GenomeNet

Database: Pfam
Entry: CoV_nucleocap
LinkDB: CoV_nucleocap
Original site: CoV_nucleocap 
#=GF ID   CoV_nucleocap
#=GF AC   PF00937.21
#=GF DE   Coronavirus nucleocapsid
#=GF PI   Corona_nucleoca;
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Pfam-B_267 (release 3.0)
#=GF GA   30.00 30.00;
#=GF TC   230.70 131.00;
#=GF NC   26.70 26.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   31776274
#=GF RT   Nucleocapsid Protein Recruitment to Replication-Transcription
#=GF RT   Complexes Plays a Crucial Role in Coronaviral Life Cycle.
#=GF RA   Cong Y, Ulasli M, Schepers H, Mauthe M, V'kovski P, Kriegenburg
#=GF RA   F, Thiel V, de Haan CAM, Reggiori F;
#=GF RL   J Virol. 2020; [Epub ahead of print]
#=GF RN   [2]
#=GF RM   28720894
#=GF RT   Coronavirus nucleocapsid proteins assemble constitutively in
#=GF RT   high molecular oligomers.
#=GF RA   Cong Y, Kriegenburg F, de Haan CAM, Reggiori F;
#=GF RL   Sci Rep. 2017;7:5740.
#=GF RN   [3]
#=GF RM   25299332
#=GF RT   Nucleocapsid phosphorylation and RNA helicase DDX1 recruitment
#=GF RT   enables coronavirus transition from discontinuous to continuous
#=GF RT   transcription.
#=GF RA   Wu CH, Chen PJ, Yeh SH;
#=GF RL   Cell Host Microbe. 2014;16:462-472.
#=GF DR   INTERPRO; IPR001218;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Coronavirus (CoV) nucleocapsid (N) proteins have 3 highly
#=GF CC   conserved domains. The N-terminal domain (NTD) (N1b), the
#=GF CC   C-terminal domain (CTD)(N2b) and the N3 region. The N1b and N2b
#=GF CC   domains from SARS CoV, infectious bronchitis virus (IBV), human
#=GF CC   CoV 229E and mouse hepatic virus (MHV) display similar
#=GF CC   topological organisations. N proteins form dimers, which are
#=GF CC   asymmetrically arranged into octamers via their N2b domains.
#=GF CC   Domains N1b and N2b are linked by another domain N2a that
#=GF CC   contains an SR-rich region in which  phosphorylation of specific
#=GF CC   serine residues allows the N protein to associate with the RNA
#=GF CC   helicase DDX1 permitting template read-through, and enabling the
#=GF CC   transition from discontinuous transcription of subgenomic mRNAs
#=GF CC   (sgmRNAs) to continuous synthesis of longer sgmRNAs and genomic
#=GF CC   RNA (gRNA)[1], [2], [3]. It has been shown that N proteins
#=GF CC   interact with nonstructural protein 3 (NSP3) and thus are
#=GF CC   recruited to the replication-transcription complexes (RTCs) [1].
#=GF SQ   88
#=GS A0A0A7UXF2_9BETC/49-411   AC A0A0A7UXF2.1
#=GS A0A0D5Z9E4_9NIDO/162-318  AC A0A0D5Z9E4.1
#=GS NCAP_FIPV/23-355          AC P25909.1
#=GS NCAP_CVH22/12-375         AC P15130.2
#=GS H9BR21_9NIDO/1-328        AC H9BR21.1
#=GS NCAP_BCHK9/54-398         AC A3EXH0.1
#=GS A0A1L7HJ39_9ALPC/26-371   AC A0A1L7HJ39.1
#=GS C6GHF2_9ALPC/23-355       AC C6GHF2.1
#=GS Q19U29_CVHK1/52-403       AC Q19U29.1
#=GS A0A2H4MX36_9NIDO/25-387   AC A0A2H4MX36.1
#=GS H9TEX7_9ALPC/23-360       AC H9TEX7.1
#=GS NCAP_BCHK5/30-388         AC A3EXD7.1
#=GS NCAP_SARS2/21-391         AC P0DTC9.1
#=GS NCAP_SARS2/21-391         DR PDB; 7CDZ A; 4-131;
#=GS NCAP_SARS2/21-391         DR PDB; 7DE1 A; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6M3M C; 47-173;
#=GS NCAP_SARS2/21-391         DR PDB; 7LTU B; 217-222;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZQ A; 251-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7CDZ C; 5-130;
#=GS NCAP_SARS2/21-391         DR PDB; 7CE0 D; 1-110;
#=GS NCAP_SARS2/21-391         DR PDB; 7CE0 C; 1-110;
#=GS NCAP_SARS2/21-391         DR PDB; 6WKP D; 49-173;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZO A; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZO D; 255-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7DE1 B; 250-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7ACT A; 44-180;
#=GS NCAP_SARS2/21-391         DR PDB; 6ZCO A; 247-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7CDZ B; 4-130;
#=GS NCAP_SARS2/21-391         DR PDB; 7C22 C; 253-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6VYO A; 50-173;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI D; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6M3M D; 48-174;
#=GS NCAP_SARS2/21-391         DR PDB; 7KGQ C; 1-9;
#=GS NCAP_SARS2/21-391         DR PDB; 7CE0 A; 1-110;
#=GS NCAP_SARS2/21-391         DR PDB; 6VYO B; 49-173;
#=GS NCAP_SARS2/21-391         DR PDB; 7LTU A; 217-222;
#=GS NCAP_SARS2/21-391         DR PDB; 7CE0 B; 1-110;
#=GS NCAP_SARS2/21-391         DR PDB; 7CDZ D; 5-131;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI A; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7C22 D; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WKP B; 48-173;
#=GS NCAP_SARS2/21-391         DR PDB; 6VYO D; 49-173;
#=GS NCAP_SARS2/21-391         DR PDB; 6VYO C; 49-173;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZO C; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZO B; 254-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6M3M B; 48-174;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZQ D; 250-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6YUN A; 3-118;
#=GS NCAP_SARS2/21-391         DR PDB; 7ACS A; 4-140;
#=GS NCAP_SARS2/21-391         DR PDB; 6WKP C; 50-173;
#=GS NCAP_SARS2/21-391         DR PDB; 7KGO C; 1-9;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZQ C; 249-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI E; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7C22 B; 252-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WZQ B; 251-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7C22 A; 256-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI C; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6M3M A; 49-174;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI B; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 7KGR C; 1-9;
#=GS NCAP_SARS2/21-391         DR PDB; 6YI3 A; 4-140;
#=GS NCAP_SARS2/21-391         DR PDB; 6WJI F; 257-364;
#=GS NCAP_SARS2/21-391         DR PDB; 6YUN B; 3-118;
#=GS NCAP_SARS2/21-391         DR PDB; 6WKP A; 50-173;
#=GS A0A0U1WHB5_9ALPC/10-364   AC A0A0U1WHB5.1
#=GS A0A0S2ZX81_9GAMC/23-337   AC A0A0S2ZX81.1
#=GS A0A0D5Z9E4_9NIDO/1-177    AC A0A0D5Z9E4.1
#=GS E3W5J5_9ALPC/22-355       AC E3W5J5.1
#=GS A0A0U1WHF1_9ALPC/169-393  AC A0A0U1WHF1.1
#=GS A0A0U1WHF5_9ALPC/174-409  AC A0A0U1WHF5.1
#=GS Q6UZF2_SARS/39-392        AC Q6UZF2.1
#=GS NCAP_IBVB/23-365          AC P69596.1
#=GS NCAP_IBVB/23-365          DR PDB; 2BXX B; 29-160;
#=GS NCAP_IBVB/23-365          DR PDB; 2BTL A; 29-160;
#=GS NCAP_IBVB/23-365          DR PDB; 2BTL B; 29-160;
#=GS NCAP_IBVB/23-365          DR PDB; 2CA1 A; 218-326;
#=GS NCAP_IBVB/23-365          DR PDB; 2CA1 B; 225-326;
#=GS NCAP_IBVB/23-365          DR PDB; 2BXX A; 29-160;
#=GS S5YAG0_9ALPC/7-382        AC S5YAG0.1
#=GS R9QTA2_SARS/39-392        AC R9QTA2.1
#=GS NCAP_BC279/38-390         AC Q0Q468.1
#=GS Q5DIB8_SARS/39-392        AC Q5DIB8.1
#=GS A0A0U1WHF5_9ALPC/13-196   AC A0A0U1WHF5.1
#=GS A8JNZ6_9ALPC/13-358       AC A8JNZ6.1
#=GS B7U2M8_9BETC/53-422       AC B7U2M8.1
#=GS H9BR04_9NIDO/1-318        AC H9BR04.1
#=GS B1PHJ2_9ALPC/10-359       AC B1PHJ2.1
#=GS I7B990_9BETC/56-417       AC I7B990.1
#=GS A0A2Z4EVM9_9NIDO/54-399   AC A0A2Z4EVM9.1
#=GS A0A060A4F5_9NIDO/1-177    AC A0A060A4F5.1
#=GS NCAP_BC133/31-398         AC Q0Q4E6.1
#=GS T2BBK0_MERS/31-388        AC T2BBK0.1
#=GS R4WKE3_9BETC/51-422       AC R4WKE3.1
#=GS A0A0F6WGG4_9GAMC/23-339   AC A0A0F6WGG4.1
#=GS A0A0U1WJU3_9ALPC/9-395    AC A0A0U1WJU3.1
#=GS A0A240FW20_9ALPC/18-354   AC A0A240FW20.1
#=GS H9BR39_9NIDO/1-322        AC H9BR39.1
#=GS A0A023YAJ4_MERS/32-386    AC A0A023YAJ4.1
#=GS A0A023PNP8_9GAMC/23-339   AC A0A023PNP8.1
#=GS C6GHS6_9BETC/56-418       AC C6GHS6.1
#=GS B6VDY2_THCOV/1-176        AC B6VDY2.1
#=GS A0A0U1WHF9_9ALPC/13-360   AC A0A0U1WHF9.1
#=GS A0A125R5H7_9ALPC/23-355   AC A0A125R5H7.1
#=GS H9BR29_9NIDO/155-321      AC H9BR29.1
#=GS NCAP_CVM2/51-413          AC Q9PY96.1
#=GS I1VWF9_CVH22/12-366       AC I1VWF9.1
#=GS A3EXI6_BCHK9/53-401       AC A3EXI6.1
#=GS A0A172AZA9_9ALPC/17-359   AC A0A172AZA9.1
#=GS H6U5R4_9ALPC/7-178        AC H6U5R4.1
#=GS A0A4D6FTA0_9GAMC/30-381   AC A0A4D6FTA0.1
#=GS D9J207_9ALPC/25-357       AC D9J207.1
#=GS A0A1L2KGB9_9ALPC/156-387  AC A0A1L2KGB9.1
#=GS R9QTB4_SARS/38-390        AC R9QTB4.1
#=GS NCAP_BC512/8-364          AC Q0Q462.1
#=GS H6U5R4_9ALPC/168-404      AC H6U5R4.1
#=GS NCAP_BCHK4/31-397         AC A3EXA1.1
#=GS A3EXJ4_BCHK9/54-408       AC A3EXJ4.1
#=GS B6VDY2_THCOV/156-320      AC B6VDY2.1
#=GS A0A060A4F5_9NIDO/162-318  AC A0A060A4F5.1
#=GS K4K1V4_9ALPC/13-381       AC K4K1V4.1
#=GS A0A0U1WHI7_SARS/38-390    AC A0A0U1WHI7.1
#=GS A0A0U1UZD2_9ALPC/9-370    AC A0A0U1UZD2.1
#=GS Q6UZE8_SARS/39-392        AC Q6UZE8.1
#=GS A0A1L2KGB9_9ALPC/9-166    AC A0A1L2KGB9.1
#=GS A3EXH8_BCHK9/54-402       AC A3EXH8.1
#=GS C0KYU5_9BETC/56-417       AC C0KYU5.1
#=GS A0A0U1WHB1_9ALPC/10-364   AC A0A0U1WHB1.1
#=GS NCAP_CVMA5/55-416         AC P03416.2
#=GS NCAP_CVMA5/55-416         DR PDB; 3HD4 A; 64-194;
#=GS B7U2N9_9BETC/53-422       AC B7U2N9.1
#=GS A0A088DI26_9BETC/35-377   AC A0A088DI26.1
#=GS U5WLN3_SARS/39-392        AC U5WLN3.1
#=GS Q9J3E2_9BETC/55-417       AC Q9J3E2.1
#=GS H9BR29_9NIDO/1-174        AC H9BR29.1
#=GS A0A1B3Q5X0_9BETC/50-395   AC A0A1B3Q5X0.1
#=GS Q0Q099_9ALPC/9-395        AC Q0Q099.1
#=GS A0A0U1WJV4_9ALPC/9-394    AC A0A0U1WJV4.1
#=GS B2BW44_9GAMC/26-352       AC B2BW44.1
#=GS U5LQW6_9BETC/31-382       AC U5LQW6.1
#=GS NCAP_SARS/39-392          AC P59595.1
#=GS NCAP_SARS/39-392          DR PDB; 2CJR F; 252-363;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR H; 256-365;
#=GS NCAP_SARS/39-392          DR PDB; 2JW8 A; 248-365;
#=GS NCAP_SARS/39-392          DR PDB; 2OFZ A; 49-174;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR E; 256-365;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR D; 251-365;
#=GS NCAP_SARS/39-392          DR PDB; 2JW8 B; 248-365;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR C; 253-365;
#=GS NCAP_SARS/39-392          DR PDB; 6IEX C; 1-10;
#=GS NCAP_SARS/39-392          DR PDB; 1SSK A; 21-158;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR A; 251-365;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR B; 253-365;
#=GS NCAP_SARS/39-392          DR PDB; 2OG3 A; 50-174;
#=GS NCAP_SARS/39-392          DR PDB; 2GIB A; 270-366;
#=GS NCAP_SARS/39-392          DR PDB; 2CJR G; 255-363;
#=GS NCAP_SARS/39-392          DR PDB; 2GIB B; 274-369;
#=GS NCAP_CVP67/52-420         AC Q8BB23.1
#=GS A0A0K1YZZ7_SARS/38-391    AC A0A0K1YZZ7.1
#=GS A0A0U1WHF1_9ALPC/7-176    AC A0A0U1WHF1.1
#=GS NCAP_CVPPU/23-359         AC P04134.2
#=GS A0A1X9JRR1_9ALPC/26-370   AC A0A1X9JRR1.1
#=GS A0A0U1WHF4_9ALPC/9-371    AC A0A0U1WHF4.1
A0A0A7UXF2_9BETC/49-411              .......................q-ASGGNVVPFYSWFSGITQFQKGQEFGFEQGQGVPLTNGvPPSEEKGYWYRHNRksYRTADGQQRQLLPRWYFYYLGTGPYANKQYGSDI........DGVVWVASPNVDVRSPA..dVPDRDP..tSHQAEPTRFAPGtvLPKGYYVE.GSG.......RSAPSSRSSS..RASSR.............ASSV..GGSRSRNNSASRNNTS..............................---EVTP..DMADQIASLVLAKLNKE....................-SGKPVQVTKQTAKEIK..............QKILNKPRQKRTPNKQ..CTVQQCFGKRGPSQ...NFGGGSMLKLGTSDPQFPILAELAPTAGAFFFGSKLELAkvnnmsgaadePQKD.VY.........ELRYSGAIRFDSTLPGFETIMKVMNENLDAYqht..eegaQLLSPKFQRKQKKG............QVEKDNVSAATPK........................
A0A0D5Z9E4_9NIDO/162-318             ...................nsrgt---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------..-----.............----..----------------..............................-------..-----------------....................-GNQPRKRDQSAPAAVR..............-RKTQHQAPKRTLPKG..KTISQVFGNRSRTG..aNVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESN...........FQAG.AI.........TLTFSYSITVKEGSPDYERLKDALNTVVNQT.........YEPPTKPTKDKKPD............KQDQSAKPKQQK-kpkk....................
NCAP_FIPV/23-355                     .......................s-RGRKNNDIPLSFYNPITLEQGSKFWNLCPRDLVPKGIG.NKDQQIGYWNRQIR..YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKI........DGVFWVARDGAMNKPTT...LGTRGT...NNESKPLRFDGK..IPPQFQLE.VN-.......RSRNNSRSGS..QSRSV.............----..--SRNRSQSRGRHHSN.............................nQNNNVED..TIVAVLEKLGVTDKQRS....................-RSKPRERSDSKPRDTT..............PKNANKHTWKKTAGKG..-DVTTFYGARSSSA...NFGDSDLVANGNAAKCYPQIAECVPSVSSIIFGSQWSAE...........EAGD.QV.........KVTLTHTYYLPKDDAKTSQFLEQIDAYKRPS.........EVAKDQRQRRSRSK............SADKK--------peelsvt.................
NCAP_CVH22/12-375                    .......................p-QRGRQGRIPYSLYSPLLVDSE-QPWKVIPRNLVPINKK.DKNKLIGYWNVQKR..FRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERV........EGVVWVAVDGAKTEPTG...YGVRRK...NSEPEIPHFNQK..LPNGVTVV.EEP.......DSRAPSRSQS..RSQSR.............GRGE..SKPQSRNPSSDRNHNS..............................-QDDIMK..AVAAALKSLGFDKPQEKdkksaktgtpkpsrnqspasS-------QTSAKSLARsqss.....etkeqKHEMQKPRWKRQPNDDvtSNVTQCFGPRDLDH...NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSK...........ESGN.TV.........VLTFTTRVTVPKDHPHLGKFLEELNAFTREM.........QQHPLLNP------............-------------salefnpsqtspataepvr.....
H9BR21_9NIDO/1-328                   .......................m-AVPRVPRADASWFQPIKAQNKKITAPSFKKNGVPVNASlQAADQHGYWLRYNR..TKSGGG---SIPAAFSFYYTGTGPYATLKFGETP.......sDRITWVKGPSAVTTNKP..kVAKRDP..dKHPLLPLTFPPGdgVNTGL---.---.......RVDPF-QNRG..RTMDR.............----..-GPNQRSSSAPVDSGN..............................-------..-----------------....................--RNQRARSKSAPSRTN..............--PKTHQIPKRTLTKG..KTISQVFGKRTPGG..aNVGSADTEKAGFTDPRLMCLMRHTPGTQELLLAGHLDHD...........IQPE.GV.........YLKFTYTTQVKRDSAEYDRVIAALNNVVNQK.........YDADNLPSQKPKSTkpk......pkkE-----KKER---appkqqqkeqkqepqhesedtkki
NCAP_BCHK9/54-398                    .......................e-KPKAAPPQNVSWFAPLVQTGK-AELRFPRGEGVPVSQGvDSTYEHGYWLRTQR..SFQKGGKQVLANPRWYFYYTGTGRFGDLRFGTKN........PDIVWVGQEGANINRLG..dMGTRNP..sNDGAIPVQLAGG..IPKGFYAE.GRG.......-SRGNSRSSS..RNSSRa...........sSRGN..SRASSRGASPGRPAAN.............................pSTEPWMA..YLVQKLERLESQVSGTK...................pATKNPVQVTKNEAAANA..............----KKLRHKRTAHKG..SGVTVNYGRRGPGDlegNFGDREMIKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTR...........DEDD.AL.........WLHYKGAIKLPKDDPNYEQWTKILAENLNAY.........KDFPPTEPKKDKKK............KEETAQD------tvife...................
A0A1L7HJ39_9ALPC/26-371              .......................s-QNRTNASNPLSWFTSIIDESNGNFISLMPHSGVPTGMG.TAAQQCGYWYRAPT.vYQVRRGKRVPLPPVWYFYFLGTGPHANAAYGTAM........DGVFWVKTKNGQIDPKStkaLGVRDS...GTDPRRANIPN-..LPEGLRVN.VPN.......ASRPQSRAQS..QTRSQ.............NTSR..ASSVSRNGSRAPSVDR..............................TKEDLKA..VVSQLLAEMGISKNSKQ....................TQNQKKQKGSTPAATPH..............PNQDGKPVWKKKPNKE..ETVAQCFGPRSDNK...NFGDAEFLRLGVDDPRFKTASYYAPGAAASLFDSMVTVS...........DGPDgKK.........RVTFHTTIEVDPTKPGFEVFLAQIDAFKKPA.........-TFQQTQNFWENQA............STQNN--------iseyfrgtt...............
C6GHF2_9ALPC/23-355                  .......................s-RGRKNNNIPLSFYNPITLEQGSKFWNVCPRDFVPKGIG.NKDQQIGYWNRQAR..FRIVKGQRKELPXRWFFYYLGTGPHADAKFKDKI........DGVFWVAKDGAMNKPTT...LGTRGT...NNESKPLKFDGK..IPPQFQLE.VN-.......RSRNNSRSGT..PSRST.............----..--SRNRSQSRGRQQSN.............................nQGNNVED..TIVAVLQKLGVTDKQRS....................-RSKSLERSQSKSRDTT..............PKNANKHIWKKTAGKG..-DVSNFYGARSASA...NFGDSDLVANGNAAKCYPQIAECVPSVSSMLFGSQWSAE...........EAGD.QV.........KITLTHIYYLPKDDAKTSQFLEQIDAYKRPS.........QVAKDQRQRKSRSK............SADKK--------peelsvt.................
Q19U29_CVHK1/52-403                  ....................tqpq----GNTIPHYSWFSGITQFQKGRDFKFSDGQGVPIAFGvPPSEAKGYWYRHSRrsFKTADGQQKQLLPRWYFYYLGTGPYANASYGESL........EGVFWVANHQADTSTPS..dVSSRDP..tTQEAIPTRFPPGtiLPQGYYVE.GSG.......RSASNSRPGS..RSQSR.............-GPN..NRSLSRSNSNFRHSDS..............................---IVKP..DMADEIANLVLAKLGKE....................--SKPQQVTKQNAKEIR..............HKILTKPRQKRTPNKH..CNVQQCFGKRGPSQ...NFGNAEMLKLGTNDPQFPILAELAPTPGAFFFGSKLDLV...........KRDS.EAdspv.kdvfELHYSGSIRFDSTLPGFETIMKVLEENLNAY.........VNSNQN-TDSDSLS............SKPQR--------krgvkqlpeq..............
A0A2H4MX36_9NIDO/25-387              ......................rs-KSKDRKTMPLSWFNPLEFEVGKDLGDLINTNSVPIGKG.TKQEQHGYWNIQTR..FRVNKGKRVDLQPRAFFYYTGTGPHKILAFGEQQ........EGVVWVATKEADHNPVR...FGDRPE...STPAMEVKIRQG.kQPLGVKLL.NDSk.....eEVVRQSRARS..RSRSQ.............SRSR..DTSQKRVTFSDQQPKG..............................DQYVTKN..DLSNLLSKLLDEKLNSNpkpq...........rqprsRSNSSTRNS-------Qket.......qavqKDQMSKHWWKRIPTKD..EGIEQCFGQRSDTV...NFGTKYMVDQGTG-GNFPQLATLLPTPAAMLYGSHVQITp.........gMSPD.KE.........FIVYTCGIEVDKNDPIYKEFKKGVNAFKDDT.........TWLSGNTIAKAKN-............-------------lnttstpsqtvqsvsesnasv...
H9TEX7_9ALPC/23-360                  .......................s-RGRKNNNIPLSFFDPITLQQGAKFWNLCPRDFVPKGIG.NKDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVFWVAKDGAMNKPTT...LGNRGA...NNESKALKFDGK..VPSEFQLE.VNQ......sRDNSRSRSQS..RSQSR.............--NR..SQSRGRQQSNNKKDDS..............................----VEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKERSNSKTRDTT..............PKNENKHTWKRTAGKG..-DVTKFYGARSSSA...NFGDSDLVANGSGAKHYPQLAECVPSVSSILFGSYWTAK...........EDGD.QI.........EVTFTHKYHLPKDDPKTGQFLQQINAYARPS.........EVAKEQRQRKARSK............SAERSEQE-----vvpda...................
NCAP_BCHK5/30-388                    .......................t-KPRPAPNTTVSWFTGLTQHGK-QPLAFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVK........DGIIWVHENGATDAPSV...FGTRNP..aNDPAIVTQFAPGttLPKNFHIE.GTG......gNSQSSSRASS..RSSSRs..........ssRNGR..SNNSSRNASPAPHGVGdv.........................vgaG---TLS..VLLDLQKRLADLEAGKG....................-NKQPKVITKKDAQAAK..............----QKMRHKRVATKG..YNVVQAFGMRGPGPlqsNFGDMQYNKLGTEDPRWPQIAELAPSASAFMSTSQFKVT...........HQSN.DEnge...pvyFLSYSGAIKLDPKNPNYNKWMEILDANIDAY.........KSFPKKERKQKPSG............DDAATAPA-----tsqmedvpe...............
NCAP_SARS2/21-391                    sdstgsnqngersgarskqrrpqg-----LPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNsSPDDQIGYYRRATR.rIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANK........DGIIWVATEGALNTPKD..hIGTRNP..aNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRNS.............SRNS..TPGSSRGTSPARMAGN.............................gGDAALAL..LLLDRLNQLESKMSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKA..YNVTQAFGRRGPEQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYTGAIKLDDKDPNFKDQVILLNKHIDAY.........KTFPPTEPKKDKKK............KADETQAL-----pqrqkkqqt...............
#=GR NCAP_SARS2/21-391         SS    XXXXXXXXXXXXXXXXXXXXXXXX-----XSXXXBSSB--EEESSS-S----STT------TTS-GGGGEEEEEEE--.EEESTTSSEEE---EEEEEETT-STTTTS-TT--B........TTEEEEEBTTS-SS--T..TTCHB-T..TTS--B----CTT--B-TTEEET.TSX......SXXXXXXXXXX..XXXXX.............XXXX..XXXXXXXXXXXXXXXX.............................XXXXEEEE..XXXXSXXXXXXXXXXXX....................XXXXXXXXXXXXHHHHH..............----TSXGGGXXXBTT..BXHHHHHXXBXSSTTSBXBXXHHHHHHGGGSTTHHHHHTTSXXHHHHHHHSEEEEE...........EETT.EE.........EEEEEEEEEEXTTSTTHHHHHHHHHHHBTGG.........GGXXXXXXXXXXXX............XXXXXXXX-----XXXXXXXXX...............
A0A0U1WHB5_9ALPC/10-364              .......................n-SRGRSGRIPLSYYAPVRVADDKLFLKSMPGNGVPKGMG.GKAEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTN...LGTRNR...NQQLRIPEFDFT..LPDSLEVV.NSD.......-SRPASRSNS..RSQSKs...........nNQSR..SNSKARDQSGTRTPKNasqnq....................kpkknQQEDLVA..AVREALKGLGIQQSRSS...................sGKSTPARSKSPARPSNK..............-KQLDKPEWKRVPNRT..ENATTCFGQRSVER...NCGSASVVGMGVEAPNFPQIAELIPTQAALFFGSRVSTK...........EVGD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKPKAKPEe..........vPQLNPAAPVFTP-p.......................
A0A0S2ZX81_9GAMC/23-337              .................kppkvgs-------SGNASWFQPIKAKKLNSPQPKFEGSGVPENDNlKSSQQHGYWRRQHR..FKPSKGGRKPVPDAWYFYYTGTGPAADLNWGDSQ........DGIVWVAAKGADINSRS..nQGTRDP..dKFEQYPLRFSDG.gPDGNFRWD.FI-.......---PLNRGRS.gRSTAA............sSAAS..SRAPSREGSRGRRSGA..............................-EDDLIA..RAAKII----QDQQK--....................---KGARITKAKADEMA..............----HRRYCKRTIPPG..YKVDQVFGPRTKGKe.gNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSKVTPK...........LQPD.GL.........HLKFEFTTVVPRGDPQFDNYVKICDECVDGV.........GTRPKD--------............-------------depr....................
A0A0D5Z9E4_9NIDO/1-177               .....................maa---PVVPTTDASWFQVLKAQNKKSTHPQFRGNGVPLNSAiKPVENHGYWLRYTR..QKPGGT---PIPPSYAFYYTGTGPRGNLKYGELPpnd.tpatTRVTWVKGSGADTSIKP..hVAKRNPnnpKHQLLPLRFPTGdgPAQGFRVDpFNA.......RGRPQERGSG.pRSQSV.............NSRG..TGNQPRKRDQS-----..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------a.......................
E3W5J5_9ALPC/22-355                  ......................ns-RGRKNNDIPLSFFNPITLESGSKFWSVCPRDFVPKGIG.NKDQQIGYWNRQVR..YRIVKGQRKELPERWFFYFSGTGPHADAKFKDKI........DGVFWVARDGAMNKPTS...LGTRGT...NHESKPLRFDGK..IPPQFQLE.AN-.......RSRNNSRSGS..QSRSA.............----..--SKNRSQSRGRQQSN.............................nQNTNVED..TIVAVLQKLGVTDKQRS....................-RSKSRERSSSNARDTT..............PKNANKHTWKKTAGKG..-DVTNFYGARSASA...NFGDSDLVANGNAAKCYPQIAECVPSVSSMLFGSQWSAE...........EAGD.QV.........KVTLTHTYYLPKDDAKTSQFLEQIDAYKRPS.........QVAKEQRQRKPRSK............SADKR--------peelsvt.................
A0A0U1WHF1_9ALPC/169-393             ......................nn---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.--T.......NSRDNSNNRG..KSQSR.............NSSR..NRGQQRNNNQQRQGTGaa..........................gnGTADLAA..AIVLALEKAGLTRETEKapkk...........esannNKKSESRASSPAPAQSK..............KDQLGKVMWKRNPDPS..FNVTQCFGPRSVYQ...NFGDEDAIKNGVKAKHFPSWAELTPTPAALLFGSEVITV...........EDGD.DI.........VIQYNYQMRVPKTMAALQTFLPQVGAYANGD.........NESESGDQPGASAA............AAAAPEPPALPP-k.......................
A0A0U1WHF5_9ALPC/174-409             .......................r---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......-AQSNNRSQS..RGRQNqnqnnqptgdggsNGQR..NQPRNRSNSRNRSGNQgr.........................nggSQQDLVA..AVREALAGMGFKPNTSG...................sGRNTPVKVPKGDKPLNKpt.........kapASQVEKPVWKRTPHSQ..ENVEVCFGPRDTYQ...NFGDSQLVRLGVDYPHYPQIGELIPSQAALLFGSEITAH...........ERGD.NI.........QLTYIYKMEVPKDHKSLAAFLPHIGAYADSTe......dvTLPPALPPKQQRLR............RSASTEVL-----adtts...................
Q6UZF2_SARS/39-392                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
NCAP_IBVB/23-365                     .................kppkvgs-------SGNASWFQAIKAKKLNTPPPKFEGSGVPDNENiKPSQQHGYWRRQAR..FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQ........DGIVWVAAKGADTKSRS..nQGTRDP..dKFDQYPLRFSDG.gPDGNFRWD.---.......-FIPLNRGRS.gRSTAA............sSAAA..SRAPSREGSRGRRSDS..............................-GDDLIA..RAAKI----IQDQQKK-....................----GSRITKAKADEMA..............----HRRYCKRTIPPN..YRVDQVFGPRTKGKe.gNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPK...........LQLD.GL.........HLRFEFTTVVPCDDPQFDNYVKICDQCVDGV.........GTRPKDDEPKPKSR............SSSRPATRGNS--paprqqrpkkekk...........
#=GR NCAP_IBVB/23-365          SS    .................XXXXXX---------S-B-SB--EEESSSS-----EES------TTS-GGG-EEEEEEEEE..EEEESSSEEEEEEEEEEEETT-STTTTS-TT---........TTEEEEE-TT--TT---..S---B-T..TT---B----TT-.EE-TTEE--.---.......-----XXXXX.XXXXXX............XXXXX..XXXXXXXXXXXXXXXX..............................-XXXXXX..XXXXX----XXXXXXX-....................----XXXXXXXXHHHHH..............----SSXGGGXXXXTT..XXCHHCCXSXXSSST.TXBXXHHHHHHGGGSHHHHHHCTTSXXHHHHHHCSEEEEE...........EETT.EE.........EEEEEEEEEEXTTSTTHHHHHHHHHHHBXXX.........XXXXXXXXXXXXXX............XXXXXXXXXXX--XXXXXXXXXXXXX...........
S5YAG0_9ALPC/7-382                   .......................a-KNNRRGRMEYSYFAPLIINSDQPIWKVLPNNAVPVGKG.GKDEQIGYWNEQPR..WRMRKGQRVDVASKWHFYYLGTGPHSEEQYRKRI........DGVYWVAVNGAKTSPTG...LGTRSA...KTKPLELKFNTK..IPKEVEFV.EPTs....pgSSRANSRSQS..RGGSKsr........nnsPRRG..NQSKSRNSSKNRGGDNrsrs.....................ssgtrDQDAIVA..AVKAALLGLGLGTDSNSgasgk.........askansGTSTPKPKPAATPKSPSt............pKSQLERPEWKRVPDSD..CSVEQCFGPRGGFK...NFGSADFVQYGVAAKGYPQAAALTPTSAALLFGGNVQVQ...........ELSD.DI.........EITYTYKMTVPKSDKNLEVFLSNVNAYKEAK.........PQREPKKKKDRSSR...........pP------------tpapsapvasgnaep.........
R9QTA2_SARS/39-392                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVAIEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
NCAP_BC279/38-390                    .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKKLSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................sGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKS..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKYWPQIAQFAPSASAFFGMSRIGME...........VTPL.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KAFPPTEPKKDKKK............KTDEAQP------lpqrkkqpt...............
Q5DIB8_SARS/39-392                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SGNS..TPGSSRGNSPARMASG.............................gGKTALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
A0A0U1WHF5_9ALPC/13-196              .......................a-ARGRSGRVPFSFYMPVINNSSQPFYKVMPQNAVPKGQG.NKDQQIGYWNEQVR..WRMVKGTRKDLPSKWHFYYLGTGPHADLKFRQRQ........QGVFWVAKEGAKAEPTG...LGTRGR...NAELTTPIFNPG..LPDSIEIV.DQY.......-SRPNSRASS..RARSQsn........dqgNRSR..SQSNNRAQSNNRSQSR..............................G------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------rqnqnqnnqpt.............
A8JNZ6_9ALPC/13-358                  ......................ae--SRGRKRIPLSLFAPLRVTDGKNFWNVMPRNGVPTGRG.NPDQQIGYWVEQKR..WRMQKGQRKDQPSNWHFYYLGTGPHADAPFRKRI........QGVHWVAVDGAKTSPTG...LGVRNR...NKEPATPQFGFQ..LPADVTVV.EAT.......-SRSASRSQS..RSRNQ.............----..SQSRSGAQTPRVQQSS..............................QAVDIVA..AVKQALADLGIASSQSKs.................qsGKNTPKPRSRAVSPAPApk..........paRKQMDKPEWKRVPNSE..EDVRKCFGPRSASR...NFGDSDLVQHGVEAKHFPTIAELLPTQAALAFGSEITTK...........EAGD.FV.........EVTYHYVMKVSKTDKNLPRFLEQVAAYSKPS.........QIRRSQSQQDLN--............-------------vdapaftpappatpvsr.......
B7U2M8_9BETC/53-422                  .....................qpp---GGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADVNTPA..dILDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS..RASSR.............-ASS..AGSRSRANSGNRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEIR..............QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnldePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDGMMNMSPKPQ............RQRGQK-------ngqgendnisvaapksrvqqnk..
H9BR04_9NIDO/1-318                   .......................m-ATPSVPTTDASWFQVLKAQNKKATHPQFRGNGVPLNSAiKPAENHGYWLRYTR..QKPGGT---QIPPSYAFYYTGTGPRGNLKYGELPpnd.tqatTRVTWVKGPGADTSIKP..hVAKRNPnnpKHQLLPLRFPTGdgPAQGF---.---.......RVDPFN-ARG..RPQER.............----..-GSGPRSQSANPRGTN..............................-------..-----------------....................--NQPRKRDQSAPAAVR..............-RKTQHQAPKRTLPKG..KTISQVFGNRSRTG..aNVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESN...........FQAG.AI.........TLTFSYSITVKEGSPDYERLKDALNTVVNQT.........YEPPTKPTKDKKPE............KQDQSAKPKQQK-kpkk....................
B1PHJ2_9ALPC/10-359                  .......................n-SRGRSGRTPLSYYAPLRVADDKLFLKSMPGNGVPKGMG.EKSEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTK...LGTRNR...NQQLRIPTFDFT..LPDSLEIV.NSD.......-SRPASRSNS..RSQSKs...........aNQSR..SNSQVREQSGNRTPKNasq........................kknQQEDLVA..AVREALKGLGFQQSRSS...................sGRSTPSRAKSPARQSKK..............--QLDKPEWKRVPNRT..ENATTCFGQRSVEK...NCGSASVLAMGVETPNFPRIAELIPTQAALFFGSRVSTK...........ENSD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKQKAKTEe..........tPQLNPTAPAFT--hp......................
I7B990_9BETC/56-417                  ...................qpnsg-----SVVPHYSWFSGITQFQKGKEFQFAQGQGVPIANGiPASQQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDI........EGVVWVASQQADTRTSA..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RPQSR.............----..-GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELV...........KKNS.GGadgptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqnq..dggaDVVSPKPQRKRGTK............QKAQKD-------evdnvsvakpk.............
A0A2Z4EVM9_9NIDO/54-399              .......................e-KPRAAPAQNVSWFLPIVQTGK-QDLRFARGEGVPVSQGvDITYQHGYWLRRQR..TFNKGGKQVQANPRWFFYYTGTGPYEGLRYGSRN........NDIIWVGNEGANVNRLG..dMGTRNP..aNDAGIPVQLAEG..IPKGFYAE.GRN.......-SRGNSRNSS..RSSSRg...........sSNAN..SRNQSRSNSPGRGSAPp............................sGGEPWMA..YLIQKLENLEQRVDGKK....................SDKQPVKVTKNVASENA..............----KKLRHKRTAHKG..SNATQNYGRRGPGNlegNFGDQEFLKLGTDDPRFPVVAQMAPNTSSFVFMSHFTPR...........YEAD.AL.........WLDYTGSIKLPRDDPNFPQWEKLLAENIDAY.........KSFPPPKPKSDKKK............KSDKSDS------aagpse..................
A0A060A4F5_9NIDO/1-177               .....................maa---PVVPTTDASWFQVLKAQNKKATHPQFRGNGVPLNSAiKPVENHGYWLRYTR..QKPGGT---PIPPSYAFYYTGTGPRGNLKYGELPpnd.tpatTRVTWVKGSGADTSIKP..hVAKRNPnnpKHQLLPLRFPTGdgPAQGFRVDpFNA.......RGRPQERGSG.pRSQSV.............NSRG..TGNQPRKRDQS-----..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------a.......................
NCAP_BC133/31-398                    .......................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS..RSNSR.............-GGR..STSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK..............----NKMRHKRVATKG..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLEANIDAY.........KTFPKKERKPKTTEdgavvasssasqM------------edvdakpqrkpk............
T2BBK0_MERS/31-388                   .......................p-KPRAAPNNTVSWYTGLTQHGK-VPLTFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVK........DGIVWVHEHGATDAPST...FGTRNP..nNDSAIVTQFAPGtkLPKNFHIE.GTGgnsqsssRASSVSRNSS..RSSSQ.............-GSR..SGNSTRGTSPGPSGIG..............................-AVGGDL..LYLDLLNRLQALESGKV....................KQSQPKVITKKDAAAAK..............----NKMRHKRTSTKS..FNMVQAFGLRGPGDlqgNFGDLQLNKLGTEDPRWPQIAELAPTASAFMGMSQFKLT...........HQNN.DDhgn...pvyFLRYSGAIKLDPKNPNYNKWLELLEQNIDAY.........KTFPKKEKKQKAPK............EESTDQMS-----eppkeqrv................
R4WKE3_9BETC/51-422                  ..................sqpagg-----NVVPYYSWFSGITQFQKGKEFQFAEGQGVPIAPGiPSTEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKVQYGTNI........DGVFWVANKQADVNTPA..dVVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSVSNSRSTS..RASSR.............-ASS..AGSRSRANSGTRTSTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR..............QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGAEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgsfdePQKD.VY.........ELRYNGAIRFDSTLPGFETIMKVLNENLNAY.........QQQDDGTNMSPKPQ............RQRGQK-------kggenedvsvaapksrvqqnksr.
A0A0F6WGG4_9GAMC/23-339              .................kppkvgs-------SGNASWFQSLKAKKLNSPPPTFEGSGVPDNENlKSSQQHGYWRRQAR..YKPGKGGRKPVPDAWYFYYTGTGPFADLKWGQPH........DDIVWVAVDGADVDVKS..gQGTRDP..dKFDQFPLRFAEG.gPDDNFRWD.FIPvg..grgRSGRSSVATS..RESSR.............----..--PGSREGSRGRRQMG..............................PNEDLIA..RAARIIEE------QQ-....................--KRGGRITKAKANEMA..............----ERRYCKRTLAPG..KTVDQVFGTRQKGRe.rNFGDDRMVEEGIRDGRTTAMLNLVPSSHAMLFGSNVQAK...........LQPD.GL.........HVTFSFTTVVPRDDPQFDNYRQICDECVDGV.........GTRPKDE-------............-------------pkp.....................
A0A0U1WJU3_9ALPC/9-395               .......................e-PRGRSGRVPLSLFAPLRTTDGTPFFRAMPQNGVPKGFG.NKDQQVGYWNEQVR..WRMKKGQRQNLPSNWHFYYHGTGPHGDAKYREKI........AGVYWVAKQGTKVAPTD...LPTRKR...NQPTIDPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS..RSQSS.............----..GGSKSRANSQSRDNSNqqktpkgstnnsrsnsqersqkskkgkggsNQDDLVA..AVRQALMGLGFQPQGNSgknggk........ksapssGKSTPKDSRSKSPARPQs............tKKQLDKPEWKRVPNKS..ESVTACFGPRDVSR...NFGTKGLVAEGVEYSHFPQIAELLPTQAALAFGSRVEVK...........DFKD.EV.........EIKFHYKMNVPKENKNLQVFLEQVDAYLDPS.........REDKPKEQRKPKEKrke......dtpAQL----------npaapvftpp..............
A0A240FW20_9ALPC/18-354              .......................t-KNGSKVEVELSAWDPIIIQNNKNIQDVLPRTSVPK--GlPSGHEIGYWYKGPE.rYRFTRGEKVPLDPKWYFYPLGHGPAANKKWNSKV........EGVFWVARDGASIEKVP..dFEPRKK...GAEAKRVRLPGK..APANVYFT.TTS.......----ASRSQS..RDNSR.............AASR..SGSKSRIQSRSPSAER..............................GHVDIKL..AVLEALKDLGIGQDTKKkssk...........saaasGNNTPKQESSPKVQRKQ..............---IERLRHKRVPTGK..ENITVCFGPRGPEQ...NFGSDEIVNGGAQGKKVAQLLENVPGPSALLFGGKVEQI...........GKANgKV.........AVQYTYVAELD-DNEEVKRFLDLIDAYKKPT.........TANSI---------............-------------nsvlnpqatafapp..........
H9BR39_9NIDO/1-322                   .......................m-ATPTVPVADASWFQPLKAQNKKNTTPSFKGDGVPINTSlDHKAAHGYWLRFNR..QKPGGA---QLPPSFAFYYTGTGPRGNLKYGEFPpne.skgnSRITWVHVKDADTSIKP..kVAKRNPqnpKHALLPLRFPPGdgPAQGF---.---.......RIDPFQPQRG..RGMER.............----..-GPTQRSQSANPRQND..............................-------..-----------------....................--AGNRRRAASAPGTNR..............SKTHTHAIPKRTLQKG..KTISAVFGKRSPAG..sNVGSADTEKAGMADGRIMALARQVPGVQEMLFAGHLSHQ...........FQAD.AV.........TLTWTYSITIKSDSSDYDRIKQALDTVVDQT.........YEAPIKEKKQPAKQq..........pKQDKPKPQ-----rspkkqdk................
A0A023YAJ4_MERS/32-386               .......................p-KPRPAPNNTVSWYTGLTQHGK-VPLSFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-TKQLAPRWFFYYTGTGPEANLPFRAVK........DGIVWVHEEGATDAPSS...FGTRNP..nNDPAIVTQFAPGtrLPKNFHIE.GTGgnsqsssRASSASRGSS..RSSSR.............-GAR..SGNSSRSASPGPAGIGa............................vGGDASSI..LYLSLLKRLEDLEAGKS....................-KSAPKVVTKKDAAAAK..............----NKMRHKRVATKS..FNMVQAFGRRGPGDlqgNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLT...........HQSN.DAdgs...pvyFLRYSGAIKLDPKNPNYQKWMELLEANIDAY.........KSFPVKEKKQKADD............NKQDST-------edsgd...................
A0A023PNP8_9GAMC/23-339              .................kppkvgs-------SGNASWFQALKAKKLNSPPPKFEGSGVPDNENlKLSQQHGYWRRQAR..YKPGKGGRKSVPDAWYFYYTGTGPAADLNWGDSQ........DGIVWVSAKGADTKSRS..nQGTRDP..dKFDQYPLRFSDG.gPDGNFRWD.F--.......--IPINRGRS.gRSTAA............sSAAS..SRAPSRDGSRGRRSGA..............................-EDDLIA..RAAKII----QDQQKK-....................----GSRITKAKADEMA..............----HRRYCKRTIPPG..YKVDQVFGPRTKGKe.gNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPK...........LQPD.GL.........HLRFEFTTVVSRDDPQFDNYVKICDQCVDGV.........GTRPKDD-------............-------------eprpk...................
C6GHS6_9BETC/56-418                  ...................qpntg-----SVVPHYSWFSGITQFQKGKEFQFAGGQGVPIANGiPSSEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASFGDSI........EGVFWVANSQADTNTSA..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RSQSR.............----..-GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGPEMLKLGTSDPQFPILAELAPTPGAFFFGSKLELV...........KKNSgGVdept.kdvyELHYSGAVRFDSTLSGFETIMKVLNENLNAYqnq..aggvDVVSPKPQRKRGTK............QTAQK--------eeldsisvaqpks...........
B6VDY2_THCOV/1-176                   ....................msap----VVPTTDASWFQVLKAQNKKAIHPQFRGDGVPLNSAiKPQENHGYWLRYNR..QKPGGA---AIPPSYAFYYTGTGPRGNLKFGEYPpnd.skdtSRITWVKAKGADTSIKP..hVAKRNPnnpKHALLPLRFPSGdgPAAGFRVDpFNT.......RGRQLERAPG.pRSMSM.............DTRP..AANQPRKRDQ------..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------s.......................
A0A0U1WHF9_9ALPC/13-360              .......................e-SRGRKPRIPLSLFAPLRVTSDKNFWNVMPRNGVPTGKG.NSEQQIGYWVEQKR..WRMQKGQRKDQPSNWHFYYLGTGPHAEAPFRKRI........QGVHWVAIDGAKTNPTG...LGVRNR...NREPITPQFGFQ..LPSDLMIV.EST.......-SRSASRSQS..RSRNQ.............----..SQSRSGQQTPRFQQQS..............................QSVDIVA..AVKQALADLGISGTQNKp.................qsGRNTPKQKSRAVSPAPSpk..........qtRKQMDKPEWKRVPNSD..EDVKKCFGPRSVAR...NFGDSDLIQNGVEAKHFPTIAELLPTQAAIAFGSEITTK...........EAGD.FV.........EITYHYVMKVPKTDKNLPRFLEQVSAYSKPS.........QIRRSQSQQDL---............-------------nvdalvftpappttptvqsp....
A0A125R5H7_9ALPC/23-355              .......................s-RGRKNNDIPFSYYNPITLEPGSKFWNVCPRDFVPKGIG.NKDQQIGYWNRQFR..YRIVKGQRKELPERWFFYFLGTGPHADAKFKDKI........DGVFWVARDGAMNRPTT...LGTRGT...NNESKPLKFDGK..IPPQFQLE.VN-.......RSRNNSRSGS..QSRSV.............----..--SRNRSQSRGRQQSN.............................nQNTNVED..TIVAVLQKLGVNTESNQ....................-RSRSKSRTRGESRDTT..............PKNANKHTWKKTAGKG..-DVTNFYGARSASA...NFGDSDLVANGNAAKCYPQIAECVPSVSSILFGSQWSAE...........EDGE.QV.........KVTLTHTYHLPKDDAKTSQFLEQIDAYKRPS.........AVAKDQRARKSRSK............SADKK--------peelsvt.................
H9BR29_9NIDO/155-321                 ....................drra---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------..-----.............----..----------------..............................-------..--------------QSA....................EPQRPKQRERSRSAPSR..............AAPKQHAIPKRVLLKG..KTISGTFGKRSPAK..aNVGSPDTEKTGLGDPRLMALMRFVPGTQELLFAGHLKHK...........MQPE.GV.........QLTFTYDITVKRDNKDFDRIVEALNSVVDMVyepegeirkDQQSKKDTQPKKKA............EKKTPTNPQKQP-d.......................
NCAP_CVM2/51-413                     ..................tqpnag-----SVVPHYSWFSGITQFQKGKEFQFAQGQGVPIASGiPASEQKGYWYRHNRrsFKTPDGQHKQLLPRWYFYYLGTGPHAGAEYGDDI........EGVVWVASQQADTKTTA..dVVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RSQSR.............----..-GPNNRARSSSNQRQP..............................-ASAVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILTKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAIRFDSTLPGFETIMKVLTENLNAYqdq..agsvDLVSPKPPRRGRRQ............A------------qekkdevdnvsvakpk........
I1VWF9_CVH22/12-366                  .......................p-QRGRQGRIPYSLYSPLLVDSE-QPWKVIPRNLVPTNKK.DKSKLIGYWNIQKR..FRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERI........EGVVWVAVDGAKTEPTG...YGVRRK...NLDPEEPRFSQS..LPNGVTVV.EEP.......DSRAPSRSQS..KSQSR.............GRGE..FKPQSRNSSSAS----..............................-QDDIIK..AVAAALKSLGFEKEKEAvkkgtpkps.rnqspassqtR---------------AksparpqnsetkeqKHEMQKPRWKRQPNDDvtSNVTQCFGPRDPYH...NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIDSK...........ESGN.NV.........VLTYTTRVTVPKDHPHLGKFLEELNAFTKPS.........QGDMQQHP------............-------------llnpsaqefnpsqtspgt......
A3EXI6_BCHK9/53-401                  .......................e-KPKAAPPQNVSWFAPLVQTGK-QDLRFPRGQGVPISQGvDPIYNHGYWVRTQR..TFQKGGKPVSANPRWYFYYTGTGRYGDMRYGTKN........PDIYWVGEEGANVNRVG..dMGTRNP..nNDAAISVQLADG..IPKGFYAE.GRN.......-SRGNSRNSS..RNSSR.............ASSRggSRPGSRGASPGRATPSg............................sGAEPWMA..YLVSKLETLEAKVNGTK...................sETKAPVQVTKSAAAENA..............----KKLRHKRTPHKG..SGVTMNYGRRGPGDlegNFGDQTMLKLGVDDPRFPAVAQMAPNVASFIFMSHLSTR...........EEND.AL.........WLQYKGAIKLPKDDPNYEQWTKLLAENLNAY.........KDFPPPEPKKDKKK............KEE----------issdtvvfedas............
A0A172AZA9_9ALPC/17-359              ...............sqkrgrsrs-RSRRNADIPLSYFNPITHEGKKSFWTVAPKDFVPIGKG.NKDQQVGYWNRQQR..YRIQRGQKVELPDRWFFYYLGTGPHSNAKFKDRI........DGVFWVGKNGAKTVPTG...LGTRGT...NQQSLDLKFDGN..VPNDFKLE.QNV.......GSRNNSRSRS..RGRSK.............----..--SNNRSNNNNSNSGD..............................----IAT..AVAAALAQMGFAPKDTQ...................kNKSRSKSRDRSKSRERP.............tPNNENKHSWKKTPGKG..-EVESMFGKRRPEA...NFGTSDLVNAGSSDKHYPQLAELVPGSAALLFGGKWTTK...........EESDgDV.........VVTVKYSYTLPKGDK-TTAFLKQIDAYTKPS.........DIAKEQRSRSKSRE............RPQTPL-------psnsaeten...............
H6U5R4_9ALPC/7-178                   ......................qd---RGRKRVPLSLYAPLRVTNDKPLSKVLANNAVPTNKG.NKDQQIGYWNEQIR..WRMRRGERIEQPSNWHFYYLGTGPHADLRYRTRT........EGVFWVAKEGAKTEPTN...LGVRKA...SEKPIIPNFSQQ..LPSVVEIV.EPN.......-TPPTSRANS..RSRSRgn.........gnNRSR..SPSNNRGNNQSRGNS-..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------qnr.....................
A0A4D6FTA0_9GAMC/30-381              ..................ppkvgg-------SGSASWFQALKSRKPDGPEPHFSGSGVPVNDNvDLKASHGYWRRQRR..FKPGKGGRKPVGDAWYFYYTGTGPLADLQYADPH........DDVVWVKAKGADTSTRS..kQGTRDP..dKFEQFPLRFADG.gPDNGFRWD.FIPts...rgRSGRNSVASS..REQSR.............----..--NGSRAATPERRGRT..............................--SSVNE..DLIQKAADIILKNQGKS....................-----GRITKAKANEMA..............----ERRYCKRVLAPG..KDVDSVFGARTKNKp.rNFGDDKMVEEGIRDGRTTAMLNIVPSSHALLFGGEVQSK...........LNPE.GL.........AVTFTFTTTVDRNDPQFDNYVKICSECVNGV.........GTRPSGDTKPKSKPssraq.spapkpQ------------rkkqqkkkqqdedvvpkde.....
D9J207_9ALPC/25-357                  .......................s-RSRKNENIPLSFFNPITHTGNKKFWNVAPKDLVPKGKG.NKDQQVGYWNRQER..WRMQKGQKVQLPSRWFFYYLGTGPHQNAKFQERI........DGVYWVGKNGSKTVPTG...LGTRGS...NQESLDLQFDCA..VPAEFKLE.QNV.......NSRSNSRSRS..RGRSK.............----..--SNTRSNDNQSSSQD..............................----IAT..AVAAALAQMGFAPKETQ...................kNKSRSKSRDRAKSSERP.............vPKNENKHSWKKTPGKG..-DVETMFGKRSANS...NFGDAELVKDGSSHKNYPQLAEMVPSTGALVFGGKWEAT...........ESGD.DV.........IVTVNYSYKLSKNDPKTTAFIGQIGAYTKPS.........QVAKEQRSRSKSRE............RAATPVPTT----vsat....................
A0A1L2KGB9_9ALPC/156-387             .....................srg---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......NSRETSRSNS..RQQSR.............DNSR..SPSRSRSNSTSESSQN..............................SAQDLVA..AVTAALKNLGFEPPKSDksg..............nasGTSTPKGKKKPKQAKSNeqgsp...nnvpsdKSQMNKPKWKRVPNAS..ENVIKCFGPRDFDH...NMGDADLVQNGVEAKNFPQIAELIPTQAAMFFDSEVSTK...........EMGN.KV.........QIIYTYKMLVDKDNKHLPKFLEQVSAFTKPS.........VVKETQSHPLQNT-............-------------mpepaqlnvaaaefkpp.......
R9QTB4_SARS/38-390                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIIWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKS..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKK............KTDEAQP------lpqrkkqpt...............
NCAP_BC512/8-364                     .......................p-RGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMG.GKDQQIGYWVEQQR..WRMRRGDRVDLPSNWHFYFLGTGPHSDLPFRKRT........DGVFWVAIDGAKTQPTG...LGVRKS...SEKPLVPKFKNK..LPNNVEIV.EPT.......-TPNNSRANS..RSRSRggqs.....nsrgNSQN..RGDKSRNQSRNRSQSNdr.........................gsdSRDDLVA..AVKKALEDLGVGAAKPKgk...............tqsGKNTPKNKSRSGSVQRA..............-EAKDKPEWRRTPSGD..ESVEVCFGPRGGTR...NFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVATK...........EMAD.GV.........EITYTYKMLVPKDDKNLEIFLAQVDAYKLGD.........----PKPQRKVKRS............RTPTPKPA-----tepvyddv................
H6U5R4_9ALPC/168-404                 ..................nnqsrg---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......NSQNRGNNQG..RGASQn..........rgGNNN..NNNKSRNQSKNRNQSNdrg........................gvtSRDDLVA..AVKDALKSLGIGENPDKlkqqqkp.....kqersdssGKNTPKKNKSRATSKER..............-DLKDIPEWRRIPKGE..NSVAACFGPRGGFK...NFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVR...........ELAD.SY.........EITYNYKMTVPKSDPNVELLVSQVDAFKTGN.........AKPQRKKEKKNKRE............TTQQ---------lneeaiyd................
NCAP_BCHK4/31-397                    .......................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS..RSSSR.............-GGR..STSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK..............----NKMRHKRVATKG..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLESNIDAY.........KTFPKKERKPKTTEdgava.sssasqM------------edvdakpqrkpk............
A3EXJ4_BCHK9/54-408                  .......................e-KPKAAPPQNVSWFAPLVQTGK-QDLRFPRGEGVPISQGvDPVYLHGYWVRTQR..NFQKGGKTVQANPRWYFYYTGTGRHADLRWGQKN........PDLIWVGEDGANINRIG..dMGTRNP..nNDSAIPVQFGSG..IPKGFYAE.GRN.......-SRGNSRNSS..RNSSRa...........sTRGN..SRANSRGASPGRNTPSg...........................gsNSEPWMA..YLVQKLEALETKVNGNK...................sETKAPVQVTKNAAAENA..............----KKLRHKRTPHKG..SGVTANFGRRGPGElegNFGDLEMLKLGADDPRFPAVAQMAPNVAAFMFMSHFSTR...........DEED.AL.........WLNYRGAIKLPKSDPNFEQWTKLLEENLNAY.........KTFPPPAPKKDKKK............KEEASQ-------eiaifedastgtdq..........
B6VDY2_THCOV/156-320                 ..............prsmsmdtrp---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------..-----.............----..----------------..............................-------..-----------------....................AANQPRKRDQSAPAAVR..............-RKTQHQAPKRTLQKG..KTISQVFGHRSRTG..aNVGSADTEKSGMADPRIMALARYVPGVQEMLFAGHVDSQ...........FQVN.DI.........TLTFTYSITVKENSPDYIRIKDALSTVVNQT.........YEPPTKPKKEKKPV............EQASKNNQQKKK-pakqet..................
A0A060A4F5_9NIDO/162-318             ...................nsrgt---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------..-----.............----..----------------..............................-------..-----------------....................-GNQPRKRDQSAPAAVR..............-RKTQHQAPKRTLPKG..KTISQVFGNRSRTG..aNVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESN...........FQAG.AI.........TLTFSYSITVKEGSPDYDRLKDALNTVVNQT.........YEPPTKPTKDKKPD............KQDQSAKPKQQK-kpkk....................
K4K1V4_9ALPC/13-381                  .......................k-PRGRSGRVPLSYYSPVMIDGDQPFWKVMPTNAVPTGMG.DKNQQIGYWNEQPR..WRMVKGQRKELQSKWHFYYLGTGPQEDARYRQRI........EGVFWVAVQGSKTDPTG...LGTRRK...GQNLISPKFAVK..IPSNVVVV.EETsr..ppsRSQSNSRPQS..RNNSRpqs.......knnSQNN..SRDNSRAPSRP----Rsrans...................tsssanDAVDIVA..AVKQALKELGVTPEKKNqekq...........kksnsGSNTPKEAATSRQKSSPs...........tpRKQLERPEWKRVPNKE..ENVIACFGPRDTLH...NFGDQKLIAEGVQAPHYPQLAELVPTPAALLFGGEVSTR...........ERGD.EV.........EIMYVYKMKVHKSNKDLPSFLQQVSAYAQAP.........---DATTTEKATVQ............PLLNPTAPDFKP-a.......................
A0A0U1WHI7_SARS/38-390               .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKS..YNVTQAFGRRGPEQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKK............KTDEAQP------lpqrkkqpt...............
A0A0U1UZD2_9ALPC/9-370               ........................EKRGRSGKVPLSYYNPVIVSGDKPFWKVMPNNAVPKGKG.NKDQQIGYWNEQPR..YRMVRGTRKDLPSKWHFYYLGTGPHAEAKFRTRT........DGVFWVAVQGSKTEPTG...LGTRKR...NAELVNPEFAIQ..LPAAIEIQ.ENTvsr.gnsRNQSSNRDRS..QSGNRsq........ndqKQGN..QNQKSRSNSQSRKGNQns..........................ndSAVDIVA..AVKQALKELGVTNESNKkg...............knsGTTTPKEQRSKSPVRSPt...........vqKKQLERPPWKRVPNST..EDVTKCFGVRDTYR...NFGDADLVRNGIDAKHYPQLAELVPTPAAILFGGEVVTK...........EVGS.DV.........EITYIYKMKVPKTDKNLAAFLKQVSAYSQPS.........QAAEVP--------............-------------sqlnpaavvfqplaedeq......
Q6UZE8_SARS/39-392                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
A0A1L2KGB9_9ALPC/9-166               .......................d-KRGKRKYPPPSFYLPLVVKSDKQPYKVIPRNLVPKGKG.NKDQQIGYWNVQRR..WRMRKGQRVDIDPKVHFYYLGTGPRADLKFRERA........EDVVWVAMQGSKTEPTN...LGNRKR...NQKPIQPEFDIQ..LPNELEVV.EFE......dRSNSSSRASS..RASSR.............GNSR..ETSR------------..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------s.......................
A3EXH8_BCHK9/54-402                  .......................e-KPKAAPPQNVSWYAPLVQTGK-ADLRFPRGEGVPISQGvDPIYQHGYWTRTQR..SFQKGGKTVQANPRWYFYYTGTGRYADLRWGQKN........PDIVWVGEEGANINRVG..dMGTRNP..nNDAAIAVQLGNG..IPKGFYAE.GRG.......-SRGNSRNSS..RNSSRa...........sSRSS..SRPNSRGASPGRNTPNp...........................gaGSEPWMA..YLVSKLENLEAKVNGTK...................pETKAPVQVTKNAAAENA..............----KKLRHKRTPHKG..SGVTMNFGRRGPGDlegNFGDQTMLKLGTDDPRFPAAAQMAPNTAAFLFMSHFSTR...........EEGD.AL.........WLNYKGAIKLPKDDPNYNQWVKILEENLNAY.........KSFPPPEPKKDKKK............KEETSSE------tvvfeda.................
C0KYU5_9BETC/56-417                  ...................qpnsg-----SVVPHYSWFSGITQFQKGKEFQFAQGQGVPIANGiPASQQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDI........EGVVWVASQQADTRTSA..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RPQSR.............----..-GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELV...........KKNS.GGadgptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqnq..dggaDVVSPKPQRKRGTK............QKAQKD-------evdnvsvakpk.............
A0A0U1WHB1_9ALPC/10-364              .......................n-SRGRSGRIPLSYYAPVRVADDKLFLKSMPGNGVPKGMG.GKAEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTN...LGTRNR...NQQLRIPEFDFT..LPDSLEIV.NSD.......-SRPASRSNS..RSQSKs...........nNQSR..SNSKARDQSGTRTPKNasqnq....................kpkknQQEDLVA..AVREALKGLGIQQSRSS...................sGKSTPARSKSPARPSNK..............-KQLDKPEWKRVPNRT..ENATTCFGQRSVER...NCGSASVVGMGVEAPNFPQIAELIPTQAALFFGSRVSTK...........EVGD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKPKAKPEe..........vPQLNPAAPVFTP-p.......................
NCAP_CVMA5/55-416                    ..................tqpnsg-----SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI........EGVFWVANSQADTNTRS..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RSQSR.............----..-GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ............AQEKKD-------evdnvsvakpk.............
#=GR NCAP_CVMA5/55-416         SS    ..................XXXXXX-----XXX----SB--EEE-STT------TT------TT--GGG-EEEEEEE-S-EEE-SSS-EEE---EEEEEETT-STTTT--TT---........TTEEEEE-TTS-TTS--..SS----T..TT---B-----TT----TTEEET.T-X.......XXXXXXXXXX..XXXXX.............----..-XXXXXXXXXXXXXXX..............................-XXXXXX..XXXXXXXXXXXXXXXXX....................-XXXXXXXXXXXXXXXX..............XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX............XXXXXX-------XXXXXXXXXXX.............
B7U2N9_9BETC/53-422                  .....................qpp---GGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADVNTPA..dILDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS..RASSR.............-ASS..AGSRSRANSGNRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEIR..............QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnldePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDGMMNMSPKPQ............RQRGQK-------ngqgendnisvaapksrvqqnk..
A0A088DI26_9BETC/35-377              .......................r-KPRPAPQNNVSWFTPLTQHGK-QALTFNPGQGVPLNANdDPDSRIGYWRRNIR..TVTKNGKPQKLDPRWYFYYLGTGPEQNLKYLQQK........DGIVWVAAHGALNVPVK..tVGTRNP..aNDQAIVAAFAPGteLPKGFYVE.GSR......sTSSASSAASS..RSNSR.............--SR..NSSLSRSSSPGRGLPPa...........................tdPNGVLAA..LLLTKLEALDAKVNGPK....................---QPPVVTKKTAAEIA..............----AKPRQKRVAHKG..YNVNAAYGRRGPGPyqgNFGTQEFNKLGTDYPKWPQIAQLAPTPSAFFGMSRFAVQ...........KNDD.GT.........WLTYHGHIKMDESDPNFQVWMTELQQNIDAY.........KNFPQKEEKKSRKP............KTKN---------vdmapqdv................
U5WLN3_SARS/39-392                   .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----RKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
Q9J3E2_9BETC/55-417                  ..................tqpnsg-----SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI........EGVFWVANSQADTNTRS..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS..RSQSR.............----..-GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR..............QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ............AL-----------ekkdevdnvsvakpks........
H9BR29_9NIDO/1-174                   .......................m-AVPSVPKADCSWFQIIKAQNKKVQPLAFKGDGVPINTTlPKEMCHGYWLRYKR..VKPGGA---PLPPSYSFYYTGTGPRATLKYGELQdsdnqdnvNRVLWVKSPDADTSIKP..kVAKRNP..dKHPLLPLRFKPGdgPVQGFRID.PFQ......sRGRSVERGQQdrRAQSA.............EPQ-..-RPKQRERS-------..............................-------..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------rs......................
A0A1B3Q5X0_9BETC/50-395              .......................e-KPRAAPMQNVSWFAPLVQTGK-SDLKFAHGEGVPVSQGvDGTYQHGYWLRTQR..NFTKGGKSLTANPRWYFYYTGTGRYADLRFGTRQ........PDILWVGRNGANVNKVG..nMGTRNP..nNDSAIPVQLPEG..IPKGFYAE.GT-.......RSRNSSRSSS..RGSSRn...........tSASN..SRANSRASSPGRNLPPq............................aGSEPWMA..YLVQKLQALESKVDGKK....................PEKTPQKVTKQGAANMA..............----DKLRHKRTPHKG..SGVTQNFGRRGPGDlegNFGDLEMLKLGTDDPRFPAAAQMAPTAAAFLFMSHFDTR...........EEND.AT.........WLNYRGAIKLPKDNPNYATWMKLLKENVDAY.........KDFPQTPERETKKK............KKDVV--------vedvtvve................
Q0Q099_9ALPC/9-395                   .......................e-PRGRSGRVPLSLFAPLRTTDGSLFFRAMPQNGVPKGFG.NKDQQVGYWNEQVR..WRMKRGQRQNLPSNWHFYYHGTGPHADAKFREKI........QGVFWVAKQGSKVAPTD...LPTRKR...NQPTIEPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS..RSQSS.............----..GGSKSRANSQSRDNSDqqktpkgstnnsgsnsqersqkskkgkgstDQDDLVN..AVRQALMGLGFQPQGNSgknggk........ksapssGKSTPKDSRSKSPARPQs............tKKQLDKPEWKRVPNKS..ESVTACFGPRDVSR...NFGTKGLVAEGVEYSHFPQIAELLPTQAALAFGSRVEVK...........DFKD.EV.........EIKFHYKMNVPKENKNLQVFLDQVDAYLDPS.........REEKPKEQRKSKEKkke......eapAQ-----------lnpaapvftpp.............
A0A0U1WJV4_9ALPC/9-394               .......................e-TRGRSGKVPLSLYAPLRTTDGAPFFRAMPGNGVPTGMG.KKDQQVGYWNEQVR..WRMQKGQRKNLPSNWHFYYHGTGPHKDAKFREKI........QGVFWVAKQGSKVAPTD...LPTRKR...NQPTIEPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS..RSQSS.............----..GGSKSRANSQSRDNSNqqktpkgstnnsrsnsqersqkskkgkggsNQDELVA..AVRQALMGLGFQPQGNSgktggk........ksapssGKSTPKDSRSKSPARPQs............tKKQLDKPEWKRIPNKS..EGVIACFGPRDVSH...NFGTKGLVSDGVEFPQFPQIAELIPTQAALVFGSRVEVK...........EFQN.EF.........EIKYHYKMNVPKDNKNLPVFLQQVDAYLDPS.........REDKPKEQRKPKEK............KKEETSPQ-----lnpaapvftp..............
B2BW44_9GAMC/26-352                  ..................qapalp------TSGNVSWFQAIKGRKAGEEGITFKGPGVPVNENvSKNQNHGYWIQRSR..TTPGG---KKLAPLYYFYYTGTGPRDQAKYGQEI........PYVTWVKGDGAKTSQLS..eAGSRDVn.kFPNAFPLIFPTGdgPERGFFIErSRS.......RSRSNSQADN..RSKSR.............ERSQ..SSDKPRKEDRGRSKSP..............................-------..---------AQKN----....................-PGSGGKITKEKAALMV..............----SRAYSKRTLPPN..KPVDQVFGSRDTEK...NFGDAEMIKKGMSDPRFTAALIPTPGPQAALFGSHVTLK...........EKPD.GL.........EITYKYRTLFPKTDERYEEVKHAYLSNVPLQ.........DGGQPLHSSGVQKK............LKSR---------sksrdrtddgvenpt.........
U5LQW6_9BETC/31-382                  .......................p-KPRPAPNVSVSWYTGITQHGK-QPLAFPAGQGVPLNANsTPKQNAGYWRRQDR.kLNTGNG-VKQLAPRWYFYYTGTGPEANLPFRTVK........DGIYWVWEEGASEAPSD...FGTRNP..aNDAAIVTQFAPGtqLPKNCHIE.GTGgnsqsssRASSASRNSS..RSNSR.............---G..SQPGSRSHSPGSVGPS..............................--DASAL..LYLELAKRLEALEAGKS....................-KSAPKVITKKDAADAK..............----KKMRHKRVATKA..YNPTQAFGLRGPGDlqgNFGDLKYCKEGVDDPRWPQMAELAPSASAFLSMSQLKLV...........HHSN.DTdnk...pvyMLRYSGAIKLDPKNPNYSKWLEILEGNIDAY.........KNFPKKEKKQKQSQ............IKQEAEDP-----ewdstd..................
NCAP_SARS/39-392                     .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
#=GR NCAP_SARS/39-392          SS    .................XXXXXXX-----SXSSXBXSBXEEEEXSS-SXXXXXTTXXSXXXTTSXGGGXEEEEEEEXX.EEEXTTTXEEEXXXEEEEEETTSSTTTTSXTTXXX........TTEEEEEXTTXBSSXXT..TTSXBXT..TTXXXBXXXXXTTXXXSTTEEXX.XXX......SXXXXXXXXXX..XXXXX.............XXXX..XXXXXXXXXXXXXXXX.............................XXXXSXXX..XXXXXXXXXXXXXXXXX....................XXXXXXXXXXSXCGCGS..............----SSXGGGXXXBTT..SXHHHHH--BSSSTTSBSB--HHHHHHGGGSTTHHHHHTTS--HHHHHHHSEEEEE...........EETT.EE.........EEEEEEEEEE-TTSTTHHHHHHHHHHHBTGG.........GGS-TT--XXXXXXXX........XXXXXXXXXXX----XXXX....................
NCAP_CVP67/52-420                    ..................qqpsgg-----TVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPSTEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADINTPA..dIVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS..RAPNR.............AP-S..AGSRSRANSGNRTSTP..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR..............QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnpdePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNQNLNAYqhq..edgmMNISPKPQRQRGQKn..........gQVENDN-------vsvaapksrvq.............
A0A0K1YZZ7_SARS/38-391               .................kqrrpqg-----LPNNTASWFTALTQHGK-EELRFPQGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIIWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS..RSRGN.............SRNS..TPGSSRGTSPARIASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS..............----KKPRQKRTATKQ..YNVTQAFGRRGPDQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt........deAQPLPQRQK----kqpt....................
A0A0U1WHF1_9ALPC/7-176               .......................e-ASGRTGRTPLSFFAPLTVSSDKKFWNVLPKNAVPTGKG.NAKQQVGYWNEQPR..WRMQRGERVEKPSYWHFYFLGTGPHADAKFRERI........PGVVWVSKANADLNPTN...LGTRSK...ARSVITPKFDSE..LPSDIEIV.DKS.......-SAPNSRGNS..RSQSR.............-GPG..NGANSRNNSKGRNNTN..............................SR-----..-----------------....................-----------------..............----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------............-------------dn......................
NCAP_CVPPU/23-359                    .......................s-RGRKNNNIPLSFFNPITLQQGSKFWNLCPRDFVPKGIG.NRDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVVWVAKDGAMNKPTT...LGSRGA...NNESKALKFDGK..VPGEFQLE.VNQ.......-SRDNSRSRS..QSRSR.............--SR..NRSQSRGRQQFNNKKD..............................--DSVEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKERSNSKTRDTT..............PKNENKHTWKRTAGKG..-DVTRFYGARSSSA...NFGDTDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSK...........EDGD.QI.........EVTFTHKYHLPKDDPKTGQFLQQINAYARPS.........EVAKEQRKRKSRSK............SAERSEQ------dvvpd...................
A0A1X9JRR1_9ALPC/26-370              .......................t-QNRTNGSIPLSWFTAIIDESNGNFTSLMPSSGVPTGVG.TAAQQCGYWYRAPT.aYQVRRGKRVALPPAWYFYFLGTGPHANAAYGTAM........DGVFWVKTKNGQIDAKSskaLGVRGN...GTEPKRANVPN-..LPEGLRVN.LPN.......GSRPQSRAQS..QNRNG.............--SR..ASSMNRNNSRAPSVDR..............................TKEDLKA..VVSQLLSEMGVSKTNKT....................---QPQSKKKKGATPTGt...........phPNQDGKPVWKRKPNKE..EDVTQCFGPRSDSK...NFGDAAFLQHGVDDDRFKAVSFYAPGTAASLFDSKITVA...........DSHDgKK.........LVTFHTTIEVDPNRPEFELFMSQIDAFKKPA.........-SFQQTQRFWETQAd..........qSKITDYFKATT--pg......................
A0A0U1WHF4_9ALPC/9-371               ........................EKRGRSGKVPLSYYNPVIVSGDKPFWKVMPNNAVPKGKG.NKDQQIGYWNEQPR..YRMVRGTRKDLPSKWHFYYLGTGPHAESKFRTRT........EGVYWVAVQGSKTEPTG...LGTRKR...NAELVNPEFAIQ..LPAAIEIQ.ENTvsr.gnsRSQSSNRDRS..QSGNRsq........ndqKQGN..QNQKSRSNSQSRKGNQns..........................ndSAVDIVA..AVKQALKELGVTNESNKkg...............knsGTNTPKEQRSKSPARSPt...........vqKKQLERPPWKRVPNST..EDVTKCFGVRDTHR...NFGDADLVRNGIDAKHYPQLAELVPTPAAVLFGGEVVTT...........EVGS.DV.........EITYIYKMKVPKTDKNLPAFLKQVSAYSQPS.........QAAEVPS-------............-------------qlnptavafqplaedeqv......
#=GC SS_cons                         .................XXXXXXX-----SSSSXBSSBXEEEESSSTSXXXXCTTXXSXXXTTSXGGGGEEEEEEEEC.EEECTTSSEEEEEEEEEEEETTSSTTTTSXTTXXB........TTEEEEEBTTSBTTSXT..TTCHBXT..TTSXXBXXXXCTTXEESTTEEET.TSX......SXXXXXXXXXX..XXXXX.............XXXX..XXXXXXXXXXXXXXXX.............................XXXXCEEE..XXXXSXXXXXXXXXXXX....................XXXXXXXXXXSXHHHHH..............----SSXGGGXXXBTT..CXHHHHH-SBSSSTTSBSB--HHHHHHGGGSTTHHHHHTTS--HHHHHHHSEEEEE...........EETT.EE.........EEEEEEEEEE-TTSTTHHHHHHHHHHHBTGG.........GGS-TT--XXXXXXXX........XXXXXXXXXXX----XXXX....................
#=GC seq_cons                        .......................s.....ssssshSaFsslptpsctp.hphh.upGVPhstu.stspQhGYWhRpsR..h+hscGppppLss+WaFYYhGTGPcAshpatpph........-GlhWVAppGApsssps...lGsRss...sptshshpFs.u..lPpsahl-.sss.......tSpssSRusS..RSpSp..............tsp..ssupoRusSsscpsss...............................ttslh...hlhptlttLt.t.ttpp.....................tppsppho+psuspsp..................pK.p.KRsssKs...sVspsFGtRussp...NFGst-hlc.Gsss.paPtlAphsPosuAhhFsS+lphp............pss.sh..........lpYphshplscssPphpphhp.lsthlssh.........pshs.ppt+ptppp............tt...........tt......................
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