLYTVCFY.PLFVLIGMQLLTTWLPEFFm...leTm..hWsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCDSWKPGNTFITHEAAADLSRELKRPVNPTDAAYYSVTEVKQVGCSMRLF..YERAG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSQTMFDLYVDSLLNVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSIMSAVNAGVEFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQSNAKHVQANVAKAANVACIWSVDVFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
A0A0K1Z0N1_SARS/2237-2726              ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSRDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRGNNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDIFSSTFSVPMEKLKA.LVVTAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
A3EXI9_BCHK9/2118-2591                 .............................................................yvlvnetga----.-------.-----.--------.GWLHHLCMAGMDGLD-YPALRMQQHRYGS...--PYDY-TYVLMLLEAFCAYLLYTPALP.IVGILAVLHLIVLYLPIPL.....gN...sWlvv.....flyyIIRLV.PFT.SMLRMYIVIAFLWLCYKGFLHVRYGCNNVACLMCYKKNVAKRIECSTVVNGVKRMFYVNANGGTY.FCTKHNWNCVSCDTYTVDSTFISRQVALDLSAQFKRPIIHTDEAYYEVTSVEVRNGYVYCY..FESDG.Q.RSYERFPMDAFTNVSKLHYSEL.......kGAAPAFNVLVFDATNRIEENAVKTAAIYYAQLACKPILLVDKRMVGVVGDDATIAKAMFEAYAQNYLLKYSIAMDKVKH.LYSTALqqissgmtveavlkvfvgstrteakDLES.DVD.......TNDLVSCIRLCHQEGWDWTTDSWNNLVPT.......YIKQ.-DTLSTLEVGQFMTANARYVNANVAKGAAVNLVWRYTDFIKLSESVRRQLRVAARKTGLNLLVTTSSLK-a..
B1PHI6_9ALPC/2264-2714                 .....................................................................e-YFC.KEHVEGY.GNSTF.VKDEYCA-.STMCKVCLFGYQELADLPHTKVVWKYVGF...PIFVNWLPFLYLAF-----LFIFGGIFV.KGLVCYFLAQYVNNFGVYFg...mqEt..fW............PLQVI.PFN.VFGDEIVVTFLVYKALMFIKHVCFGCDKPSCVACSKSARLTRVPMQTIVNGANKSFYVVANGGSS.YCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGDSFIEVDKVSFENGFYYLY..SGETF.W.RYNFDVTDAKYGCKEVLKNCNV........----LADFIVYN-NTGSNVSQIRNACVYFSQMLCKPIKLVDATLLSTL--NVDFNGALHSAFIQVLNDSFSKDLSSCAS.MTECKQ.........................ALGF.DVS.......DEEFVNAVSNAHRFNVLLSDNSFNNLLTS.......YAKP.EEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNSNAM...
H9BR24_9NIDO/1520-1952                 .....................................................................g-LPC.DVVEPPY.NMATY.-----CADkGIFCQPCLSGYDSLHFYQHLKVQQIPVKV...---DLFWTYAVHIVATFSNPYLVLGTLL.LVFVLNMYNVEVMFFGVIQ......-....-............----L.PYW.PVVYIVLALFYLYKVYMYLQHISVGCKKPTCKLCIKKNIAKRVTVEVVLQGRKHYTMVNTNGGTN.FCDKHDFFCENCEKGGVDGTYIPIEVIESLSKATGLAPKPTGPAYVISTDVTHQGEFI---..QARGA.V.GGRTLTTVFRQSDVVTTNQVAK........STYSPNVVIAANLSDAGALRNAKEYAVLLSIELGRVIFIVDHSYDTKQDNFNAVKAALEKFYVF-------------KD.IISTG-.........................DLAS.DVAratdglvTDDVLNAALVSIERDIEFTVDPPNNTIPH.......YAFD.FASIMPEDQALLKQHECG---SGVMKGTGINCVLSANLVKLLAPKTLVKLRNAASRNGIRLCVSPCTRV-l..
A3EXE7_BCHK5/2317-2813                 .....................................................................h-SLC.DGMVEAY.RNVSY.DVNDFCSNrSALCNWCLIGQDSLTRYSAFQMIQTHVTS...YV-INI-DWVWFVMEFALANVLYTSTFN.VLLLVVSSQYFFSYTGAFV......N....WrsynylvsgyffCVTHI.PLL.GLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTS.FCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLH..YSREG.A.SCYERYPLCYFTNLDKLKFKEVck....tpTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDK.LVATARdcikrgddfqtv.iktftdaargpaGVES.DVE.......TSSIVDALQYAHKHDMQLTTEGFNNYVPS.......YIKP.-DSVATADLGCLIDLNAASVNHTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLR-s..
R1A_CVM2/2281-2769                     ...................................................................ftl---C.----DLY.QVSDVgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RVSFDYISLFKLVVELVIGYSLYTVCFY.PLFGLIGMQLLTTWLPEFFm...leTm..hWsar.....ffvfVANML.PAF.TLLRFYIVVTAMYKIFCLCRHVMYGCSRPGCLFCYKRNRSVRVKCSTVVGGTLRYYDVMANGGTG.FCAKHQWNCLNCSAFGPGNTFITHEAAADLSKELKRPVNPTDSAYYLVTEVKQVGCSMRLF..YERDG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLNAAVFYAQSLYRPMLLVEKKLITTANTGLSVSQTMFDLYVDSLLGVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSIMSAVNAGVDFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
A0A0U1UZ20_9ALPC/2170-2620             .....................................................................e-TLC.KDHVDGY.ANSTF.VKDDYCN-.SALCRVCLFGYQELADLPHTNVVWRHVGM...PLFVNWMPLFYLAF-----LFIFGGFVT.KGFVLYFVAQYVNAFGVHFg...mqDl..fW............PLHLI.PFS.TFGDEMVVLFLVGRFLMFVKHVCFGCDKASCVACSKSARLTRVPMQTIVCGANKSFYVTANGGKN.FCSRHNFFCVNCDSHGPGNTFINEVVARELSNVVKSSVKPTDVAYLEVDKVEFNDGFYYLY..SGETF.W.RYNFDITDNKYSCKEALKSCNV........----LSDFIVYN-DAGSNITQVRNACVYFSQLLCKPIKLVNASLLSTL--NVDFNGALHSAFVNVLSDSFSKDLSNCST.MNECKQ.........................ALGF.EVS.......DDEFLNGVSDAHRYNVLLSDTSCNNLVTS.......YAKP.EEKLSVHDLGTCMRFGAKVVNHNVLIKENVPVVWLASEFHLLSEEGRKYIVKTTKAKGVTFLLTFNSNP-m..
Q6UZF5_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
F2YDB2_SARS/2237-2726                  ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQVLVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
R1A_CVH22/2019-2469                    .....................................................................n--FC.SETVNGY.AKSNF.VKDDYCDG.SLGCKMCLFGYQELSQFSHLDVVWKHITD...PLFSNMQPFIVMVL-----LLIFGDNYL.RCFLLYFVAQMISTVGVFLgy.ketN....W............FLHFI.PFD.VICDELLVTVIVIKVISFVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSK.FCKKHRFFCVDCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLY..SCETF.W.RYNFDITESKYSCKEVFKNCNV........----LDDFIVFN-NNGTNVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFGKDLNANMS.LAECKR.........................ALGL.SIS.......DHEFTSAISNAHRCDVLLSDLSFNNFVSS.......YAKP.EEKLSAYDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQ-a..
E0ZN59_BCHK9/2097-2571                 ............................................................dyvlvnetgs----.-------.-----.--------.GWLHHLCMSGMDGFN-YPALRMQQQRYGS...--PYDY-TYILMLLEAFCAYLLYTPALP.IVGVLAVLHLVVLYLPIPL.....gN...sWlvv.....flyyVIRLV.PFT.SMLRMYIVIAFLWLCYKGFVHVRYGCNNVSCLMCYKKNVAKRIECSTVVNGVKRIFYVNANGGTY.FCTKHNWNCVSCDTYTVDSTFISRQVALDLSTQFKRPIIHTDEAYYEVTSVEVRNGYVYCY..FDSDG.E.RSYERFPMDAFTNVSKLHYSEL.......kGAAPSFNVLIFDATNRIEETAVKNAAIYYAQLACKPILLVDKRMVGVVGDDATIAKTMFEAYAQNYLLKYSINMEKVKH.LYTTALqqiasgmtveavlkvfvgstraeakDLES.DVD.......TNDVVSCIRLCHQEGWDWSTDSWNNLVPT.......YIKQ.-DTLSTLEVGQFMTASARYVNANVAKSAAVNLIWRYADFIKLSESVRRQLRVAARKTGLNLFVTTSSLK-a..
H9AA60_9BETC/2269-2757                 ....................................................................yt--LC.----DFY.DTASIgFKNQYCNG.SLACQLCVSGFDMLDNYKAIDVVQYEADR...RSVVDYTGMIKLIIELVVSYALYTVWFY.PLFGLICLQMLTTWLPEFFm...vsSl..hWflr.....ilvsVANLL.PAH.VFLRFYITVTFIFKIFSLFRHVIHGCNKAGCLFCYKRNRSVRVKCSTVVGGMIRYYDVMANGGTG.FCSKHQWNCINCGSYKPGNTFITVEAAAELSKELRRPVVPTDVAYHTVTDVKQVGCSMRLF..YDRDG.Q.RVYDDVNASLFVDYNNLLHSKV........KSVPNLHVVVVE--NDADKANFLNAAVFYAQSLFRPVLMVDKSLITTANTGTSVSQTMFDVYVDTLLSMFDVDRKSLTS.FINTAHssikegvqldkv.lntfiscarkscSIDS.DVD.......TKCVADSVMSAVAAGIELTDESYNNLVPT.......YIKS.-DNIVAADLGVLIQNSSKHVQGNVAKIAGVSCIWSVDAFNQLSSDFQHKLKKACCKTGLKLKLTYNKQ--ss.
R1AB_BC279/2243-2732                   ....................................................................ps--YC.DGVRESY.VNSSNvTTMDFCEG.SFLCSVCLNGLDSLDSYPALETIQVTISS...YK-LDL-TSLGLAAEWFLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
R1AB_CVMA5/2331-2823                   ...............................................................tfgvsti---C.----DFY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RLSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLIGMQLLTTWLPEFFm...leTm..hWsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLF..YERDG.Q.RVYDDVNASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSVMSAVNAGVDFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
R1AB_FIPV/1943-2395                    .....................................................................k-LAC.SGSVQAY.SNSSF.VKSEVCGN.SILCKACLASYDELADFDHLQVSWDYKSD...PLWNRVIQLSYFIF-----LAVFGNNYV.RCLLMYFVSQYLNLWLSYFg...yvKy..sW............FLHVV.NFE.SISVEFVIIVVVFKAVLALKHIFLPCNNPSCKTCSKIARQTRIPIQVVVNGSMKTVYVHANGTGK.LCKKHNFYCKNCDSYGFDHTFICDEIVRDLSNSIKQTVYATDRSYQEVTKVECTDGFYRFY..VGEEF.T.AYDYDVKHKKYSSQEVLKTMFL........----LDDFIVYN-PSGSSLASVRNVCVYFSQLIGRPIKIVNSELLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LEECYK.........................LCNL.DVT.......FSTFEMAINNAHRFGILITDRSFNNFWPS.......KIKPgSSGVSAMDIGKCMTFDAKIVNAKVLTQRGKSVVWLSQDFSTLSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
A0A0U1WHK4_SARS/2237-2726              ....................................................................ps--YC.SGVRESY.LNSSNvTTMDFCEG.SFPCSVCLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
V5TFR4_9GAMC/1739-2217                 .....................................................................g-YLC.-YDYNTY.SDYHF.NVFDYCN-.GTLCELCLSGVDSLHLYKHAKTTYQKVVT...------TDFVGYAPLYFILQAVFFKSAA.MLSGLLFMIKFTINFGVFN......T...gIyiv......dyvVSTIA.NTI.DPIMISTIVCGMIKLYRMANHYFYGCKNPACDRCHAANVSERTELSCVVGSKRFPYYVYANSVAK.MCSKHMWCCKNCDVFGEGNTFISTAIVGDLTDKIRRKVKATSEALAIATLVEEGDNYELHYklNGAEG.S.RVY---------DKNQFWNCAIpvsdaskcGKFEPDNFITYNASSQSELSLAKQCAVYYAQVLSRPTIIV--PLSQEEYTSGKVTRTQVTRLLDLCDDYYGISDAEVKM.SVIKSNtgatlsaav......qqyvakivpsQVMNlDV-.......-----DFLLFCDRYGLTPSQAAYNNAVPNstcnldaYEGEqFLRVKEQVKSAFVQFGVKYVDFKMALNDSKIAILQYDFLKSLPGNYLPSLLMRIRQAGVTLRVTTSQIMQ...
A3EXA2_BCHK4/2272-2768                 .....................................................................r-TLC.DGLVVEY.RNTSF.DVMEFCSNrSVLCQWCLIGQDSLTRYSALQMLQTHITS...YV-LNI-DWIWFALEFFLAYVLYTSSFN.VLLLVVTAQYFFAYTSAFV......N....WraynyivsglffLVTHI.PLH.GLVRVYNFLACLWFLRKFYSHVINGCKDTACLLCYKRNRLTRVEASTIVCGTKRTFYIAANGGTS.YCCKHNWNCVECDTAGVGNTFICTEVANDLTTTLRRLIKPTDQSHYYVDSVVVKDAVVELH..YNRDG.S.SCYERYPLCYFTNLEKLKFKEVck....tpTGIPEHNFLIYDTNDRGQENLARSACVYYSQVLCKPMLLVDVNLVTTVGDSREIAIKMLDSFINSFISLFSVSRDKLEK.LINTARdcvrrgddfqnv.lktftdaarghaGVES.DVE.......TTMVVDALQYAHKNDIQLTTECYNNYVPG.......YIKP.-DSINTLDLGCLIDLKAASVNQTSMRNANGACVWNSGDYMKLSDSFKRQIRIACRKCNIPFRLTTSKLR-a..
R9QTB2_SARS/2229-2718                  ....................................................................ps--YC.DGVRESY.LNSSNvTIIDFCEG.SFPCSVCLNGLDSLDFYPALETIQVTISS...YK-LDL-TFLGLAAEWFLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fvisIVQMA.PVS.AMVRMYIFFASFYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLY..FDKAG.Q.RTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNISLIWNVKDYMSLSEQLRKQIRSAARKNNIPFRLTCATTR-q..
C0KYZ6_9BETC/2273-2826                 fknalqtfnwsvvsrgfflvatvfllwfnflyanvilsdfylpnigplpmfvgqivawvkttfgvlticd----.-----FY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RVSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLVGMQLLTTWLPEFFml.gtmH....Wsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLF..YERDG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLSVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfvgcarrkcAIDS.DVE.......TKSITKSVMAAVNAGVEVTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQE-a..
H9BR07_9NIDO/1535-1970                 .....................................................................g-WPCvYNTTTHY.DYNAF.-----CAG.DLICLTCFNGQDSLHLYQHLRVNQQPIAA...---TDYTLYALAFILLLANASLVVAALA.FAFIVNMYGVEIPYFGILH......-....-............----I.DYQ.SFLVVAFVVYYVYKVCSFLRHLARGCKSPTCTLCSKVRTSPTITVETIVQGRKYPSVIETNGGFS.VCKEHNFYCKNCTAERPG-TFIPTEAVESLSRATKLSVKPTAPAFLLARDVECQTDVV---..VARAM.H.NQTAHVCISKYSDIRTVDQLLKpt....plFSYTPDVMIAADFDNSGSLKTARELAVVLSMDLKRTIIIIDQAYSKPVNTYDEVASRMEKYFTL-------------QK.INPSG-.........................DVFS.DIKqatagqaTDSAINAAILAVQRGLDFTVDNPNNILPH.......YAFD.FTTLTADDQATIIETGCA---KGNLKGTGVGVILSANLVTRLSQSAIRIIANAASRNGVTCAVTPSTLVM...
K4K1U5_9ALPC/2053-2505                 .....................................................................d-TVC.TSYVEGY.SKSNF.DKNAFCE-.NLACKTCLYGYEELSDFPHTVTTWTHLGD...PLFKTLLPLVYIAF-----LLIFGGVVV.RGFMLYFVAQYVNQFGVVLg...fqDs..vW............ALQLV.PFS.IFGDEIVVLFLVIKFMLFLKHVFFGCEKPSCVACSKSARLTRIPMQTIVNGANRSFYVVANGGKN.FCEKHKFFCVNCDSYGQGNTFINDVVAVEVSNVVKTNVIATSPAVVDITKVEFHNGFYYLYgdDGKTF.W.RYNFDITEGKYSCKEALKNCNV........----LADFIVYN-NVGSNLAQVKNACVYFSQLLCKPIKLVDATLLATL--NVDFNGALHAAFVEVLNESFGKDLKSCAT.MADCKT.........................ALDI.DAE.......DEEFVSGVSNAHRYNTLLSDLSYNNFVTS.......YAKP.EEKLSTHDLAACMRGGAKVVNHNILVKENVPIVWYARDFNMLSEEGRRYVVKTAKLKGVNFLLTFNDNRM...
R1A_SARS/2237-2726                     ....................................................................ps--YC.NGVRELY.LNSSNvTTMDFCEG.SFPCSICLSGLDSLDSYPALETIQVTISS...YK-LDL-TILGLAAEWVLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYIWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKTHNWNCLNCDTFCTGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESASKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
R1A_CVMJH/2273-2826                    fknalqtfnwsvvsrgfflvatvfllwfnflyanvilsdfylpnigplpmfvgqivawvkttfgvlticd----.-----FY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYESINVVQHVVDR...RVSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLVGMQLLTTWLPEFFml.gtmH....Wsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVIEVKQVGCSMRLF..YERDG.Q.RVYDDVSASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLNAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVYSLLRHLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfvgcarrkcAIDS.DVE.......TKSITKSVMAAVNAGVEVTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQSNVAKAANVACIWSVDAFNQLSADLQHRLRKACVKTGLKIKLTYNKQE-a..
A0A0U1WHG0_SARS/2232-2721              ....................................................................ss--YC.GGVRDLY.INSSNvTIMDFCEG.SFPCSVCLSGLDSLDSYPALETIQVTISS...YK-LDL-TFLGLAAEWFLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFASFYYTWRSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGRSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYIDTFSTTFSVPMEKLKA.LVATAHselakgvsldg..vlstfvsaarqgVVDT.DVD.......TKDVMECLKLSHNSDLEVTSDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVALVWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
A0A0F6WGL5_9GAMC/1806-2277             .....................................................................g-SFC.-SPYADY.GKESF.DVLRYCGS.DFTRRVRLHGKDSPHLYKHAYSVAQFYKD...A--VNGISFTWNWLYMLFLLLFVKPVAG.FVIICYCIRYLVLSTTVLQtgvgflD....W............FIQTV.FANfNFMGAGFYFWLFYKVYIQVHHIMY-CKDITCEVCKRVARSNRHEVSVVVNGRKQLVHVYTNSGYS.FCKRHNWYCRNCDKYGHQNTFMSPEVAGELSEKLKRHVKPTAFAYHVVDDACLVDDFVNLK..YNAATpG.KEGVHSAVKCFSVSDFLKKAVFlkd.aqkcEQISNDSFIVCNTHSAHALEEAKNAAIYYAQCLCKPILILDQVLYDTL-ACEPVSKSLVDKVCGVLAGILDVDNYCFSG.KLNYKAgs.....................lrDALL.SVT......aGEEAVDMAMFCHNYDLSYTSDGFTNVVPS.......YGFD.LGKLTPRDKGFLINADACIANLKV--RNAPPVVWNYHDLIKLSDNCLKFLVSGVIKSGAKFYVTRSDVK-q..
R1A_IBVB/1782-2249                     .....................................................................g-SLC.-GPYKDY.GKDSF.DVLRYCAD.DFICRVCLHDKDSLHLYKHAYSVEQVYKDaasGFIFNW-NWLYLVF-----LILFVKPVAgFVIICYCVKYLVLNSTVLQtgvcflD....W............FVQTVfSHF.NFMGAGFYFWLFYKIYIQVHHILY-CKDVTCEVCKRVARSNRQEVSVVVGGRKQIVHVYTNSGYN.FCKRHNWYCRNCDDYGHQNTFMSPEVAGELSEKLKRHVKPTAYAYHVVDEACLVDDFVNLK..YKAAT.PgKDSASSAVKCFSVTDFLKKAVFlke.alkcEQISNDGFIVCNTQSAHALEEAKNAAIYYAQYLCKPILILDQALYEQL-VVEPVSKSVIDKVCSILSSIISVDTAALNY.KAGTLR.........................DALL.SIT......kDEEAVDMAIFCHNHDVDYTGDGFTNVIPS.......YGID.TGKLTPRDRGFLINADASIAN--LRVKNAPPVVWKFSELIKLSDSCLKYLISATVKSGVRFFITKSG---akq
T2B9U0_MERS/2227-2723                  .....................................................................s-SAC.DGLASAY.RANSF.DVPTFCANrSAMCNWCLISQDSITHYPALKMVQTHLSH...YV-LNI-DWLWFAFETGLAYMLYTSAFN.WLLLAGTLHYFFAQTSIFV......D....WrsynyavssafwLFTHI.PMA.GLVRMYNLLACLWLLRKFYQHVINGCKDTACLLCYKRNRLTRVEASTVVCGGKRTFYITANGGIS.FCRRHNWNCVDCDTAGVGNTFICEEVANDLTTALRRPINATDRSHYYVDSVTVKETVVQFN..YRRDG.Q.PFYERFPLCAFTNLDKLKFKEVck....ttTGIPEYNFIIYDSSDRGQESLARSACVYYSQVLCKSILLVDSSLITSVGDSSEIATKMFDSFVNSFVSLYNVTRDKLEK.LISTARdgvrrgdnfhsv.lttfidaargpaGVES.DVE.......TNEIVDSVQYAHKHDIQITNESYNNYVPS.......YVKP.-DSVSTSDLGSLIDCNAASVNQIVLRNSNGACIWNAAAYMKLSDALKRQIRIACRKCNLAFRLTTSKLR-a..
R1A_BCHK5/2318-2814                    .....................................................................h-SLC.DGMVEAY.RNVSY.DVNDFCSNrSALCNWCLIGQDSLTRYSAFQMIQTHVTS...YV-INI-DWVWFVMEFALAYVLYTSTFN.VLLLVVSSQYFFSYTGAFV......N....WrsynylvsgyffCVTHI.PLL.GLVRIYNFLACLWFLRRFYNHVINGCKDTACLLCYKRNRLTRVEASTVVCGSKRTFYIVANGGTS.FCCRHNWNCVDCDTAGIGNTFICEEVANDLTTSLRRLVKPTDKSHYYVESVTVKDSVVQLH..YSREG.A.SCYERYPLCYFTNLDKLKFKEVck....tpTGIPEHNFLIYDSSDRGQENLARSACVYYSQVLSKPMLLVDSNMVTTVGDSREIASKMLDSYVNSFISLFGVNRDKLDK.LVATARdcvkrgddfqtv.iktftdaargpaGVES.DVE.......TSSIVDALQYAYKHDLQLTTEGFNNYVPS.......YIKP.-DSVATADLGCLIDLNAASVNQTSIRNANGACIWNSSDYMKLSDSLKRQIRIACRKCNIPFRLTTSRLR-s..
A0A0P0ILY9_CVH22/2023-2474             .....................................................................n-YFC.DATVSGY.AKSNF.VKDDYCGN.SLGCKMCLFGYQELNQFHHLAVVWKHITD...PLFSTMQPFIVMVL-----LLIFGDNYL.RCFLLYFVAQMISNVGVFLgy.ketN....W............FLHFI.PFD.AICDELLVTIIVIKVIAFIRHVIFGCDKPGCIACSKSARLKRFPVSTIVNGVQRSFYVNANGGSK.FCKKHNFFCVDCDSYGYGNTFITQEVSRELGNITKTNVQPTGPSYIMIDKVEFENGFYRLH..AGETF.W.RYNFDITESKYSCKEVLKNCNA........----LDDFIVFN-NSGTNVTQVKNASVYFSQLLCRPIKLVDSELLATL--SVDFNGVLHRAYIDVLRNSFGKDLNANMS.LADCKS.........................VLGL.SVS.......DHEFTNAISNAHRCDVLLSDLSFNNFVSS.......YAKP.EEKLSSYDLACCMRAGAKTVNANVLTKDQTPIVWHARDFNSLSAEGRKYIVKTSKAKGLTFLLTLNENQ-a..
R1AB_CVH22/2019-2469                   .....................................................................n--FC.SETVNGY.AKSNF.VKDDYCDG.SLGCKMCLFGYQELSQFSHLDVVWKHITD...PLFSNMQPFIVMVL-----LLIFGDNYL.RCFLLYFVAQMISTVGVFLgy.ketN....W............FLHFI.PFD.VICDELLVTVIVIKVISFVRHVLFGCENPDCIACSKSARLKRFPVNTIVNGVQRSFYVNANGGSK.FCKKHRFFCVDCDSYGYGSTFITPEVSRELGNITKTNVQPTGPAYVMIDKVEFENGFYRLY..SCETF.W.RYNFDITESKYSCKEVFKNCNV........----LDDFIVFN-NNGTNVTQVKNASVYFSQLLCRPIKLVDSELLSTL--SVDFNGVLHKAYIDVLRNSFGKDLNANMS.LAECKR.........................ALGL.SIS.......DHEFTSAISNAHRCDVLLSDLSFNNFVSS.......YAKP.EEKLSAYDLACCMRAGAKVVNANVLTKDQTPIVWHAKDFNSLSAEGRKYIVKTSKAKGLTFLLTINENQ-a..
B1PHI7_9ALPC/2264-2714                 .....................................................................e-YFC.KEHVEGY.GNSTF.VKDEYCA-.STMCKVCLFGYQELADLPHTKVVWKYVGF...PIFVNWLPFLYLAF-----LFIFGGIFV.KGLVCYFLAQYVNNFGVYFg...mqEt..fW............PLQVI.PFN.VFGDEIVVTFLVYKALMFIKHVCFGCDKPSCVACSKSARLTRVPMQTIVNGANKSFYVVANGGSS.YCHKHKFFCLNCDSYGPGNTFINETVARELSNVVKTNVQPTGDSFIEVDKVSFENGFYYLY..SGETF.W.RYNFDVTDAKYGCKEVLKNCNV........----LADFIVYN-NTGSNVSQIRNACVYFSQMLCKPIKLVDATLLSTL--NVDFNGALHSAFIQVLNDSFSKDLSSCAS.MTECKQ.........................ALGF.DVS.......DEEFVNAVSNAHRFNVLLSDNSFNNLLTS.......YAKP.EEQLSTHDVATCMRFNAKVVNHNVLIKENVPIVWLARDFQQLSEEGRKYLVKTTKAKGVTFLLTFNSNAM...
R1A_BC279/2243-2732                    ....................................................................ps--YC.DGVRESY.VNSSNvTTMDFCEG.SFLCSVCLNGLDSLDSYPALETIQVTISS...YK-LDL-TSLGLAAEWFLAYMLFTKFFY.LLGLSAIMQVFFGYFASHFi....sN...sWlmw.....fiisIVQMA.PVS.AMVRMYIFFAFCYYVWKSYVHIMDGCTSSTCMMCYKRNRATRVECTTIVNGMKRSFYVYANGGRG.FCKAHNWNCLNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYVVDSVAVKNGALHLY..FDKAG.Q.KTYERHPLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCDESAAKSASVYYSQLMCQPILLLDQALVSDVGDSTEVSVKMFDAYVDTFSATFSVPMEKLKA.LVATAHselakgvaldg..vlstfvsaarqgVVDT.DVD.......TKDVIECLKLSHHSDLEVTGDSCNNFMLT.......YNKV.-ENMTPRDLGACIDCNARHINAQVAKSHNVSLIWNVKDYMSLSEQLRKQIRSAAKKNNIPFRLTCATTR-q..
R1AB_SARS2/2260-2749                   ....................................................................ps--YC.TGYREGY.LNSTNvTIATYCTG.SIPCSVCLSGLDSLDTYPSLETIQITISS...FK-WDL-TAFGLVAEWFLAYILFTRFFY.VLGLAAIMQLFFSYFAVHFi....sN...sWlmw.....liinLVQMA.PIS.AMVRMYIFFASFYYVWKSYVHVVDGCNSSTCMMCYKRNRATRVECTTIVNGVRRSFYVYANGGKG.FCKLHNWNCVNCDTFCAGSTFISDEVARDLSLQFKRPINPTDQSSYIVDSVTVKNGSIHLY..FDKAG.Q.KTYERHSLSHFVNLDNLRANNT........KGSLPINVIVFDGKSKCEESSAKSASVYYSQLMCQPILLLDQALVSDVGDSAEVAVKMFDAYVNTFSSTFNVPMEKLKT.LVATAEaelaknvsldn..vlstfisaarqgFVDS.DVE.......TKDVVECLKLSHQSDIEVTGDSCNNYMLT.......YNKV.-ENMTPRDLGACIDCSARHINAQVAKSHNIALIWNVKDFMSLSEQLRKQIRSAAKKNNLPFKLTCATTR-q..
Q9J3E9_9BETC/2332-2820                 ...................................................................sti---C.----DFY.QVTDLgYRSSFCNG.SMVCELCFSGFDMLDNYDAINVVQHVVDR...RLSFDYISLFKLVVELVIGYSLYTVCFY.PLFVLIGMQLLTTWLPEFFm...leTm..hWsar.....lfvfVANML.PAF.TLLRFYIVVTAMYKVYCLCRHVMYGCSKPGCLFCYKRNRSVRVKCSTVVGGSLRYYDVMANGGTG.FCTKHQWNCLNCNSWKPGNTFITHEAAADLSKELKRPVNPTDSAYYSVTEVKQVGCSMRLF..YERDG.Q.RVYDDVNASLFVDMNGLLHSKV........KGVPETHVVVVE--NEADKAGFLGAAVFYAQSLYRPMLMVEKKLITTANTGLSVSRTMFDLYVDSLLNVLDVDRKSLTS.FVNAAHnslkegvqleqv.mdtfigcarrkcAIDS.DVE.......TKSITKSVMSAVNAGVDFTDESCNNLVPT.......YVKS.-DTIVAADLGVLIQNNAKHVQANVAKAANVACIWSVDAFNQLSADLQHRLRKACSKTGLKIKLTYNKQE-a..
R1A_CVPPU/1918-2370                    .....................................................................k-LTC.NGAVQAY.KNSSF.IKSAVCGN.SILCKACLASYDELADFQHLQVTWDFKSD...PLWNRLVQLSYFAF-----LAVFGNNYV.RCFLMYFVSQYLNLWLSYFg...yvEy..sW............FLHVV.NFE.SISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGK.FCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFY..VGDEF.T.SYDYDVKHKKYSSQEVLKSMLL........----LDDFIVYS-PSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDL--SVDFKGALFNAKKNVIKNSFNVDVSECKN.LDECYR.........................ACNL.NVS.......FSTFEMAVNNAHRFGILITDRSFNNFWPS.......KVKPgSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNA---vgs
#=GC seq_cons                          .....................................................................s..hC.pshhptY.tsooh.spscaCss.ShhCphCLtGhDpLssYstlpsltpplss....h.hsh.shhhhsh.hhh.hhlasssah.hlhlhhhhphahshhssahh.....s....W............hlphl.Php.shschalllshha+lhphh+HVhaGCspsuChhChKpsRtsRVpsoTlVsGsp+oaYVhANGGss.FCpKHNa.ClNCDoassGsTFIscElApDLSpphK+sVpPTDtuah.VccVphpsuhhpLa..hscss.p.+hhtchshspFssh-sL+pspl........tt...pshIVa-.sstushuts+sAsVYaSQlLC+PIllVDpsLlosl.sus-lsssha-ualsshtssFsVshpphps.lsssuc.........................slss.DVc.......scshhsulp.AH+tslplTs-ShNNhlso.......YsKs..-slostDLGshlcssA+hVNtsVhpppslullWssp-ahpLSpphp+hlhpus++sGlsFpLThsspt....
//
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