GenomeNet

Database: Pfam
Entry: CoV_NSP4_N
LinkDB: CoV_NSP4_N
Original site: CoV_NSP4_N 
#=GF ID   CoV_NSP4_N
#=GF AC   PF19217.2
#=GF DE   Coronavirus replicase NSP4, N-terminal
#=GF PI   Corona_NSP4_N;
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Manual
#=GF GA   25.00 25.00;
#=GF TC   250.20 250.20;
#=GF NC   20.30 19.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   29162711
#=GF RT   Expression and Cleavage of Middle East Respiratory Syndrome
#=GF RT   Coronavirus nsp3-4 Polyprotein Induce the Formation of
#=GF RT   Double-Membrane Vesicles That Mimic Those Associated with
#=GF RT   Coronaviral RNA Replication.
#=GF RA   Oudshoorn D, Rijs K, Limpens RWAL, Groen K, Koster AJ, Snijder
#=GF RA   EJ, Kikkert M, Barcena M;
#=GF RL   mBio. 2017; [Epub ahead of print]
#=GF DR   INTERPRO; IPR043612;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This is the N-terminal domain of the coronavirus nonstructural
#=GF CC   protein 4 (NSP4). NSP4 is encoded by ORF1a/1ab and
#=GF CC   proteolytically released from the pp1a/1ab polyprotein. NSP4 is
#=GF CC   a membrane-spanning protein which is thought to anchor the viral
#=GF CC   replication-transcription complex to modified endoplasmic
#=GF CC   reticulum membranes. This N-terminal region represents the
#=GF CC   membrane spanning region, covering four transmembrane regions
#=GF CC   [1].
#=GF SQ   111
#=GS R1AB_CVMA5/2859-3215        AC P0C6X9.1
#=GS A0A0A7UXR0_9BETC/2819-3175  AC A0A0A7UXR0.1
#=GS H9BZX6_9BETC/2860-3216      AC H9BZX6.1
#=GS A0A0U1UZA8_9ALPC/2688-3028  AC A0A0U1UZA8.1
#=GS R1AB_SARS/2720-3119         AC P0C6X7.1
#=GS A8JNZ1_9ALPC/2483-2823      AC A8JNZ1.1
#=GS E0XIZ2_9BETC/2756-3110      AC E0XIZ2.1
#=GS R1A_BC512/2554-2894         AC P0C6F6.1
#=GS B8Q8S4_SARS/2720-3119       AC B8Q8S4.1
#=GS B1PHJ3_9ALPC/2689-3029      AC B1PHJ3.1
#=GS R1AB_BC279/2771-3125        AC P0C6V9.1
#=GS A0A0U1UZ65_BCHK4/2824-3178  AC A0A0U1UZ65.1
#=GS A0A240FW17_9ALPC/2106-2447  AC A0A240FW17.1
#=GS R1A_BC279/2771-3125         AC P0C6F5.1
#=GS B1PHK1_9ALPC/2652-2992      AC B1PHK1.1
#=GS R1AB_CVPPU/2413-2760        AC P0C6Y5.1
#=GS A0A1B3Q5W8_9BETC/2678-3028  AC A0A1B3Q5W8.1
#=GS A0A0U1WHG4_9ALPC/2499-2838  AC A0A0U1WHG4.1
#=GS R1AB_CVMJH/2862-3218        AC P0C6Y0.1
#=GS R1A_IBVB/2299-2657          AC P0C6V3.1
#=GS T2B9U0_MERS/2771-3126       AC T2B9U0.1
#=GS B1PHI6_9ALPC/2745-3085      AC B1PHI6.1
#=GS B1PHI7_9ALPC/2745-3085      AC B1PHI7.1
#=GS A0A0U1WHG0_SARS/2760-3114   AC A0A0U1WHG0.1
#=GS B2BW32_9GAMC/2274-2636      AC B2BW32.1
#=GS B8Q8U6_SARS/2720-3119       AC B8Q8U6.1
#=GS R1AB_BCHK9/2634-2984        AC P0C6W5.1
#=GS C0KYZ6_9BETC/2862-3218      AC C0KYZ6.1
#=GS Q06BE1_9BETC/2772-3128      AC Q06BE1.2
#=GS F2YDB2_SARS/2763-3119       AC F2YDB2.1
#=GS B1PHJ4_9ALPC/2689-3029      AC B1PHJ4.1
#=GS R1A_CVHOC/2772-3128         AC P0C6U7.1
#=GS E0ZN59_BCHK9/2609-2959      AC E0ZN59.1
#=GS V5TFR4_9GAMC/2274-2636      AC V5TFR4.1
#=GS A0A125R5A4_9ALPC/2425-2772  AC A0A125R5A4.1
#=GS R9QTB2_SARS/2757-3111       AC R9QTB2.1
#=GS A0A0K2RW65_9BETC/2807-3163  AC A0A0K2RW65.1
#=GS K4K1U5_9ALPC/2538-2879      AC K4K1U5.1
#=GS A0A0P0LKV0_CVH22/2513-2852  AC A0A0P0LKV0.1
#=GS Q0ZJB1_CVHK1/2859-3215      AC Q0ZJB1.1
#=GS A3EXC0_BCHK4/2826-3180      AC A3EXC0.1
#=GS H9BQZ9_9NIDO/2033-2402      AC H9BQZ9.1
#=GS T2B9I2_MERS/2771-3126       AC T2B9I2.1
#=GS R1AB_FIPV/2438-2785         AC Q98VG9.2
#=GS R1AB_SARS2/2788-3142        AC P0DTD1.1
#=GS A0A0U2UMS4_9ALPC/2411-2758  AC A0A0U2UMS4.1
#=GS A0A0K1YZY7_SARS/2727-3119   AC A0A0K1YZY7.1
#=GS A0A125R5A3_9ALPC/2425-2772  AC A0A125R5A3.1
#=GS A0A1X9JQL5_9ALPC/2382-2733  AC A0A1X9JQL5.1
#=GS R1A_CVMA5/2859-3215         AC P0C6V0.1
#=GS R1A_BCHK5/2862-3217         AC P0C6T5.1
#=GS E0ZN51_BCHK9/2629-2979      AC E0ZN51.1
#=GS R1A_SARS/2763-3119          AC P0C6U8.1
#=GS A0A023YA54_MERS/2872-3227   AC A0A023YA54.1
#=GS R1AB_BCHK4/2816-3170        AC P0C6W3.1
#=GS A0A0U1UZ20_9ALPC/2652-2992  AC A0A0U1UZ20.1
#=GS A0A0U1WHK4_SARS/2721-3119   AC A0A0U1WHK4.1
#=GS S5Z1D1_9ALPC/2583-2923      AC S5Z1D1.1
#=GS H9BZX5_9BETC/2860-3216      AC H9BZX5.1
#=GS R1A_SARS2/2788-3142         AC P0DTC1.1
#=GS R1AB_BCHK5/2862-3217        AC P0C6W4.1
#=GS R1A_CVH22/2507-2847         AC P0C6U2.1
#=GS D9J203_9ALPC/2396-2748      AC D9J203.1
#=GS A3EXA2_BCHK4/2816-3170      AC A3EXA2.1
#=GS H9BR24_9NIDO/1988-2349      AC H9BR24.1
#=GS S5YAF0_9ALPC/2583-2923      AC S5YAF0.1
#=GS B6VDX7_THCOV/2000-2371      AC B6VDX7.1
#=GS A0A0K2RVJ3_9BETC/2807-3163  AC A0A0K2RVJ3.1
#=GS Q0PL14_9ALPC/2410-2757      AC Q0PL14.1
#=GS Q6UZF5_SARS/2720-3119       AC Q6UZF5.1
#=GS R1A_CVMJH/2862-3218         AC P0C6V1.1
#=GS B8Q8S5_SARS/2763-3119       AC B8Q8S5.1
#=GS A0A0F6SKM6_9GAMC/2329-2686  AC A0A0F6SKM6.1
#=GS A3EXI9_BCHK9/2629-2979      AC A3EXI9.1
#=GS A0A0F6WGL5_9GAMC/2329-2686  AC A0A0F6WGL5.1
#=GS R1A_BCHK4/2816-3170         AC P0C6T4.1
#=GS R1AB_BC512/2554-2894        AC P0C6W0.1
#=GS H9TEX0_9ALPC/2414-2761      AC H9TEX0.1
#=GS F2YDB1_SARS/2720-3119       AC F2YDB1.1
#=GS R1A_CVM2/2805-3161          AC P0C6U9.1
#=GS R1AB_IBVB/2299-2657         AC P0C6Y1.1
#=GS A0A0P0ILY9_CVH22/2513-2852  AC A0A0P0ILY9.1
#=GS B7U2M9_9BETC/2772-3128      AC B7U2M9.1
#=GS R1A_BCHK9/2634-2984         AC P0C6T6.1
#=GS B2BW31_9GAMC/2274-2636      AC B2BW31.1
#=GS B1PHK0_9ALPC/2652-2992      AC B1PHK0.1
#=GS H9BR34_9NIDO/1926-2295      AC H9BR34.1
#=GS U5LR11_9BETC/2834-3189      AC U5LR11.1
#=GS B8Q8U7_SARS/2763-3119       AC B8Q8U7.1
#=GS A0A0K1Z0N1_SARS/2762-3119   AC A0A0K1Z0N1.1
#=GS H9AA60_9BETC/2793-3149      AC H9AA60.1
#=GS Q9J3E9_9BETC/2856-3212      AC Q9J3E9.1
#=GS H9BR16_9NIDO/2000-2375      AC H9BR16.1
#=GS R1AB_CVHOC/2772-3128        AC P0C6X6.1
#=GS A3EXE7_BCHK5/2861-3216      AC A3EXE7.1
#=GS A0A0U1WHD1_9ALPC/2645-2985  AC A0A0U1WHD1.1
#=GS A8JNZ0_9ALPC/2483-2823      AC A8JNZ0.1
#=GS U5KNA9_9BETC/2834-3189      AC U5KNA9.1
#=GS A0A0K1RLM9_9ALPC/2409-2756  AC A0A0K1RLM9.1
#=GS H9TEW9_9ALPC/2414-2761      AC H9TEW9.1
#=GS D9J202_9ALPC/2396-2748      AC D9J202.1
#=GS A0A140ESF0_9NIDO/2023-2392  AC A0A140ESF0.1
#=GS H9BR07_9NIDO/2011-2380      AC H9BR07.1
#=GS A0A0U1UZC3_9ALPC/2413-2752  AC A0A0U1UZC3.1
#=GS A0A088DIE1_9BETC/2927-3283  AC A0A088DIE1.1
#=GS R1A_CVPPU/2413-2760         AC P0C6V2.1
#=GS R1AB_CVM2/2805-3161         AC P0C6X8.1
#=GS A0A0U1WHG1_9ALPC/2358-2697  AC A0A0U1WHG1.1
#=GS A0A096XNJ3_9ALPC/2485-2837  AC A0A096XNJ3.2
#=GS A0A059VJE6_9ALPC/2539-2879  AC A0A059VJE6.1
#=GS R1AB_CVH22/2507-2847        AC P0C6X1.1
R1AB_CVMA5/2859-3215                   ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlaY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............NASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
A0A0A7UXR0_9BETC/2819-3175             ..............................................WLFMPSYSVHK.SAYELP.AYASFKVIDNGVVRDVDVKDVCFANKYAQFDQWYEST.FG.lSyYSNHHSCPVVVAVID....KD.IGST..VFNVPTKVLRF..GYHVLHF.....................ITYA..F...SADGV...QCYTPHEQISYSDFYSS....GCVLSSACTMFASDNGASQAYCYT.EGLVQ...............NASLYSSLRPHVRYSLAN.tH.GY..IRF..PEVLREG.LVRVIRTKAMTYCRVGLCESAEEGICFTFNGSWAL.NNEYYrkMPGTFCGRDFVDIFNQFVVGLAQPIDFFSLTMSSVVGAVLAIIIVLIFYYLIKLKRAFGDYTAVVVVNVIVWFINFVMLFVFQVYPTFAVIYALCYFYVTLYFPSEISVIMHLQWLVMYGTIMPIWFCI..
H9BZX6_9BETC/2860-3216                 ..............................................WAFMPTYAVHK.SDMQLS.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlaY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTIVAHADGTPQPYCYT.EGVMH...............NASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
A0A0U1UZA8_9ALPC/2688-3028             .................................tfffcvgisegli-----------.--ATSL.EGFGFKYIKDGVMHDFDKPLSCVHNVFDNFNSWHEAR.FG..SiPSNSLKCPIVVGTLD....DV.--RN..VPGVPSGILLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTN-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............GSKRYSDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLFSFVKNLFNTFTMSLSVMALSGQVIFNCAVAALAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNMAPWFIIV..
R1AB_SARS/2720-3119                    tcattrqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A8JNZ1_9ALPC/2483-2823                 ...................................lfvllncvgft-----------.EYASSL.PGYDFKYIEDGQLKPFVNGLYCVRNTFDTFMDWHAQK.FG.fK.PSNSDKCPIVVGASD....--.SGRV..VPGVASDVYLL..GKTLIFT.....................LKTV..F...GSAGH...-CYDVNGIAD-----GD....KCLFNSACTNLEGLGGTR-TYCYK.TGLIE...............GAMTYGDLQHDSYYRLSG..D.NY..VRL..PYVVVQGlGFRAVRTQATTYCRVGECVDSKAGMCFGADRWMVY.SNDIG..-SDFICGSSLVDLLRNILSVFNYNFSTMIMSGQVIFNCVLACVVVFGCYFVMKFRRVFGDMSLAVFTVCAAVVVNNLSYFVSL-NYVGMVVYSFLYFISTRGL--KYCFIWDVSYVVAYCLLAPWWLL-t.
E0XIZ2_9BETC/2756-3110                 .............................................y-FITPTHTLMG.HDVFSS.EIIGYKAIHNGVTRDVLTTDDCFANKHTGFDHWFSQR.GG..S.YRNDKTCPVIAAVIT....RE.VGFI..VPGLPGTVRRA.sNGDFLHF.....................LPRV..F...SAVGN...ICYTPAKLIEYTDFATS....ACVLAAECTIFKDAQGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PSTYLEG.SVRVVTTFDSEYCRHGTCERSDAGVCLSTNGRWVL.NNDYYrsIPGVFCGADASDLLFNIFTPLVRPVGTLDISASVVAGGLIAILVTCVAYYFMKFRRAFGEYNHVVFANALLFLLSFTILCLTPAYTFLPGIYSLLYLYLTFYFTNDVSFLAHLQWLAMFSPIVPFWIT-v.
R1A_BC512/2554-2894                    .........................................lfvat---SLLDFSAQ.--VTSD.TQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAK.FG..SiPTNSRRCPIVVGTSD....EV.--RY..IPGVPAGVFLY..-GKSLIF.....................AMST..I...FGTSG...LCFDDRGLTD-----PD....SCIFNSACTTLSGIGGR-NVYCYR.EGVVD...............NAKLYSSLLPHSYYRLMD..G.NH..IVL..PEIITRGfGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVY.SKTPG..-SDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-NSIGMLAYATLYFLCTKGV--RYSWVWHVGFAISYCFLAPWWVV-l.
B8Q8S4_SARS/2720-3119                  tcattrqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
B1PHJ3_9ALPC/2689-3029                 .................................tfffcvgisegli-----------.--ATSL.EGFGFKYIKDGVMHDFDKPLSCVHNVFDNFNSWHEAR.FG..SiPSNSLKCPIVVGTLD....DV.--RN..VPGVPSGILLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTN-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............GSKRYSDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLFSFVKNLFNTFTMSVSVMALSGQVIFNCAVAALAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV..
R1AB_BC279/2771-3125                   .............................................y-IIMPVHSLSV.HDGYTN.EIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQR.GG..S.YRNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A0U1UZ65_BCHK4/2824-3178             ..............................................WFCLPSYSIAT.VNFNDD.RILTYKVIENGIVRDIAPNDACFANKYGHFSKWFNEN.HG.gV.YRNSVDCPITIAVIA....GV.AGAR..VANVPANLAWV..GRQIVLF.....................VSRV..F...AN-TN...VCFTPTNEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............GASSYADMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAVSLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGTVVPIWML-a.
A0A240FW17_9ALPC/2106-2447             ....................................slmlgfsywn-------VN--.-SLSDF.NVVGFKYIENGRLKNFEGPVSCLYNNFINFDNWHYTK.FN..AgFKNDKNCPIVVGTFE....-D.-GKV..IPNVPANVKLV..GNLLYFG.....................LNSV..F...QSQDN...LCFDQFGLT-------E....NCVFNSACLKLTGIVGER-VYCYS.KGLVN...............DSLLYADILPHLAYQTVD..G.AL..LRL..PKLIFSIlGLKFVQLKDLLYCKMGECVNSQLGYCLGAESFMVY.NKEYN.kDKYVFCGEGFLGFIRNFYTTFNTNVFSLFLTTQVMINFLVMLIVLFGFWLAMRIRRMFGDFTMSVCYIVVATMVNSLSYLVTG-NSIGLLVYGLVYFFVTLRL--NYTYIWHMCFIIAYLTIAPMWTI-f.
R1A_BC279/2771-3125                    .............................................y-IIMPVHSLSV.HDGYTN.EIIGYKAIQDGVTRDIMATDDCFANKHAGFDSWFSQR.GG..S.YRNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGVCLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSIFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
B1PHK1_9ALPC/2652-2992                 .................................fflllnasefgyv-----------.--ATSF.EDFGFKYIEHGVLKDFDGPLSCVHNVFDNFNAWHEAR.YG..VvPINRRICPIVVGTID....N-.-IRF..VPNVPSGIVLI..GKTLVFA.....................VKAV..F...TETGN...-CFNLNGLTT-----LG....SCIFNSACTNMDGLGGPA-TYCYK.EGLFE...............NSKLYSDLVPHSHYKLED..G.NF..IKL..PETLARGlGFVTIKTMETTYCRVGECLDSKAGVCFGLDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLSIFTSSFSVMALSGQVMFNCIVAAIAVVVCFLVIKFKRMFGDLSMGVCTVVAVVLINNVSYIITQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHIGYVVAYFTLAPWFLV-a.
R1AB_CVPPU/2413-2760                   ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFITRKL--AYPGILDAGFIIAYINMAPWYVI-t.
A0A1B3Q5W8_9BETC/2678-3028             ............................................qw--FTPWYTMTA.---VPY.DVIDFKVIDNAILRDIVPTDTCFANKFETFDNWYHNR.FG..T.YENNWRCPMVVGVVK....EL.VGVL..KPDLPVRFVRV..GTTLLPV.....................VNFG..M...SGADS...VCYTPYSAISYSDFETS....ACVLAATCTLFTGVGGQPAPYCAD.PTLIP...............NATHYGMLKPHVLYPFYE.tA.GY..IRF..PEVID-A.GVHIVKLMAMEYCKVGRCDVSEAGVCVTLTPMWVV.NNPTFrqLPGVYCGASFMDMILQVFTPMFTPVGAVDITGSIIMGACLAVAISMVLYYLLKFRRAFGDYSSVVLVNILAFVVNVLVLCLEGAYPMLPSIYALLFLYVTCYFSSDVAAIMHVSFLVMFTSVIPLWVTM..
A0A0U1WHG4_9ALPC/2499-2838             ......................................ffaiglld-------FSTT.--VTSA.SEYDFKYIIGGKLQSFEKPLDCVHNVFDNFNTWFQAK.FG..FvPRNSRSCPIVVGVND....--.EARV..IPGVASGVSLV..DKTLVFA.....................TKSV..F...AN-SA...TCYDITGPAP-----AE....RCVFNSACTTLNGLGGLA-TYCYK.NGLVD...............GAKLYTDLQPNSHYSMAD..G.GY..VKL..PDVLASGfGFRTVKTQETTYCRVGQCVNSKAGVCFGANRFLVY.NEDSG..-TDFVCGTGLMSLMYNLLSVFSSSFSVMAMSGQIVLNCAVALFAIFACMLVTKFKRMFGDLSLGVCSVICVAIVNNLSYIVTQ-NAVTMVAYAVLYFLCTRTF--RYSWIYHTGYCIAYFTLAPWWLI-f.
R1AB_CVMJH/2862-3218                   ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlvY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDRV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGVMH...............NASLYSSLVPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
R1A_IBVB/2299-2657                     .................................mevsksfvhpmyd-----------.--VNSTlHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGR-.--..P.YDNSRNCPIVTAVID....GD.-GTV..ATGVPGFVSWV..MDGVMFIhmtqt...........erkpwYIPT..W...FNREI...VGYTQDSIITEGSFYTS....IALFSARCLYLT-ASNTPQLYCFNgDNDAP...............GALPFGSIIPHRVYFQPN..G.VR..LIV..PQQIL-H.TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVL.FNDEYtsKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA-c.
T2B9U0_MERS/2771-3126                  ..............................................YLCLPTFSMVP.VEFYED.RILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEH.VG.gV.YDNSITCPLTVAVIA....GV.AGAR..IPDVPTTLAWV..NNQIIFF.....................VSRV..F...ANTGS...VCYTPIDEIPYKSFSDS....GCILPSECTMFRDAEGRMTPYCHD.PTVLP...............GAFAYSQMRPHVRYDLYD..G.NM.fIKF..PEVVFES.TLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDHHlnRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTC..
B1PHI6_9ALPC/2745-3085                 ..........................................tffl----CLSISEG.LVATSF.ADFGFKYIKDGVMHDFDQPLSCVHNVFDNFNSWHEAR.FG..SiPSNMLKCPIVVGTLD....DV.--RN..VPGVPSGIVLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTT-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............GSKRYFDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLMSFVKNLFNTFTMSLSVMALSGQVIFNCVVAAMAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV..
B1PHI7_9ALPC/2745-3085                 ..........................................tffl----CLSISEG.LVATSF.ADFGFKYIKDGVMHDFDQPLSCVHNVFDNFNSWHEAR.FG..SiPSNMLKCPIVVGTLD....DV.--RN..VPGVPSGIVLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTT-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............GSKRYFDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLMSFVKNLFNTFTMSLSVMALSGQVIFNCVVAAMAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV..
A0A0U1WHG0_SARS/2760-3114              ............................................yt--IMPVHSLSV.HDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR.GG..S.YRNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRT.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLD...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSSIVPFWIT-a.
B2BW32_9GAMC/2274-2636                 ...........................................lmi---SLIAPTFT.PSVVEL.AASGYKVIDNGVIRPIVETDNCFANKYAGFNDWYYGF.VG..KyPYNSVDCPVVVALTTimdaNM.KGAI..VPGYAGNMAWL..NGQIVHY.....................RHEFswFtgsSAEGI...VGYTRDIVVYGEDFIKS....LALISARCVKLMMVSER--LYCYGgSNDAI...............DALPFTAIQPHVVYNDAI..GvGK..LVV..PEQLL-Y.KPYIVYTQAREYCRAGVCEQAKEGYCINFNGEWAL.FNQHYtsKDGVYCGETPMSVVMSIINAYIYQGTTTSFFNRFCVLSVMMLIALVALVYVVKFQAFFKTYAGLACAILLSWGFNAIMLLSYSVNPIVVMPLIVVYMYVALTVTTPTAIIMHVAFLVTIVPMLPYSLM-a.
B8Q8U6_SARS/2720-3119                  tcattrqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
R1AB_BCHK9/2634-2984                   ............................................qw--FTPWYIMRP.I---EY.NVVDFKVIDNAVIRDITSADQCFANKFSAFENWYSNR.YG..S.YVNSRGCPMVVGVVS....DI.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPHYAINYDVFDTS....ACVLAATCTLFSSASGERMPYCAD.AALIQ...............NASRYDMLKPHVMYPFYE.hS.GY..IRF..PEVIS-A.GVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV..
C0KYZ6_9BETC/2862-3218                 ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlvY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGVMH...............NASLYSSLVPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
Q06BE1_9BETC/2772-3128                 ..............................................WCLMPTYTVHK.PDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVVD....QD.LGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQPYCYT.EGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
F2YDB2_SARS/2763-3119                  ...........................................vcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
B1PHJ4_9ALPC/2689-3029                 .................................tfffcvgisegli-----------.--ATSL.EGFGFKYIKDGVMHDFDKPLSCVHNVFDNFNSWHEAR.FG..SiPSNSLKCPIVVGTLD....DV.--RN..VPGVPSGILLV..GKTLVFA.....................IKAV..F...TDAGN...-CYGLNGLTN-----AG....ACLFNSACTKLEGLGGT-HVYCYK.DGLFE...............GSKRYSDLVPHSNYKMED..G.NF..VKL..PETLVNGfGINIIRTMETTYCRVGECLKSKAGVCFGANRFFVY.NDDFG..-SDYICGNGLFSFVKNLFNTFTMSVSVMALSGQVIFNCAVAALAIFICFLVVKFKRMFGDLSYGVCSVIAAVTINNLSYVFTQ-NMLFMFVYATFYFLAVRNL--NYAWIWHASYVVAYFNLAPWFIIV..
R1A_CVHOC/2772-3128                    ..............................................WCLMPTYTVHK.SDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVID....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFTMADGSPQPYCYT.DGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
E0ZN59_BCHK9/2609-2959                 ...........................................qwf---TPWYILRP.---IDY.KVVDFKVMDNAVLRDITAADQCFANKFSAFDGWYSNR.YG..S.YVNSRNCPMVVGVVS....DI.IGTL..VPGLPARFLRV..GTTLLPL.....................VNFG..L...GGASS...VCYTPYHAINYDVFETS....SCVLAATCTLFASANGEPAPYCAD.ALLIN...............NASGYDTLHPHVMYPFYE.hA.GY..IRF..PEVVS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSIQPRWIV.NNAYFrqQQGVYCGTNVLDLFMSMLLPIFAPVGAVDITTSILMGAVLAVVVSMALYYLLRFRRAFGDYSGVIFANIVAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVT-i.
V5TFR4_9GAMC/2274-2636                 ..........................................lmis----LIAPTFT.PSVVEL.ASSGYKVIDNGVIRPIVETDNCFANKYAGFNDWYYGF.VG..RyPYNSVDCPVVVALTTimdaNM.KGAI..VPGYAGNMAWL..NGQIVHY.....................RHEFswFtgsSAEGI...VGYTRDIVVYGEDFIKS....LALISARCVKLMMVSER--LYCYGgSNDAI...............DALPFTAIQPHVVYNDAV..GvGK..LVV..PEQLL-Y.KPYIVYTQAREYCRAGVCEQAKEGYCINFNGEWAL.FNQHYtsKDGVYCGETPMSVVMSIINAYIYQGTTTSFFNRFCVLSVMMLLALIALVYVVKFQAFFKTYAGLACAILLSWGFNAIMLLSYSVNPIVVMPLIVVYMYVALTVTTPTAMIMHVAFLVTIVPMLPYSLM-a.
A0A125R5A4_9ALPC/2425-2772             ............................................gl--CSIYSVATQ.SYIDSA.EGYDYMVIKNGVVQPFDDSINCVHNTYKGFAVWFKAK.YG..FvPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGTAVSKGSYFD....TCVFNSACTTLAGLGGT-VVYCAK.QGLVE...............GAKLYSELMPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICASSTMGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAITYYFTTRKL--AYPGILDAGFIIAYVNMAPWYVLV..
R9QTB2_SARS/2757-3111                  .............................................y-IIMPVHSLSV.HDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFESWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A0K2RW65_9BETC/2807-3163             ..............................................WCLMPTYTVHK.SDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVVD....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQSYCYT.EGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVSDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTFSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
K4K1U5_9ALPC/2538-2879                 ....................................cvflatgfvd---------YT.SMVVSA.SDYDFRYIEGGKLKVFETPLKCVHNTFANFDNWYNSK.FG.fT.PSKDKRCPIVVGVSN....--.EART..IPGVPSGVFLF..GKTLVFA.....................LQTV..F...GG-SH...TCYDMTGPAP-----LD....RCIFDSACTTLNGLGGER-VYCYK.NGLVE...............GSLLYTDLQPNSYYSLPV..G.GY..VRL..PEVITSGlGFRTVRTQQTTYCRMGECVDSKAGICFGANRFLVY.SAESG..-MDFVCGTGLLSLLLNVFNMFSSSFSVLAMSGQIVFNCVLTCVVIMTCLLVTKLKRMFGDLSLGVCTVVCVAIVNNLSYIITQ-NAVMMVVYAILYFLSTRTF--KYGWIWHVGYCIAYLSMAPWWLL-f.
A0A0P0LKV0_CVH22/2513-2852             ...........................................lcf--FMPYFMYDT.--VHSF.EGYDFKYIENGQLKNFESPLKCARNVFDNFNEWHYAR.FG..SvPLNKQSCPIVVGVSE....--.VVNT..VAGVPANVYLA..GKTLVFT.....................LQSA..F...GSAG-...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGD-NVYCYN.TDLME...............GSLPYSSLQANAYYKYDS..G.NF..IKL..PEIIAQGfGFRTVRTIATKYCRVGECADSNAGICFGLDKWFVN.DGRV-..NNGYVCGTGLWDLVFNILSMFSCSFSVAAMSGQILFNCAVGAFVILCCFLVTKFRRMFGDLSVGVCTVVMAVLLNNVSYIVTQ-NLVSMVAYAVLYFFATRQL--HYAWIWCAAYLVAYVSFAPWWLC-a.
Q0ZJB1_CVHK1/2859-3215                 ..............................................WALLPTYSVYK.SDIHLP.AYASFKVIDNGVVRDISVNDLCFANKFFQFDQWYEST.FG.sFyYHNSMDCPIVVAVMD....ED.IGST..MFNVPTKVLRH..GFHVLHF.....................LTYA..F...ASDSV...QCYTPHIQISYNDFYAS....GCVLSSLCTMFKRGDGTPHPYCYS.DGVMK...............NASLYTSLVPHTRYSLAN.sN.GF..IRF..PDVISEG.IVRIVRTRSMTYCRVGACEYAEEGICFNFNSSWVL.NNDYYrsMPGTFCGRDLFDLFYQFFSSLIRPIDFFSLTASSIFGAILAIVVVLVFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPICACVYACFYFYVTLYFPSEISVIMHLQWIVMYGAIMPFWFCV..
A3EXC0_BCHK4/2826-3180                 ..............................................WFCLPSYSIAT.VNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV.YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............GASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVVNPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a.
H9BQZ9_9NIDO/2033-2402                 .........................................flanq-----ITLNTV.PTTKSDiRASTFYVVRDGVLDTIRSNDKCFANKFMAFDSFIQA-.--..P.YTNSPDCPVVVGVVD....-V.TTHS..IPGIPAGVIHR..DGLILNIyeqaiyethqrqsmvrdalslKTAN..L...FNLGKrvvVGYTQHEVVVGTSYLNS....PALFNAKCTFLQ-YQGNRHLYCYD.AVPTE...............-HKLYSDVLPHVEYKAIDinG.DL..VPFkiPEQIM-F.YPHIVRYTSNSYCRMGHCFNTNPGICISFTDEFPY.SENV-..KPGVYCADTSLQLLSNLVLGTVSGIHIFTSTAALLGST--IVIILCVV-AVLAVQRFFKEYTTFVMYTCGLAFVNIIGIALMYKCLVFAIFYYAIYLYFVLTFPSFKRNVALFYLAVVIVPHVSNMQL-l.
T2B9I2_MERS/2771-3126                  ..............................................YLCLPTFSMVP.VEFYED.RILDFKVLDNGIIRDVNPDDKCFANKHRSFTQWYHEH.VG.gV.YDNSITCPLTVAVIA....GV.AGAR..IPDVPTTLAWV..NNQIIFF.....................VSRV..F...ANTGS...VCYTPIDEIPYKSFSDS....GCILPSECTMFRDAEGRMTPYCHD.PTVLP...............GAFAYSQMRPHVRYDLYD..G.NM.fIKF..PEVVFES.TLRITRTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDHHlnRPGVYCGSDFIDIVRRLAVSLFQPITYFQLTTSLVLGIGLCAFLTLLFYYINKVKRAFADYTQCAVIAVVAAVLNSLCICFVASIPLCIVPYTALYYYATFYFTNEPAFIMHVSWYIMFGPIVPIWMTC..
R1AB_FIPV/2438-2785                    ............................................gl--CSVYSVATQ.SYIDSA.EGYDYMVIKNGVVQSFDDSINCVHNTYKGFAVWFKAK.HG..FvPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGAAVSKNSYFD....TCVFNSACTTLTGIGGT-VVYCAK.QGLVE...............GAKLYSELLPDYYYEHAS..G.NM..VKI..PAIIRSF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICGSSTLGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAIIYYFTTRKL--AYPGVLDAGFIIAYLNMAPWYVLV..
R1AB_SARS2/2788-3142                   ..............................................YLITPVHVMSK.HTDFSS.EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR.GG..S.YTNDKACPLIAAVIT....RE.VGFV..VPGLPGTILRT.tNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYTDFATS....ACVLAAECTIFKDASGKPVPYCYD.TNVLE...............GSVAYESLRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVL.NNDYYrsLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT-i.
A0A0U2UMS4_9ALPC/2411-2758             ............................................gl--CSVYSFATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFSDWFKAK.YG..FgPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-DRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DKEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIATCYGILKFKKIFGDCTFLIVMIIVTLIVNNVSYFVTQ-NTFFMIIYAIVYYLTTRKI--AYPGIFDAGFIIAYINMAPWYVI-t.
A0A0K1YZY7_SARS/2727-3119              .......vvnvittkislkggkivstwfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A125R5A3_9ALPC/2425-2772             ............................................gl--CSIYSVATQ.SYIDSA.EGYDYMVIKNGVVQPFDDSINCVHNTYKGFAVWFKAK.YG..FvPTFDKSCPIVLGTVF....-D.LGNMrpIPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...VCYDHTGTAVSKGSYFD....TCVFNSACTTLAGLGGT-VVYCAK.QGLVE...............GAKLYSELMPDYYYEHAS..G.NM..VKI..PAIIRGF.GLRFVKTQATTYCRVGECTESQAGFCFGGDNWFVY.DKEFG..-DGYICASSTMGFFKNVFALFNSNMSVVATSGAMLANIVIACLAIAVCYGVLKFKKIFGDCTLLVVMIIVTLVVNNVSYFVTQ-NTFFMIVYAITYYFTTRKL--AYPGILDAGFIIAYVNMAPWYVLV..
A0A1X9JQL5_9ALPC/2382-2733             ........................................asvclf-----NFNFKT.ATFDSV.PEYDFRYIENGAMKFFNKGLPCVYNLYKEFPEWHKQR.YG..FvPSFSVSCPIIVGASD....-L.NTNV..VPNVPSNVVLV..-GRILVF.....................SYQT..Y...FGHSK...LCFSDAYNFNMAKISDGdcarAAVFPSACTTLQGLGGS-HVYCFM.DGLYP...............GAKLYSDLVPHLRYYTDA..N.NY..IML..PEVVMRGfGFKVTRFLGETYCRVGECVSSNAGVCVGADEWYVF.DSNIG..-DNYVCSEDVRGLVWAFFSFFNANIGTLLLTGQLTLNIVIACCIVCVCYTFVKFKRIFGDMSTLVLMVLAATVINSVSYLFTV-NFVFLMLYTCVYFISTRKV--YFSMVWDLMYVVAYVFVAPWYVVV..
R1A_CVMA5/2859-3215                    ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlaY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............NASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
R1A_BCHK5/2862-3217                    ..............................................YLCLPAFNMSQ.VSFHED.RILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEH.YG.gL.FNNDISCPVTVAVIA....GV.AGAR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............GASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f.
E0ZN51_BCHK9/2629-2979                 ............................................qw--FTPWYIMRP.I---NY.NVVDFRVIDNAVIRDITPADQCFANKFSTFDAWYSNR.YG..S.YVNSRSCPMVVGVVS....DV.VGNL..VPGLPARFLRV..GATLLPL.....................VNYG..L...GAVGS...VCYTPHHSISYDVFETS....ACVLAATCTLFSSANGELMPYCAD.SALIQ...............NASRYDTLNPHVMYPFYE..QfGY..IRF..PEVIS-A.GVHIVKTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQPGVYCGTGTLDLFLNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMAFLYATCYFGSDIACMMHVSFLIMFVGVVPLWVT-a.
R1A_SARS/2763-3119                     ...........................................vcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A023YA54_MERS/2872-3227              ..............................................YFTLPTFNMET.VEFYED.RTLEYKVLDNGVIRDITSGDKCFANKYRSFAQWYHEH.VG.gS.FDNDIACPVTVAVIA....GV.AGAR..VPGVPTTLAWV..KKQIVFF.....................VSRV..F...ANSPN...VCYTPRSEIPYKSFSDS....GCILPSECTMFRDAEGKMVPYCYD.PTVLP...............GAHAYANMKPHVRYDMFE..G.NM.fIKF..PEVVFES.TIRVTKTLSTQYCRFGSCEYAQEGVCITTNGSWAI.FNDFHanRPGVYCGFDYLDIVRRLALGVFQPITYFQLTTSLVLGIGLCAFMTLVFYYINKVKRALADYTQCAVIAVCATIMNSLCLCFVVACPLCVVPYTALYYYATFYFTNEPAFIMHLSWFVMFGAVVPVWTT-c.
R1AB_BCHK4/2816-3170                   ..............................................WFCLPSYSIAT.VNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV.YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............GASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a.
A0A0U1UZ20_9ALPC/2652-2992             .................................fflllnasefgyv-----------.--ATSF.EDFGFKYIEHGVLKDFDGPLSCVHNVFDNFNAWHEAR.YG..VvPINRRICPIVVGTID....N-.-IRF..VPNVPSGIVLI..GKTLVFA.....................VKAV..F...TETGN...-CFNLNGLTT-----LG....SCIFNSACTNMDGLGGPA-TYCYK.EGLFE...............NSKLYSDLVPHSHYKLED..G.NF..IKL..PETLARGlGFVTIKTMETTYCRVGECLDSKAGVCFGLDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLSIFTSSFSVMALSGQVMFNCIVAAIAVVVCFLVIKFKRMFGDLSMGVCTVVAVVLINNVSYIITQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHIGYVVAYFTLAPWFLV-a.
A0A0U1WHK4_SARS/2721-3119              .cattrqvvnvittkislkggkivstwfklmlkatllcviaalvcy-IVMPVHTLSA.HDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDSWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLVEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEAGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
S5Z1D1_9ALPC/2583-2923                 ........................................lffvts----LWNFAE-.-SYHSG.SEFGYKYIENGALKDFSGPLDCVHNIFDDFMAWHHAK.YG.vQ.PINSRRCPIVVGVDE....N-.-VRT..IPGVSAGVMLV..GKTLVFA.....................VKSV..Y...SSAG-...LCYDEFGAAA-----PE....QCLFNSACTTLKGLGGTS-TYCYR.SGLVS...............DSGLYRDLLHDSHYFLPD..G.NY..VKF..PEVISRGfGFRTVRTAATTYCRVGQCVDSKQGVCFGLDRFLVY.SAESG..-SDFVCGTGLMSLLYNVFGIFTRSIPVVVLSGQIMFNCVVAFLAVSCCFLFTKFKRLFGDMSFGVFTVCCCVLVNNLSYIITQ-NYMGLVFYTVLYFFSTKTV--RYAWIWHIGYFVAYFLVAPWWLL-g.
H9BZX5_9BETC/2860-3216                 ..............................................WAFMPTYAVHK.SDMQLS.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlaY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTIVAHADGTPQPYCYT.EGVMH...............NASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
R1A_SARS2/2788-3142                    ..............................................YLITPVHVMSK.HTDFSS.EIIGYKAIDGGVTRDIASTDTCFANKHADFDTWFSQR.GG..S.YTNDKACPLIAAVIT....RE.VGFV..VPGLPGTILRT.tNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYTDFATS....ACVLAAECTIFKDASGKPVPYCYD.TNVLE...............GSVAYESLRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDSEYCRHGTCERSEAGVCVSTSGRWVL.NNDYYrsLPGVFCGVDAVNLLTNMFTPLIQPIGALDISASIVAGGIVAIVVTCLAYYFMRFRRAFGEYSHVVAFNTLLFLMSFTVLCLTPVYSFLPGVYSVIYLYLTFYLTNDVSFLAHIQWMVMFTPLVPFWIT-i.
R1AB_BCHK5/2862-3217                   ..............................................YLCLPAFNMSQ.VSFHED.RILTYKVVENGIIRDITPSDTCFANKYQSFSKWFNEH.YG.gL.FNNDISCPVTVAVIA....GV.AGAR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............GASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f.
R1A_CVH22/2507-2847                    .........................................ylcff---MPYFMYDI.--VSSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG.fT.PLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGN-NVYCYN.TALME...............GSLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVESNAGVCFGFDKWFVN.DGRVA..-NGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQ-NLVTMIAYAILYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a.
D9J203_9ALPC/2396-2748                 .............................................g-LFSCYNGYTP.TYVTSA.VGYDFMLIKNGKIQGFDDTIDCVHNVYKDFPLWYKGK.YG.rQ.ITYSRACPIVVGTVF....DL.VDNMrpVPDVPAYVTLV..-GRSLIF.....................AINA..V...FGNTD...LCYDHQGVAKSRNSMFD....NCVYNAACTQLTGIGGTA-IYCFK.EGVMNgn...........ilQHKTYSEIVPETFYELKD..G.NM..IKL..PTIIRGL.GLRIVQTLATTYCRVGECTQSKEGFCVGLDNWFVY.DKNFG..-ESYICGDSVFGFATNVFRLFNQNLSVVATSGYMITNLIIALCAIAVCYFFLKFKRVFGDCSMLVIMIVIALLCNNVSYFFTR-NLVLMIVYATFYYFLSRRL--PYPGVMDLGFIIAYFNMAPWWILV..
A3EXA2_BCHK4/2816-3170                 ..............................................WFCLPSYSIAT.VNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV.YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............GASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a.
H9BR24_9NIDO/1988-2349                 ...........................................ycf---MWMVTPSPpTTLVDV.PATDFRLIRNGVFDVIRSTDTCFSNKFVSFSTWLNR-.--..P.FTNSPDCPVVVGAIS....-T.VGAQ..IAGLPGQVLWR..NNLLVHVfdkfsts......vlgdlnllGHAS..W...NKRNA...VGYTASTVVTGNSYLNS....IALYNSECVYLR-LEGQRELYCYD.R-VND...............QHRLYSDIKPHVTYTVESsdG.KL..LPLvvPDQIM-Y.TPYIVRFSQVNYCRMGHCFDTKPGICISFIHDFIA.YTDNL..PPGVFCGDNILHLLTNAVIGSIAAKDAFKSTTALMCS--TGAIIVCVL-VVLFIQKLFKGYTTFVLIVVLNAIINLILLYTYMYIPVLAILLYGLYCYLILLCTPMARTVAVILIAVTVIPLCTNTFI-i.
S5YAF0_9ALPC/2583-2923                 ........................................lffvts----LWNFAE-.-SYHSG.SEFGYKYIENGALKDFSGPLDCVHNIFDDFMAWHHAK.YG.vQ.PINSRRCPIVVGVDE....N-.-VRT..IPGVSAGVMLV..GKTLVFA.....................VKSV..Y...SSAG-...LCYDEFGAAA-----PE....QCLFNSACTTLKGLGGTS-TYCYR.SGLVS...............DSGLYRDLLHDSHYFLPD..G.NY..VKF..PEVISRGfGFRTVRTAATTYCRVGQCVDSKQGVCFGLDRFLVY.SAESG..-SDFVCGTGLMSLLYNVFGIFTRSIPVVVLSGQIMFNCVVAFLAVSCCFLFTKFKRLFGDMSFGVFTVCCCVLVNNLSYIITQ-NYMGLVFYTVLYFFSTKTV--RYAWIWHIGYFVAYFLVAPWWLL-g.
B6VDX7_THCOV/2000-2371                 ..................................matlavyvyqpi---------YP.TVMSDI.PTSGFYVIRDGVLDNIRSTDTCFSNKFVSFDAYLQA-.--..D.YVNSHNCPVVVGVAD....-V.ATKS..IPGIPAGVIHR..DSGILHIyeqslydrlqrqsmvqealglKTRA..L...FNIGYrtvVGYTRSDVVVGASYMHS....PSLFNAKCTYLE-YQDKRHLYCFD.KVDRE...............-HKLYADVIPHVEYKAVDfnG.EL..VPFkiPEQLL-L.YPHIVRYTSNYYCRMGHCFKTNPGVCVSFTDEFPY.SENV-..QPGVYCADSGFQLLTNFIIGTVTGVHIFTSTAALLGS--TCFILLCVF-AILAFQRLFKEYTTFVLHTLIIAGVNIIGIALVYKFTALAIVYYAIYLYCILTFVPIKRNIALFYFAVVLVPHISNMQL-l.
A0A0K2RVJ3_9BETC/2807-3163             ..............................................WCLMPTYTVHK.SDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVVD....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQSYCYT.EGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVSDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTFSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
Q0PL14_9ALPC/2410-2757                 ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFSDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYTIVYYFITRKI--AYPGIFDAGFIIAYINMAPWYVI-t.
Q6UZF5_SARS/2720-3119                  tcattrqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
R1A_CVMJH/2862-3218                    ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlvY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDRV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGVMH...............NASLYSSLVPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVQPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
B8Q8S5_SARS/2763-3119                  ...........................................vcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A0F6SKM6_9GAMC/2329-2686             ................................yygvkmhpmydvns-----------.-----TfPVENFKVIENGVLRDLVSEDNCFSNKFLGFDDFWGK-.--..P.YTNSRDCPIVTALID....G-.TGFV..AAGVPGYVHWV..MDNTMFIhtaqa..........eqkpwyAPSW..F...PQEDV...VGYTIDSVITQGEFYSS....IATFPARCMYFA-TSAAPQLYCYGgENDAP...............GAMPYESVQPHRDIFQPN..N.VR..FSI..PQQIM-Y.TPYIVKLASDNYCRGSVCEKTKLGYCYSWNPRWVL.YNDDYvkLPGVYCGATVRELVFSMLGSFFTGVSPN-LYLHLTTMFLVLLCVMVVFALVIRFQGVFKAYTPVVFAVIMVWGLNVFMLCVYSYNPFVAVMLLALYCYMSLMVGRTVSTVMHLWVVFTFIMVVPWWLA-c.
A3EXI9_BCHK9/2629-2979                 ............................................qw--FTPWYIMRP.I---EY.NVVDFKVIDNAVIRDITPADQCFANKFSAFENWYSNR.YG..S.YVNSRSCPMVVGVVS....DV.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPYHAINYDVFDTS....ACVLAATCTLFASANGEPMPYCAD.SALIQ...............NASRYDTLNPHVMYPFYE.hA.GY..IRF..PEVIS-A.GIHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV..
A0A0F6WGL5_9GAMC/2329-2686             ................................yygvkmhpmydvns-----------.-----TfPVENFKVIENGVLRDLVSEDNCFSNKFLGFDDFWGK-.--..P.YTNSRDCPIVTALID....G-.TGFV..AAGVPGYVHWV..MDNTMFIhtaqa..........eqkpwyAPSW..F...PQEDV...VGYTIDSVITQGEFYSS....IATFPARCMYFA-TSAAPQLYCYGgENDAP...............GAMPYESVQPHRDIFQPN..N.VR..FSI..PQQIM-Y.TPYIVKLASDNYCRGSVCEKTKLGYCYSWNPRWVL.YNDDYvkLPGVYCGATVRELVFSMLGSFFTGVSPN-LYLHLTTMFLVLLCVMVVFALVIRFQGVFKAYTPVVFAVIMVWGLNVFMLCVYSYNPFVAVMLLALYCYMSLMVGRTVSTVMHLWVVFTFIMVVPWWLA-c.
R1A_BCHK4/2816-3170                    ..............................................WFCLPSYSIAT.VNFNDD.RILTYKVIENGIVRDIAPNDVCFANKYGHFSKWFNEN.HG.gV.YRNSMDCPITIAVIA....GV.AGAR..VANVPANLAWV..GKQIVLF.....................VSRV..F...AN-TN...VCFTPINEIPYDTFSDS....GCVLSSECTLFRDAEGNLNPFCYD.PTVLP...............GASSYADMKPHVRYDMYD.sD.MY..IKF..PEVIVES.TLRITKTLATQYCRFGSCEESAAGVCISTNGSWAL.YNQNYstRPGIYCGDDYFDIVRRLAISLFQPVTYFQLSTSLAMGLVLCVFLTAAFYYINKVKRALADYTQCAVVAVVAALLNSLCLCFIVANPLLVAPYTAMYYYATFYLTGEPAFIMHISWYVMFGAVVPIWML-a.
R1AB_BC512/2554-2894                   .........................................lfvat---SLLDFSAQ.--VTSD.TQYDFKYIENGVLKVFEKPLDCVHNAFVNFNEWHNAK.FG..SiPTNSRRCPIVVGTSD....EV.--RY..IPGVPAGVFLY..-GKSLIF.....................AMST..I...FGTSG...LCFDDRGLTD-----PD....SCIFNSACTTLSGIGGR-NVYCYR.EGVVD...............NAKLYSSLLPHSYYRLMD..G.NH..IVL..PEIITRGfGIRTIKTQAMTYCRTGECIDSQAGVCVGLDRFFVY.SKTPG..-SDYVCGTGFFSLLFNVIGMFSNSIPVTVMSGQILLNCVVAFTAVMACFAFTKFKRLFGDMSFGVLSVGLCTVVNNLSYVVTQ-NSIGMLAYATLYFLCTKGV--RYSWVWHVGFAISYCFLAPWWVV-l.
H9TEX0_9ALPC/2414-2761                 ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGSAVSKDSYFD....TCVFNAACTTLTGLGGTI-IYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFRLFNSNMSVVATSGAMLVNIIIACLAIAACYGVLKFKKIFGDCTLLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFTTRKL--AYPGILDAGFIIAYINMAPWYVI-t.
F2YDB1_SARS/2720-3119                  tcattrqvvnvittkislkggkivstcfklmlkatllcvlaalvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
R1A_CVM2/2805-3161                     ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYEST.FGlvY.YRNSRACPVVVAVID....QD.IGYT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGIMH...............NASLYDSLAPHVRYNLAN.sN.GY..IRF..PEVVSEG.IVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
R1AB_IBVB/2299-2657                    .................................mevsksfvhpmyd-----------.--VNSTlHVEGFKVIDKGVLREIVPEDTCFSNKFVNFDAFWGR-.--..P.YDNSRNCPIVTAVID....GD.-GTV..ATGVPGFVSWV..MDGVMFIhmtqt...........erkpwYIPT..W...FNREI...VGYTQDSIITEGSFYTS....IALFSARCLYLT-ASNTPQLYCFNgDNDAP...............GALPFGSIIPHRVYFQPN..G.VR..LIV..PQQIL-H.TPYVVKFVSDSYCRGSVCEYTRPGYCVSLNPQWVL.FNDEYtsKPGVFCGSTVRELMFSMVSTFFTGVNP-NIYMQLATMFLILVVVVLIFAMVIKFQGVFKAYATTVFITMLVWVINAFILCVHSYNSVLAVILLVLYCYASLVTSRNTVIIMHCWLVFTFGLIVPTWLA-c.
A0A0P0ILY9_CVH22/2513-2852             ...........................................lcf--FMPYFMYDT.--VHSF.EGYDFKYIENGQLKNFESPLKCARNVFDNFNEWHYAR.FG..SvPLNKQSCPIVVGVSE....--.VVNT..VAGVPANVYLA..GKTLVFT.....................LQSA..F...GSAG-...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGD-NVYCYN.TDLME...............GSLPYSSLQANAYYKYDS..G.NF..IKL..PEIIAQGfGFRTVRTIATKYCRVGECADSNAGICFGLDKWFVN.DGRV-..NNGYVCGTGLWDLVFNILSMFSCSFSVAAMSGQILFNCAVGAFVILCCFLVTKFRRMFGDLSVGVCTVVMAVLLNNVSYIVTQ-NLVSMVAYAVLYFFATRQL--HYAWIWCAAYLVAYVSFAPWWLC-a.
B7U2M9_9BETC/2772-3128                 ..............................................WCLMPTYTVHK.SDFQLP.VYTSYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVVD....QD.LGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFAMADGSPQPYCYT.EGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRIVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSIVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
R1A_BCHK9/2634-2984                    ............................................qw--FTPWYIMRP.I---EY.NVVDFKVIDNAVIRDITSADQCFANKFSAFENWYSNR.YG..S.YVNSRGCPMVVGVVS....DI.VGSL..VPGLPARFLRV..GTTLLPL.....................VNYG..L...GAVGS...VCYTPHYAINYDVFDTS....ACVLAATCTLFSSASGERMPYCAD.AALIQ...............NASRYDMLKPHVMYPFYE.hS.GY..IRF..PEVIS-A.GVHIVRTMAMEYCKVGRCDVSEAGLCMSLQPRWVV.NNAYFrqQSGVYCGTSAFDLFMNMLLPIFTPVGAVDITTSILMGALLAVVVSMSLYYLLRFRRAFGDYSGVIFTNILAFVLNVIVLCLEGPYPMLPSIYAMVFLYATCYFGSDIACMMHVSFLIMFAGVVPLWVTV..
B2BW31_9GAMC/2274-2636                 ...........................................lmi---SLIAPTFT.PSVVEL.AASGYKVIDNGVIRPIVETDNCFANKYAGFNDWYYGF.VG..KyPYNSVDCPVVVALTTimdaNM.KGAI..VPGYAGNMAWL..NGQIVHY.....................RHEFswFtgsSAEGI...VGYTRDIVVYGEDFIKS....LALISARCVKLMMVSER--LYCYGgSNDAI...............DALPFTAIQPHVVYNDAI..GvGK..LVV..PEQLL-Y.KPYIVYTQAREYCRAGVCEQAKEGYCINFNGEWAL.FNQHYtsKDGVYCGETPMSVVMSIINAYIYQGTTTSFFNRFCVLSVMMLIALVALVYVVKFQAFFKTYAGLACAILLSWGFNAIMLLSYSVNPIVVMPLIVVYMYVALTVTTPTAIIMHVAFLVTIVPMLPYSLM-a.
B1PHK0_9ALPC/2652-2992                 .................................fflllnasefgyv-----------.--ATSF.EDFGFKYIEHGVLKDFDGPLSCVHNVFDNFNAWHEAR.YG..VvPINRRICPIVVGTID....N-.-IRF..VPNVPSGIVLI..GKTLVFA.....................VKAV..F...TETGN...-CFNLNGLTT-----LG....SCIFNSACTNMDGLGGPA-TYCYK.EGLFE...............NSKLYSDLVPHSHYKLED..G.NF..IKL..PETLARGlGFVTIKTMETTYCRVGECLDSKAGVCFGLDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLSIFTSSFSVMALSGQVMFNCIVAAIAVVVCFLVIKFKRMFGDLSMGVCTVVAVVLINNVSYIITQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHIGYVVAYFTLAPWFLV-a.
H9BR34_9NIDO/1926-2295                 ...........................................yva---NGLTYNTV.PTVKSDiKVSGFYLIRDGVLDTIRAEDDCFMNKFLAFDSYIQK-.--..P.YVNSPQCPIVVGIAD....-V.TGLS..LPGIPAGVIQR..DGLILHIyeqslydkllrkslvdgvlniQTRN..L...FNIGNkmvVGYTQHEVVTGDSYLYS....PALFNAKCTFLL-YNNNRTLYCYD.KVDVP...............-HKLYSDVIPHVEYKAVDlnG.DY..VPFkiPEQLF-Y.YPHVVRYVSNNYCRMGHCFRTDPGVCVSFVDAFPYtQNDVY..--GVYCASNGYKLVTNLVLGTITGIHVFTSTAALLAS--TGVIIFCVIF-ALSFQRLFKEYTVFVVTTLVVAVFNIIGIFLFYKITLLAIVYYVVYVYIALLAAPVKRNIALFYLCVVFIPHITNMQL-l.
U5LR11_9BETC/2834-3189                 ..............................................YCILPTFNMAK.VDFNND.RILGYKVLDNGIVRDIGIDDKCFVNKYNTFDAWYQQE.FG.nS.YDNDYNCPVVVAVIA....GI.SGER..VPGVPTSLIWA..GNQILFF.....................VSRV..F...ATNNN...ICYTPHMEIAYERFSDS....GCVLSAECTLFKDAVGSMVPYCYD.ANVLP...............GAVPYDTMLPHVRYDLYD..S.NM.fIKF..PEVIVEG.TLRVVKTLKTQYCRLGSCEWSEAGICVSTNGSWML.NNEHYasKPGVYCGSDYLDMVRRSFMSVFQPITYFQLTTSLFMGLCLCLGIVVIFYYVNKFKRAFADYTQCVLIAVMATGLNGLCLCFVASNPFLIVPYSAFYYYSTFYVTNEPAVVMHASWLIMFLPVASVWVVC..
B8Q8U7_SARS/2763-3119                  ...........................................vcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIISTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLSGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRVFGEYNHVVAANALLFLMSFTILCLVPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
A0A0K1Z0N1_SARS/2762-3119              ..........................................lvcy-IVMPVHTLSI.HDGYTN.EIIGYKAIQDGVTRDIVSTDDCFANKHAGFDAWFSQR.GG..S.YKNDKSCPVVAAIIT....RE.IGFI..VPGLPGTVLRA.iNGDFLHF.....................LPRV..F...SAVGN...ICYTPSKLIEYSDFATS....ACVLAAECTIFKDAMGKPVPYCYD.TNLLE...............GSISYSELRPDTRYVLMD..G.SI..IQF..PNTYLEG.SVRVVTTFDAEYCRHGTCERSEVGICLSTSGRWVL.NNEHYraLPGVFCGVDAMNLIANIFTPLVQPVGALDVSASVVAGGIIAILVTCAAYYFMKFRRAFGEYNHVVAANALLFLMSFTILCLAPAYSFLPGVYSVFYLYLTFYFTNDVSFLAHLQWFAMFSPIVPFWIT-a.
H9AA60_9BETC/2793-3149                 ..............................................WCLMPTYSVHK.SDFELP.IYASYKVLDNGVIRDVSVNDVCFANKFEQFDAWYEST.FG.lTyYSNSMACPIVVAVID....QD.IGST..VFNVPTKVLRY..GFHVLHF.....................ITHA..L...STDSV...QCYTPHYQIPYSNFYDS....GCVLSSACTMFAMSDGKPQPFCYT.DGLMN...............NASLYSSLAPHVRYNLAN.vK.GY..IRF..PEVLREG.LVRIVRTRSMTYCRVGLCEVSDEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLVYQFLSGLSQPVDFFALTASSIAGAILAIIVVLVFYYLIKLKRAFGDYTSVVVVNVIVWFVNFLMLFVFQVYPTLSCIYAAFYFYITLYFPSEISVIMHLQWVVMYGSIMPLWF--sl
Q9J3E9_9BETC/2856-3212                 ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVSVTDACFANKFNQFDQWYEST.FGlaY.YRNSKACPVVVAVID....QD.IGHT..LFNVPTTVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.GGVMH...............NASLYSSLAPHVRYNLAS.sN.GY..IRF..PEVVSEG.IVRVVRTRSMTYCRVGLCEEAEEGICFNFNRSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
H9BR16_9NIDO/2000-2375                 ............................................cf--VTWLFTLTP.PTTMSHvEASNFRVIRNGVIDSIRADDYCFSNKYVAFDSFISR-.--..P.YINFPSCPVVIANVY....-V.AGDS..VPGIPGHLFHR..DNIIMHAydlhkyt.......lqhlfetPAST..W...NVPEV...AGYTQYSAVQ-GSYKDS....YALFTSKCTYLS-YKGDRELYCYD.NMTVQetlsfmgevetvinkTVKLYSELKPHVRYMTDTvdG.KIhdVII..PEQLW-Y.VPYLVKFTTNLYCRIGECFKTNPGYCLSFTNKFVV.NDGIQ..QPGVYCGDTLVQLLTNMFFGVVSATDIMKSSTALLLST---SLIIGIVFLVMLFQRIFKQYTSFVGVVVLNAFLNIIGLIILTICKPLAYGFFGLYFYVTLTLTPITRSIIYVFMVVTLLPHVSNLLL-l.
R1AB_CVHOC/2772-3128                   ..............................................WCLMPTYTVHK.SDFQLP.VYASYKVLDNGVIRDVSVEDVCFANKFEQFDQWYEST.FG.lSyYSNSMACPIVVAVID....QD.FGST..VFNVPTKVLRY..GYHVLHF.....................ITHA..L...SADGV...QCYTPHSQISYSNFYAS....GCVLSSACTMFTMADGSPQPYCYT.DGLMQ...............NASLYSSLVPHVRYNLAN.aK.GF..IRF..PEVLREG.LVRVVRTRSMSYCRVGLCEEADEGICFNFNGSWVL.NNDYYrsLPGTFCGRDVFDLIYQLFKGLAQPVDFLALTASSIAGAILAVIVVLVFYYLIKLKRAFGDYTSVVFVNVIVWCVNFMMLFVFQVYPTLSCVYAICYFYATLYFPSEISVIMHLQWLVMYGTIMPLWFC-l.
A3EXE7_BCHK5/2861-3216                 ..............................................YLCLPAFNMSQ.VAFHED.RILTYKVVENGIIRDITPSDACFANKYQSFVKWFNEN.HG.gL.FQNSIDCPVTVAVIA....GV.AGSR..VPNLPANVAWV..GRQIVLF.....................VSRV..F...ASSNN...VCYTPTAEIPYERFSDS....GCVLASECTLFRDAEGKINPYCYD.PTVLP...............GASAYDQMKPHVRYDMYD.sD.MY..IKF..PEVVFES.TLRITKTLATRYCRFGSCEDANEGVCITTNGSWAI.YNDHYanKPGVYCGDNYFDIVRRLGLSLFQPVTYFQLSTSLALGVMLCIFLTIAFYYVNKVKRALADYTQCAVVAVAAALLNSLCLCFVVSNPLLVLPYTALYYYATFYLTGEPAFVMHVSWFVMFGTVVPIWMV-f.
A0A0U1WHD1_9ALPC/2645-2985             .................................fflllnasefgyv-----------.--ATSF.EDFGFKFIENGVLKDFEGPLQCVHNVFDNFNVWHEAR.YG.vT.PINRRSCPIVVGTMD....N-.-IRF..VPNVPSGILLV..GKTLVFA.....................VKAV..F...TETGN...-CFDLSGLTT-----MG....SCIFNSACTNMDGLGGPA-TYCYK.EGLVE...............NSKLYADLVPHSHYKLED..G.NY..VKL..PETLARGlGFVTIKTMETTYCRIGECLDSKAGVCFGMDRFFVY.NTEFG..-GDYICGSGFLSFFRNVLGIFTSSFSVMALSGQVMFNCIVAAVAVVVCFLVIKFKRMFGDLSMGVCTVVAAVFVNNVSYIVTQ-NMLFMFLYAIFYFLAVKGL--KYAWIWHLGYVVAYFTLAPWFLV-a.
A8JNZ0_9ALPC/2483-2823                 ...................................lfvllncvgft-----------.EYASSL.PGYDFKYIEDGQLKPFVNGLYCVRNTFDTFMDWHAQK.FG.fK.PSNSDKCPIVVGASD....--.SGRV..VPGVASDVYLL..GKTLIFT.....................LKTV..F...GSAGH...-CYDVNGIAD-----GD....KCLFNSACTNLEGLGGTR-TYCYK.TGLIE...............GAMTYGDLQHDSYYRLSG..D.NY..VRL..PYVVVQGlGFRAVRTQATTYCRVGECVDSKAGMCFGADRWMVY.SNDIG..-SDFICGSSLVDLLRNILSVFNYNFSTMIMSGQVIFNCVLACVVVFGCYFVMKFRRVFGDMSLAVFTVCAAVVVNNLSYFVSL-NYVGMVVYSFLYFISTRGL--KYCFIWDVSYVVAYCLLAPWWLL-t.
U5KNA9_9BETC/2834-3189                 ..............................................YCILPTFNMAK.VDFNND.RILGYKVLDNGIVRDIGIDDKCFVNKYNTFDAWYQQE.FG.nS.YDNDYNCPVVVAVIA....GI.SGER..VPGVPTSLIWA..GNQILFF.....................VSRV..F...ATNNN...ICYTPHMEIAYERFSDS....GCVLSAECTLFKDAVGSMVPYCYD.ANVLP...............GAVPYDTMLPHVRYDLYD..S.NM.fIKF..PEVIVEG.TLRVVKTLKTQYCRLGSCEWSEAGICVSTNGSWML.NNEHYasKPGVYCGSDYLDMVRRSFMSVFQPITYFQLTTSLFMGLCLCLGIVVIFYYVNKFKRAFADYTQCVLIAVMATGLNGLCLCFVASNPFLIVPYSAFYYYSTFYVTNEPAVVMHASWLIMFLPVASVWVVC..
A0A0K1RLM9_9ALPC/2409-2756             ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFSDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PSIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNDFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFTTRKI--AYPGIFDAGFIIAYINMAPWYVI-t.
H9TEW9_9ALPC/2414-2761                 ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVALV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGSAVSKDSYFD....TCVFNAACTTLTGLGGTI-IYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFRLFNSNMSVVATSGAMLVNIIIACLAIAACYGVLKFKKIFGDCTLLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFTTRKL--AYPGILDAGFIIAYINMAPWYVI-t.
D9J202_9ALPC/2396-2748                 .............................................g-LFSCYNGYTP.TYVTSA.VGYDFMLIKNGKIQGFDDTIDCVHNVYKDFPLWYKGK.YG.rQ.ITYSRACPIVVGTVF....DL.VDNMrpVPDVPAYVTLV..-GRSLIF.....................AINA..V...FGNTD...LCYDHQGVAKSRNSMFD....NCVYNAACTQLTGIGGTA-IYCFK.EGVMNgn...........ilQHKTYSEIVPETFYELKD..G.NM..IKL..PTIIRGL.GLRIVQTLATTYCRVGECTQSKEGFCVGLDNWFVY.DKNFG..-ESYICGDSVFGFATNVFRLFNQNLSVVATSGYMITNLIIALCAIAVCYFFLKFKRVFGDCSMLVIMIVIALLCNNVSYFFTR-NLVLMIVYATFYYFLSRRL--PYPGVMDLGFIIAYFNMAPWWILV..
A0A140ESF0_9NIDO/2023-2392             ..........................................flas----QITLNTV.PTIKSDiRASTFYVVRDGVLDTVRSNDKCFANKFLAFDSFIQA-.--..P.YTNSPDCPVVVGVVD....-V.TTHS..IPGIPAGVIHR..DGLILNIyeqslyethqrqsmvrdalslKTAN..L...FNLGKrvvVGYTQHEVVVGTSYFNS....PALFNAKCTFLQ-YQDTRQLYCYD.TVPT-...............EHKLYSDVLPHVEYKAIDinG.DL..VPFkiPEQIM-F.YPHIVRYTSNSYCRMGHCFNTNPGICISFTDEFPY.SENV-..KPGVYCADTSLQLFSNLVLGTVSGIHIFTSTAALLGST--IVIILCVV-AVLAVQRFFKEYTTFVMYTCGLALVNIVGIALMYKCLVFAIFYYAIYLYFVLTFPSFKRNVALFYFAVVIVPHVSNMQL-l.
H9BR07_9NIDO/2011-2380                 ....................................caaaqltlha----------V.PTTKSDiRVSNFYVIRDGVLDTIRSTDNCFANKFLSFDSFHQA-.--..P.YTDSPACPVVVGVAD....-V.KTQS..VPGIPAGLVMR..DNLVLHIyelstyerdqrasmvrdalalRTNS..I...FNLDNrvvVGYTQYEVVVGSSYIRS....PALFNAKCTYLQ-LDGNRTLYCYD.AVDRP...............-HKLYSEVLPHVEYQAVDfnG.DV..VPFkiPEQII-Y.YPHVVRYVSNSYCRMGHCFNTNPGICVSFTDDFPY.SENNV..-PGVYCADTTFKLASKLLVGTVSGIHVFTSTAALIAS--TAVIILCVV-LVLAIQRLFKEYTTFVMYTCGLAVVNLVGIALMYKCIALAFLFYAIYLYFVFTFPSLKRSVALFYFSVVMLPHISNMQL-l.
A0A0U1UZC3_9ALPC/2413-2752             ..........................................yyat---SYITFGTM.--VGSF.PGYDFKYIEHGQLQEFSHGLTCVHNVFDNFMEWHFQK.FG.nT.PSTGKACPVIVGVGD....--.NGRT..LPGVPADVHLV..GQTLVFT.....................VKSV..F...-GNTN...LCYDTSGVVS-----AA....SCIFISACTVLEGLGGIS-TYCYK.DGIVE...............GAKLYSDLQPNAHYKFDN..D.NF..VKL..PEVLARGfGMRTVRTLDTTYCRVGECTESKAGICIGADRWLVY.NAESG..-SDFVCGASLLQLLYNVFRVFNTDFSTAALSGQMMFNVIVAGLAIMACFIITKFKRVFGDMSFGVFTVIITALVCNLSYFVTQ-NYLGLYTFSLLYYLTTRSF--RYEWIWHIGYVVSYYFLAPWWLML..
A0A088DIE1_9BETC/2927-3283             ..............................................YCLLPSFKSQP.LNMYSD.EIIDFKVIEDGSLRDITADDTCFSNKHSSFVSWLSRNgFK..M.TTTSRHCPITVAVVA....KK.VGDV..IPSLPGVVTRVlvRGQIMHF.....................LARV..F...SAAAN...ICYTPGTLIEYEDFLTS....ACVLPAECTIFKDSNGIAVPYCYD.VNALQ...............GSLPYSSLKHDVLYQLVD..N.SF..IKF..PKVLVEG.AFRIVRTMTTQYCRHGVCEDSMAGLCLSLRGSWVL.NNPYYtsQSGVYCGNDVVDLLMNILAPMFRPAGGMDITSSIVAGGILSLVITVVAYYILKLRRAFGDYQQVVVVNTLAFLCSFLVLCVSTQYPVLPTVYSILYFYMSLYMANEVSFIMHCSWCVMFVPIVPFWCT-a.
R1A_CVPPU/2413-2760                    ............................................gl--CSVYSVATQ.SYIESA.EGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAK.YG..FiPTFGKSCPIVVGTVF....DLeNMRP..IPDVPAYVSIV..-GRSLVF.....................AINA..A...FGVTN...MCYDHTGNAVSKDSYFD....TCVFNTACTTLTGLGGTI-VYCAK.QGLVE...............GAKLYSDLMPDYYYEHAS..G.NM..VKL..PAIIRGL.GLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVY.DNEFG..-NGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQ-NTFFMIIYAIVYYFITRKL--AYPGILDAGFIIAYINMAPWYVI-t.
R1AB_CVM2/2805-3161                    ..............................................WALMPTYAVHK.SDMQLP.LYASFKVIDNGVLRDVTVTDACFANKFIQFDQWYEST.FGlvY.YRNSRACPVVVAVID....QD.IGYT..LFNVPTKVLRY..GFHVLHF.....................ITHA..F...ATDSV...QCYTPHMQIPYDNFYAS....GCVLSSLCTMLAHADGTPHPYCYT.EGIMH...............NASLYDSLAPHVRYNLAN.sN.GY..IRF..PEVVSEG.IVRIVRTRSMTYCRVGLCEDAEEGVCFNFNSSWVL.NNPYYraMPGTFCGRNAFDLIHQVLGGLVRPIDFFALTASSVAGAILAIIVVLAFYYLIKLKRAFGDYTSVVVINVIVWCINFLMLFVFQVYPTLSCLYACFYFYTTLYFPSEISVVMHLQWLVMYGAIMPLWFCI..
A0A0U1WHG1_9ALPC/2358-2697             ...................................ymsvglfdfte-----------.-SVPSY.MGFDFKYIKEGRLHDFTERLDCVYSVFDNFDVWHESK.FG..TvPTKSIKCPIVVGVSD....S-.-VRT..LPGVPAGVMLV..GKTLVFA.....................VKTV..F...GETGN...-CYDTQGVTS-----TS....SCLFTSACTVLSGIGGTI-TYCYK.DGIVE...............GARTYSELVPNTYYKMED..G.RH..VIF..PEVLARGfGFRAVRTLATTYCRAGQCVDSKAGVCFGLDRFLVY.SADSG..-SDFVCGNGLLSLLYNVLAIFSSSFSVAALSGQIIFNLVVAAIAVFVCFTVVKFKRMFGDMSRGVCTVGAAVLVNNLSYVVTQ-NTVGMIVYAVLYFLATRGV--TYSWIWYVSYVVAYSTLAPWWLL-s.
A0A096XNJ3_9ALPC/2485-2837             .....................................ycavwvssi-------NFKP.ATFDSV.PEYDFRYIEDGAMKFFSKELPCVYNLYKDFPDWHKQR.FG..SvPTFSSSCPIIVGAND....-L.NTNV..VPNVASNVALS..-GRILVF.....................TYQT..L...FGHSK...LCFNDAYNSNMAKISAGdcerAAIFPSACTTLQGVGGR-QVYCFT.DGLYA...............GAKLYSDIMPHLRYYSDV..N.NY..VML..PEVIMRGfGFKITRFLEETYCRVGECAKSNAGICVSADEWYVY.DKDLG..-DSYVCSKDFKGLVWAFLSVFNANIGTVLLTGQLTFNAFIACAIVGICYTFVKFKRIFGDMSTLVLMVLAATFINSMSYLLTV-NFLFLMLYTCVYFISTRKV--HFPMVWDFMYVVAYVFVAPWYVIV..
A0A059VJE6_9ALPC/2539-2879             ...........................................vff---ALSFFDFS.TQVSSD.SDYDFKYIESGQLKTFDNPHSCVHNVFSNFDQWHDAK.FG.fT.PVNNPSCPIVVGVSD....E-.-ART..VPGIPAGVYLA..-GKTLVF.....................AINT..I...FGTSG...LCFDASGVAD-----KG....ACIFNSACTTLSGLGGTA-VYCYK.NGLVE...............GAKLYSELAPHSYYKMVD..G.NA..VSL..PEIISRGfGIRTIRTKAMTYCRVGQCVQSAEGVCFGADRFFVY.NAESG..-SDFVCGTGLFTLLMNVISVFSKTVPVTVLSGQILFNCIIAFAAVAVCFLFTKFKRMFGDMSVGVFTVGACTLLNNVSYIVTQ-NTLGMLGYATLYFLCTKGV--RYMWIWHLGFLISYILIAPWWVLM..
R1AB_CVH22/2507-2847                   .........................................ylcff---MPYFMYDI.--VSSF.EGYDFKYIENGQLKNFEAPLKCVRNVFENFEDWHYAK.FG.fT.PLNKQSCPIVVGVSE....--.IVNT..VAGIPSNVYLV..GKTLIFT.....................LQAA..F...-GNAG...VCYDIFGVTT-----PE....KCIFTSACTRLEGLGGN-NVYCYN.TALME...............GSLPYSSIQANAYYKYDN..G.NF..IKL..PEVIAQGfGFRTVRTIATKYCRVGECVESNAGVCFGFDKWFVN.DGRVA..-NGYVCGTGLWNLVFNILSMFSSSFSVAAMSGQILLNCALGAFAIFCCFLVTKFRRMFGDLSVGVCTVVVAVLLNNVSYIVTQ-NLVTMIAYAILYFFATRSL--RYAWIWCAAYLIAYISFAPWWLC-a.
#=GC seq_cons                          ................................................h.shhshp...shpss.phhsaKsI-NGVl+DlsssDsCFuNKassFssWapp+.aG..s.apNucuCPlVVulls....p..hGph..VPsVPusVhhs..stplLaF.....................lsps..F...uusus...lCYTspthlshpsa.sS....uCVhsotCThhpshsGp..sYCYc.sslhp...............suphYSsLhPHscYphhs..G.sh..I+h..PEllhpG.slRlV+ThuspYCRsGpCpcScsGlChuhsspaVh.sN-ah...sGsaCGssshsLltNlhsshspslsshslouullhssllAllllhshYhlhKF+RsFGDYotsVsssllshllN.lslhlst..shhsslYushYaYsThhhsschuhlhHlpallhasslsPhWls.h.
//
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