GenomeNet

Database: Pfam
Entry: CoV_nucleocap
LinkDB: CoV_nucleocap
Original site: CoV_nucleocap 
#=GF ID   CoV_nucleocap
#=GF AC   PF00937.20
#=GF DE   Coronavirus nucleocapsid
#=GF PI   Corona_nucleoca;
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Pfam-B_267 (release 3.0)
#=GF GA   30.00 30.00;
#=GF TC   39.30 39.00;
#=GF NC   26.50 26.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   31776274
#=GF RT   Nucleocapsid Protein Recruitment to Replication-Transcription
#=GF RT   Complexes Plays a Crucial Role in Coronaviral Life Cycle.
#=GF RA   Cong Y, Ulasli M, Schepers H, Mauthe M, V'kovski P, Kriegenburg
#=GF RA   F, Thiel V, de Haan CAM, Reggiori F;
#=GF RL   J Virol. 2020; [Epub ahead of print]
#=GF RN   [2]
#=GF RM   28720894
#=GF RT   Coronavirus nucleocapsid proteins assemble constitutively in
#=GF RT   high molecular oligomers.
#=GF RA   Cong Y, Kriegenburg F, de Haan CAM, Reggiori F;
#=GF RL   Sci Rep. 2017;7:5740.
#=GF RN   [3]
#=GF RM   25299332
#=GF RT   Nucleocapsid phosphorylation and RNA helicase DDX1 recruitment
#=GF RT   enables coronavirus transition from discontinuous to continuous
#=GF RT   transcription.
#=GF RA   Wu CH, Chen PJ, Yeh SH;
#=GF RL   Cell Host Microbe. 2014;16:462-472.
#=GF DR   INTERPRO; IPR001218;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Coronavirus (CoV) nucleocapsid (N) proteins have 3 highly
#=GF CC   conserved domains. The N-terminal domain (NTD) (N1b), the
#=GF CC   C-terminal domain (CTD)(N2b) and the N3 region. The N1b and N2b
#=GF CC   domains from SARS CoV, infectious bronchitis virus (IBV), human
#=GF CC   CoV 229E and mouse hepatic virus (MHV) display similar
#=GF CC   topological organisations. N proteins form dimers, which are
#=GF CC   asymmetrically arranged into octamers via their N2b domains.
#=GF CC   Domains N1b and N2b are linked by another domain N2a that
#=GF CC   contains an SR-rich region in which  phosphorylation of specific
#=GF CC   serine residues allows the N protein to associate with the RNA
#=GF CC   helicase DDX1 permitting template read-through, and enabling the
#=GF CC   transition from discontinuous transcription of subgenomic mRNAs
#=GF CC   (sgmRNAs) to continuous synthesis of longer sgmRNAs and genomic
#=GF CC   RNA (gRNA)[1], [2], [3]. It has been shown that N proteins
#=GF CC   interact with nonstructural protein 3 (NSP3) and thus are
#=GF CC   recruited to the replication-transcription complexes (RTCs) [1].
#=GF SQ   87
#=GS A0A0A7UXF2_9BETC/49-411   AC A0A0A7UXF2.1
#=GS NCAP_FIPV/23-355          AC P25909.1
#=GS NCAP_CVH22/12-375         AC P15130.2
#=GS A0A0N7J131_CVH22/12-375   AC A0A0N7J131.1
#=GS Q9J3E2_9BETC/55-416       AC Q9J3E2.1
#=GS H9BR12_9NIDO/159-326      AC H9BR12.1
#=GS H6U5R4_9ALPC/7-182        AC H6U5R4.1
#=GS H9BR21_9NIDO/1-327        AC H9BR21.1
#=GS B6VDY2_THCOV/157-320      AC B6VDY2.1
#=GS Q19U26_CVHK1/52-406       AC Q19U26.1
#=GS Q06BD4_9BETC/53-415       AC Q06BD4.2
#=GS Q6UZF2_SARS/40-392        AC Q6UZF2.1
#=GS A0A1L7HJ39_9ALPC/26-371   AC A0A1L7HJ39.1
#=GS B7U2N9_9BETC/52-422       AC B7U2N9.1
#=GS B8Q8V5_SARS/40-392        AC B8Q8V5.1
#=GS H9BR12_9NIDO/1-168        AC H9BR12.1
#=GS NCAP_CVMJH/56-417         AC P03417.1
#=GS H9TEX7_9ALPC/23-360       AC H9TEX7.1
#=GS A0A0U1WHB5_9ALPC/10-364   AC A0A0U1WHB5.1
#=GS A0A0K1RLP0_9ALPC/23-360   AC A0A0K1RLP0.1
#=GS A0A0U1WHF1_9ALPC/169-393  AC A0A0U1WHF1.1
#=GS NCAP_CVP67/52-416         AC Q8BB23.1
#=GS NCAP_SARS/40-392          AC P59595.1
#=GS NCAP_SARS/40-392          DR PDB; 2CJR F; 252-363;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR A; 251-365;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR B; 253-365;
#=GS NCAP_SARS/40-392          DR PDB; 2OG3 A; 50-174;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR D; 251-365;
#=GS NCAP_SARS/40-392          DR PDB; 6IEX C; 1-10;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR G; 255-363;
#=GS NCAP_SARS/40-392          DR PDB; 2GIB A; 270-366;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR H; 256-365;
#=GS NCAP_SARS/40-392          DR PDB; 2JW8 A; 248-365;
#=GS NCAP_SARS/40-392          DR PDB; 2JW8 B; 248-365;
#=GS NCAP_SARS/40-392          DR PDB; 2OFZ A; 49-174;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR E; 256-365;
#=GS NCAP_SARS/40-392          DR PDB; 2GIB B; 274-369;
#=GS NCAP_SARS/40-392          DR PDB; 2CJR C; 253-365;
#=GS NCAP_SARS/40-392          DR PDB; 1SSK A; 21-158;
#=GS S5YAG0_9ALPC/7-382        AC S5YAG0.1
#=GS H9BZY3_9BETC/56-416       AC H9BZY3.1
#=GS A0A0U2UGH8_9ALPC/23-360   AC A0A0U2UGH8.1
#=GS A0A0U1WHF5_9ALPC/13-196   AC A0A0U1WHF5.1
#=GS A8JNZ6_9ALPC/13-358       AC A8JNZ6.1
#=GS A0A0U1WJZ1_SARS/40-392    AC A0A0U1WJZ1.1
#=GS A0A0K1YZZ7_SARS/39-391    AC A0A0K1YZZ7.1
#=GS H9BR04_9NIDO/1-318        AC H9BR04.1
#=GS B1PHJ2_9ALPC/10-359       AC B1PHJ2.1
#=GS B6VDY2_THCOV/1-166        AC B6VDY2.1
#=GS R4WKE3_9BETC/52-420       AC R4WKE3.1
#=GS T2BBK0_MERS/31-388        AC T2BBK0.1
#=GS A0A0U1UZD6_SARS/38-390    AC A0A0U1UZD6.1
#=GS C0KZ04_9BETC/55-416       AC C0KZ04.1
#=GS A0A0F6WGG4_9GAMC/23-339   AC A0A0F6WGG4.1
#=GS A0A0U1WJU3_9ALPC/9-395    AC A0A0U1WJU3.1
#=GS NCAP_CVPPU/23-360         AC P04134.2
#=GS B1PHJ9_9ALPC/10-364       AC B1PHJ9.1
#=GS A0A240FW20_9ALPC/18-354   AC A0A240FW20.1
#=GS H9BR39_9NIDO/1-322        AC H9BR39.1
#=GS NCAP_SARS2/22-391         AC P0DTC9.1
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI A; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WKP B; 48-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6M3M C; 47-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6VYO D; 49-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6VYO C; 49-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZO C; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZO B; 254-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZQ A; 251-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6M3M B; 48-174;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZQ D; 250-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WKP C; 50-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZQ C; 249-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WKP D; 49-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI E; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZO D; 255-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZO A; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WZQ B; 251-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI C; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6VYO A; 50-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6M3M A; 49-174;
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI B; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI D; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6M3M D; 48-174;
#=GS NCAP_SARS2/22-391         DR PDB; 6YI3 A; 4-140;
#=GS NCAP_SARS2/22-391         DR PDB; 6WJI F; 257-364;
#=GS NCAP_SARS2/22-391         DR PDB; 6VYO B; 49-173;
#=GS NCAP_SARS2/22-391         DR PDB; 6WKP A; 50-173;
#=GS A0A023YAJ4_MERS/32-386    AC A0A023YAJ4.1
#=GS A0A0U1WJZ8_BCHK4/31-397   AC A0A0U1WJZ8.1
#=GS NCAP_CVHOC/52-422         AC P33469.1
#=GS NCAP_CVHOC/52-422         DR PDB; 4LM7 A; 58-191;
#=GS NCAP_CVHOC/52-422         DR PDB; 4LMT A; 58-191;
#=GS NCAP_CVHOC/52-422         DR PDB; 4LM9 A; 58-190;
#=GS NCAP_CVHOC/52-422         DR PDB; 4LMC A; 58-190;
#=GS NCAP_CVHOC/52-422         DR PDB; 4J3K A; 46-179;
#=GS NCAP_CVHOC/52-422         DR PDB; 4KXJ A; 58-191;
#=GS NCAP_CVHOC/52-422         DR PDB; 4LI4 A; 58-191;
#=GS A0A0U1WJX5_SARS/1-75      AC A0A0U1WJX5.1
#=GS A3EXC8_BCHK4/31-397       AC A3EXC8.1
#=GS A0A125R5H7_9ALPC/23-355   AC A0A125R5H7.1
#=GS H9BR29_9NIDO/155-321      AC H9BR29.1
#=GS E0ZN56_BCHK9/53-406       AC E0ZN56.1
#=GS E0ZN64_BCHK9/53-400       AC E0ZN64.1
#=GS NCAP_CVM2/50-413          AC Q9PY96.1
#=GS A3EXF5_BCHK5/30-395       AC A3EXF5.1
#=GS D9J207_9ALPC/25-357       AC D9J207.1
#=GS A3EXJ4_BCHK9/54-404       AC A3EXJ4.1
#=GS B8Q8T3_SARS/40-392        AC B8Q8T3.1
#=GS V5TGZ7_9GAMC/26-352       AC V5TGZ7.1
#=GS NCAP_BCHK5/30-392         AC A3EXD7.1
#=GS H6U5R4_9ALPC/168-404      AC H6U5R4.1
#=GS NCAP_BCHK4/31-397         AC A3EXA1.1
#=GS K4K1V4_9ALPC/13-381       AC K4K1V4.1
#=GS A0A0U1UZD2_9ALPC/9-370    AC A0A0U1UZD2.1
#=GS NCAP_BC512/8-363          AC Q0Q462.1
#=GS NCAP_IBVB/23-354          AC P69596.1
#=GS NCAP_IBVB/23-354          DR PDB; 2BXX B; 29-160;
#=GS NCAP_IBVB/23-354          DR PDB; 2BTL A; 29-160;
#=GS NCAP_IBVB/23-354          DR PDB; 2BTL B; 29-160;
#=GS NCAP_IBVB/23-354          DR PDB; 2CA1 A; 218-326;
#=GS NCAP_IBVB/23-354          DR PDB; 2CA1 B; 225-326;
#=GS NCAP_IBVB/23-354          DR PDB; 2BXX A; 29-160;
#=GS NCAP_CVPIA/52-422         AC Q8JSP4.1
#=GS NCAP_CVMA5/55-416         AC P03416.2
#=GS NCAP_CVMA5/55-416         DR PDB; 3HD4 A; 64-194;
#=GS A0A088DI26_9BETC/35-377   AC A0A088DI26.1
#=GS A0A0D5Z9E4_9NIDO/1-318    AC A0A0D5Z9E4.1
#=GS Q0PL08_9ALPC/23-360       AC Q0PL08.1
#=GS A0A1B3Q5X0_9BETC/50-395   AC A0A1B3Q5X0.1
#=GS Q0Q099_9ALPC/9-395        AC Q0Q099.1
#=GS E0XJ00_9BETC/37-389       AC E0XJ00.1
#=GS B2BW44_9GAMC/26-352       AC B2BW44.1
#=GS U5LQW6_9BETC/31-382       AC U5LQW6.1
#=GS D2E275_SARS/40-392        AC D2E275.1
#=GS NCAP_BCHK9/54-399         AC A3EXH0.1
#=GS A0A0U1WJV4_9ALPC/9-395    AC A0A0U1WJV4.1
#=GS NCAP_BC279/39-390         AC Q0Q468.1
#=GS H9AA69_9BETC/51-417       AC H9AA69.1
#=GS A0A0U1WHF5_9ALPC/173-409  AC A0A0U1WHF5.1
#=GS R9QTB4_SARS/39-390        AC R9QTB4.1
#=GS A3EXB0_BCHK4/31-397       AC A3EXB0.1
#=GS A0A1X9JRR1_9ALPC/26-370   AC A0A1X9JRR1.1
#=GS A0A0U1WHF1_9ALPC/7-179    AC A0A0U1WHF1.1
#=GS H9BR29_9NIDO/1-175        AC H9BR29.1
A0A0A7UXF2_9BETC/49-411              ...................q-ASGGNVVPFYSWFSGITQFQKGQEFGFEQGQGVPLTNGvPPSEEKGYWYRHNRksYRTADGQQRQLLPRWYFYYLGTGPYANKQYGSDI........DGVVWVASPNVDVRSPA..dVPDRDP..tSHQAEPTRFAPGtvLPKGYYVE.GSG.......RSAPSSRSSS.RASSR.............ASSVGGSRSRNNSASRNNTS..............................---EVTP..DMADQIASLVLAKLNKE....................-SGKPVQVTKQTAKEIK................QKILNKPRQKRTPNKQ..CTVQQCFGKRGPSQ...NFGGGSMLKLGTSDPQFPILAELAPTAGAFFFGSKLELAkvnnmsgaadePQKD.VY.........ELRYSGAIRFDSTLPGFETIMKVMNENLDAYqht..eegaQLLSPKFQRKQKKG........QVEKDNVSAATPK.........................
NCAP_FIPV/23-355                     ...................s-RGRKNNDIPLSFYNPITLEQGSKFWNLCPRDLVPKGIG.NKDQQIGYWNRQIR..YRIVKGQRKELAERWFFYFLGTGPHADAKFKDKI........DGVFWVARDGAMNKPTT...LGTRGT...NNESKPLRFDGK..IPPQFQLE.VN-.......RSRNNSRSGS.QSRSV.............------SRNRSQSRGRHHSN.............................nQNNNVED..TIVAVLEKLGVTDKQRS....................-RSKPRERSDSKPRDTT................PKNANKHTWKKTAGKG..-DVTTFYGARSSSA...NFGDSDLVANGNAAKCYPQIAECVPSVSSIIFGSQWSAE...........EAGD.QV.........KVTLTHTYYLPKDDAKTSQFLEQIDAYKRPS.........EVAKDQRQRRSRSK........SADKK--------peelsvt..................
NCAP_CVH22/12-375                    ...................p-QRGRQGRIPYSLYSPLLVDSE-QPWKVIPRNLVPINKK.DKNKLIGYWNVQKR..FRTRKGKRVDLSPKLHFYYLGTGPHKDAKFRERV........EGVVWVAVDGAKTEPTG...YGVRRK...NSEPEIPHFNQK..LPNGVTVV.EEP.......DSRAPSRSQS.RSQSR.............GRGESKPQSRNPSSDRNHNS..............................-QDDIMK..AVAAALKSLGFDKPQEKdkksaktgtpkpsrnqspasS-------QTSAKSLARsqss.......etkeqKHEMQKPRWKRQPNDDvtSNVTQCFGPRDLDH...NFGSAGVVANGVKAKGYPQFAELVPSTAAMLFDSHIVSK...........ESGN.TV.........VLTFTTRVTVPKDHPHLGKFLEELNAFTREM.........QQHPLLNP------........-------------salefnpsqtspataepvr......
A0A0N7J131_CVH22/12-375              ...................q-PRGRQARIPYSLYRPLLVDSE-QPWKVIPRNLVPTNKK.DKSKLIGYWNVQKR..FRTRKGQRVDLPPKLHFYYLGTGPHQDAKFRDRR........EGVIWVAIDGAKTEPTG...YGVRRR...NADPEEPRFNQN..LPSGVSIV.EEP.......DSRGPSRSQS.RSQSR.............GRGASKPQSRNTSTERSQGS..............................NQEDLLK..AVAAALKSLGFEKPQEKdqkkgrkstpkpsrsqspvaN---------------QsrsksparsassdkeqKHEMQKPRWKRQPNSDktSNVTQCFGPRDFEH...NFGNPELLANGVKAKGYPQFAELVPSTAAMLFDSHIDTK...........EEGE.SV.........VLTYTTRVKVPKDHPNLGKFLDQLNAFTKPS.........SVKETQSH------........-------------pmnpaapefspivpsnpep......
Q9J3E2_9BETC/55-416                  ..............tqpnsg-----SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI........EGVFWVANSQADTNTRS..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RSQSR.............-----GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ........AL-----------ekkdevdnvsvakpk..........
H9BR12_9NIDO/159-326                 .............qsvtdrp---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------.-----.............--------------------..............................-------..-----------------....................NQNQPKRRDRSAPATVR................-RKTQHQAPKRTLLKG..KTISQVFGARSRSG..aNVGSADTEKTGMADPRIMALARHAPGVQELLFAGHLDSS...........FQQEgAL.........TLTFTYSITVKPDSPDYDRLKEALSSVVNQT.........YEAPTKPVKAKKPEs......dQSSKPKQPRKQ--knskpsdkea...............
H6U5R4_9ALPC/7-182                   ..................qd---RGRKRVPLSLYAPLRVTNDKPLSKVLANNAVPTNKG.NKDQQIGYWNEQIR..WRMRRGERIEQPSNWHFYYLGTGPHADLRYRTRT........EGVFWVAKEGAKTEPTN...LGVRKA...SEKPIIPNFSQQ..LPSVVEIV.EPNt....ppTSRANSRSRS.RGNGN.............NRSRSPSNNRGNNQSRGNSQ..............................-------..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------nrgnnq...................
H9BR21_9NIDO/1-327                   ...................m-AVPRVPRADASWFQPIKAQNKKITAPSFKKNGVPVNASlQAADQHGYWLRYNR..TKSGGG---SIPAAFSFYYTGTGPYATLKFGETP.......sDRITWVKGPSAVTTNKP..kVAKRDP..dKHPLLPLTFPPGdgVNTGL---.---.......RVDPF-QNRG.RTMDR.............-----GPNQRSSSAPVDSGN..............................-------..-----------------....................--RNQRARSKSAPSRTN................--PKTHQIPKRTLTKG..KTISQVFGKRTPGG..aNVGSADTEKAGFTDPRLMCLMRHTPGTQELLLAGHLDHD...........IQPE.GV.........YLKFTYTTQVKRDSAEYDRVIAALNNVVNQK.........YDADNLPSQKPKSTkpk..pkkE-----KKER---appkqqqkeqkqepqhesedtkk..
B6VDY2_THCOV/157-320                 ...........rsmsmdtrp---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------.-----.............--------------------..............................-------..-----------------....................AANQPRKRDQSAPAAVR................-RKTQHQAPKRTLQKG..KTISQVFGHRSRTG..aNVGSADTEKSGMADPRIMALARYVPGVQEMLFAGHVDSQ...........FQVN.DI.........TLTFTYSITVKENSPDYIRIKDALSTVVNQT.........YEPPTKPKKEKKPV........EQASKNNQQKKK-pakqet...................
Q19U26_CVHK1/52-406                  ...................t-QPQGNPIPHYSWFSGITQFQKGRDFKFPDGQGVPIAYGiPPSEAKGYWYKHNRrsFKTADGQQKQLLPRWYFYYLGTGPYASSSYGDAH........EGIFWVASHQADTSIPS..dVSARDP..tIQEAIPTRFSPGtiLPQGYYVE.GSG.......RSASNSRPGS.RSQSR.............-GPNNRSLSRSNSNFRHSDS..............................---IVKP..DMADEIASLVLAKLGKD....................--SKPQQVTKQNAKEIR................HKILMKPRQKRTPNKF..CNVQQCFGKRGPLQ...NFGNSEMLKLGTNDPQFPILAELAPTPGAFFFGSKLELF...........KRDS.DAdsps.kdtfELRYSGSIRFDSTLPGFETIMKVLKENLDAY.........VNSNQNT-V-----........-------------sgslspkpqrkrgvkqspesfds..
Q06BD4_9BETC/53-415                  .................qps---GGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVYWVASNQADVNTPA..dILDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RASSR.............-ASSAGSRSRANSGNRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEIR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnldePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDGTMNMSPKPQ........RQRGQK-------ngqgendnisvaapk..........
Q6UZF2_SARS/40-392                   .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
A0A1L7HJ39_9ALPC/26-371              ...................s-QNRTNASNPLSWFTSIIDESNGNFISLMPHSGVPTGMG.TAAQQCGYWYRAPT.vYQVRRGKRVPLPPVWYFYFLGTGPHANAAYGTAM........DGVFWVKTKNGQIDPKStkaLGVRDS...GTDPRRANIPN-..LPEGLRVN.VPN.......ASRPQSRAQS.QTRSQ.............NTSRASSVSRNGSRAPSVDR..............................TKEDLKA..VVSQLLAEMGISKNSKQ....................TQNQKKQKGSTPAATPH................PNQDGKPVWKKKPNKE..ETVAQCFGPRSDNK...NFGDAEFLRLGVDDPRFKTASYYAPGAAASLFDSMVTVS...........DGPDgKK.........RVTFHTTIEVDPTKPGFEVFLAQIDAFKKPA.........-TFQQTQNFWENQA........STQNN--------iseyfrgtt................
B7U2N9_9BETC/52-422                  ................qqpp---GGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADVNTPA..dILDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RASSR.............-ASSAGSRSRANSGNRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEIR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnldePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDGMMNMSPKPQ........RQRGQ--------kngqgendnisvaapksrvqqnk..
B8Q8V5_SARS/40-392                   .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
H9BR12_9NIDO/1-168                   ...................m-ATPAVPTTDASWFQVLKAQNKKAIHPQFKGNGVPVNSAiKPQENHGYWLRFAR..QKPGGA---QIPPSYAFYYTGTGPRGNLKYGEYPpnd.skdtSRITWVKGPGADTTVKP..hVAKRNPnnpKHQLLPLRFPPGdgPAAGFRVDpFNS.......RGRAMERGNGpRSQSV.............--------------------..............................-------..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------tdrpnqn..................
NCAP_CVMJH/56-417                    ...............qpnsg-----SVVPHYSWFSGITQFQKGKEFQFAQGQGVPIANGiPASQQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPYAGAEYGDDI........EGVVWVASQQAETRTSA..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RPQSR.............-----GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGPEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELV...........KKNS.GGadgptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqnq..dggaDVVSPKPQRKRGTK........QKAQK--------devdnvsvakpk.............
H9TEX7_9ALPC/23-360                  ...................s-RGRKNNNIPLSFFDPITLQQGAKFWNLCPRDFVPKGIG.NKDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVFWVAKDGAMNKPTT...LGNRGA...NNESKALKFDGK..VPSEFQLE.VNQ......sRDNSRSRSQS.RSQSR.............--NRSQSRGRQQSNNKKDDS..............................----VEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKERSNSKTRDTT................PKNENKHTWKRTAGKG..-DVTKFYGARSSSA...NFGDSDLVANGSGAKHYPQLAECVPSVSSILFGSYWTAK...........EDGD.QI.........EVTFTHKYHLPKDDPKTGQFLQQINAYARPS.........EVAKEQRQRKARSK........SAERSEQE-----vvpda....................
A0A0U1WHB5_9ALPC/10-364              ...................n-SRGRSGRIPLSYYAPVRVADDKLFLKSMPGNGVPKGMG.GKAEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTN...LGTRNR...NQQLRIPEFDFT..LPDSLEVV.NSD.......-SRPASRSNS.RSQSKs...........nNQSRSNSKARDQSGTRTPKNasqnq....................kpkknQQEDLVA..AVREALKGLGIQQSRSS...................sGKSTPARSKSPARPSNK................-KQLDKPEWKRVPNRT..ENATTCFGQRSVER...NCGSASVVGMGVEAPNFPQIAELIPTQAALFFGSRVSTK...........EVGD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKPKAKPEe......vPQLNPAAPVFTP-p........................
A0A0K1RLP0_9ALPC/23-360              ...................s-RGRKSNNIPLSFFNPITLQQGSKLWNLCPRDFVPKGIG.NRDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVVWVAKDGAINKPTT...LGSRGA...NNESRALRFDGK..VPGEFQLE.VNQ.......-SRDNSRSRS.QSRSR.............--SRNGSQSRGRQQSNNKKD..............................--DSVEQ..AVLAALKKLGVNTEKQQq..................rSRSKSKERSNSKIRDTT................PKNKNKHTWKRTAGKG..-DVTRFYGTRSGSA...NFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSK...........EDGD.QI.........EVTFTHKYHLPKDDPKTEQFLQQINAYARPS.........EVAKEQRKIKSRPK........SAERSEQ------evvpds...................
A0A0U1WHF1_9ALPC/169-393             ..................nn---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.--T.......NSRDNSNNRG.KSQSR.............NSSRNRGQQRNNNQQRQGTGaa..........................gnGTADLAA..AIVLALEKAGLTRETEKapkk...........esannNKKSESRASSPAPAQSK................KDQLGKVMWKRNPDPS..FNVTQCFGPRSVYQ...NFGDEDAIKNGVKAKHFPSWAELTPTPAALLFGSEVITV...........EDGD.DI.........VIQYNYQMRVPKTMAALQTFLPQVGAYANGD.........NESESGDQPGASAA........AAAAPEPPALPPK.........................
NCAP_CVP67/52-416                    ..............qqpsgg-----TVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPSTEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADINTPA..dIVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RAPNR.............-APSAGSRSRANSGNRTSTP..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnpdePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNQNLNAYqhqedgmmnISPKPQRQRGQKNG........QVENDNV------svaapk...................
NCAP_SARS/40-392                     .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
#=GR NCAP_SARS/40-392          SS    .................XXX--X--S-SS-B-SB-EEEE-SS-S-----TT--S---TTS-GGG-EEEEEEE--.EEE-TTT-EEE---EEEEEETTSSTTTTS-TT---........TTEEEEE-TT-BSS--T..TTS-B-T..TT---B-----TT---STTEE--.---......S--XXXXXXXX.XXXXX.............XXXXXXXXXXXXXXXXXXXX.............................XXXXSXXX..XXXXXXXXXXXXXXXXX....................XXXXXXXXXXSXCGCGS................----SSXGGGXXXBTT..SXHHHHHXXBSSSTTSBSBXXHHHHHHGGGSTTHHHHHTTSXXHHHHHHHSEEEEE...........EETT.EE.........EEEEEEEEEEXTTSTTHHHHHHHHHHHBTGG.........GGSXTTXXXXXXXXXX....XXXXXXXXXXXXXX-X........................
S5YAG0_9ALPC/7-382                   ...................a-KNNRRGRMEYSYFAPLIINSDQPIWKVLPNNAVPVGKG.GKDEQIGYWNEQPR..WRMRKGQRVDVASKWHFYYLGTGPHSEEQYRKRI........DGVYWVAVNGAKTSPTG...LGTRSA...KTKPLELKFNTK..IPKEVEFV.EPTs....pgSSRANSRSQS.RGGSKsr........nnsPRRGNQSKSRNSSKNRGGDNrsrs.....................ssgtrDQDAIVA..AVKAALLGLGLGTDSNSgasgk.........askansGTSTPKPKPAATPKSPSt..............pKSQLERPEWKRVPDSD..CSVEQCFGPRGGFK...NFGSADFVQYGVAAKGYPQAAALTPTSAALLFGGNVQVQ...........ELSD.DI.........EITYTYKMTVPKSDKNLEVFLSNVNAYKEAK.........PQREPKKKKDRSSR.......pPT-----------papsapvasgnaep...........
H9BZY3_9BETC/56-416                  ...............qpnsg-----SVVPHYSWFSGITQFQKGKEFQFVQGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGAEYGDDI........EGVVWVASQQADTKTTA..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RSQSR.............-----GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTAGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ........AQEKKD-------evdnvsvakpk..............
A0A0U2UGH8_9ALPC/23-360              ...................s-RGRKSNNIPPSFFNPITLQQGAKFWNLCPRDFVPKGIG.NRDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVVWVAKDGAMNKPTT...LGSRGA...NNESKALKFDGK..VPGEFQLE.VNQ......sRDNSRSRSQS.RSWSR.............--NRSQSRGRQQSNNKKDDS..............................----VEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKDRSNSKTRDTT................PKNENKHTWKRTAGRG..-DVTRFYGTRSISA...NFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSK...........EDGD.QI.........EVTFTHKYHLPKDDPKTEQFLQQINAYTRPS.........EVAKEQRKRKSRSK........SAERSEQE-----vvpda....................
A0A0U1WHF5_9ALPC/13-196              ...................a-ARGRSGRVPFSFYMPVINNSSQPFYKVMPQNAVPKGQG.NKDQQIGYWNEQVR..WRMVKGTRKDLPSKWHFYYLGTGPHADLKFRQRQ........QGVFWVAKEGAKAEPTG...LGTRGR...NAELTTPIFNPG..LPDSIEIV.DQY.......-SRPNSRASS.RARSQsn........dqgNRSRSQSNNRAQSNNRSQSR..............................-------..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------grqnqnqnnqpt.............
A8JNZ6_9ALPC/13-358                  ..................ae--SRGRKRIPLSLFAPLRVTDGKNFWNVMPRNGVPTGRG.NPDQQIGYWVEQKR..WRMQKGQRKDQPSNWHFYYLGTGPHADAPFRKRI........QGVHWVAVDGAKTSPTG...LGVRNR...NKEPATPQFGFQ..LPADVTVV.EAT.......-SRSASRSQS.RSRNQ.............----SQSRSGAQTPRVQQSS..............................QAVDIVA..AVKQALADLGIASSQSKs.................qsGKNTPKPRSRAVSPAPApk............paRKQMDKPEWKRVPNSE..EDVRKCFGPRSASR...NFGDSDLVQHGVEAKHFPTIAELLPTQAALAFGSEITTK...........EAGD.FV.........EVTYHYVMKVSKTDKNLPRFLEQVAAYSKPS.........QIRRSQSQQDLN--........-------------vdapaftpappatpvsr........
A0A0U1WJZ1_SARS/40-392               .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKV..YNVTQAFGRRGPEQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
A0A0K1YZZ7_SARS/39-391               .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPQGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIIWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGTSPARIASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPDQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
H9BR04_9NIDO/1-318                   ...................m-ATPSVPTTDASWFQVLKAQNKKATHPQFRGNGVPLNSAiKPAENHGYWLRYTR..QKPGGT---QIPPSYAFYYTGTGPRGNLKYGELPpnd.tqatTRVTWVKGPGADTSIKP..hVAKRNPnnpKHQLLPLRFPTGdgPAQGF---.---.......RVDPFN-ARG.RPQER.............-----GSGPRSQSANPRGTN..............................-------..-----------------....................--NQPRKRDQSAPAAVR................-RKTQHQAPKRTLPKG..KTISQVFGNRSRTG..aNVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESN...........FQAG.AI.........TLTFSYSITVKEGSPDYERLKDALNTVVNQT.........YEPPTKPTKDKKPE........KQDQSAKPKQQK-kpkk.....................
B1PHJ2_9ALPC/10-359                  ...................n-SRGRSGRTPLSYYAPLRVADDKLFLKSMPGNGVPKGMG.EKSEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTK...LGTRNR...NQQLRIPTFDFT..LPDSLEIV.NSD.......-SRPASRSNS.RSQSKs...........aNQSRSNSQVREQSGNRTPKNasq........................kknQQEDLVA..AVREALKGLGFQQSRSS...................sGRSTPSRAKSPARQSKK................--QLDKPEWKRVPNRT..ENATTCFGQRSVEK...NCGSASVLAMGVETPNFPRIAELIPTQAALFFGSRVSTK...........ENSD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKQKAKTEe......tPQLNPTAPAFT--hp.......................
B6VDY2_THCOV/1-166                   ...............msapv-----VPTTDASWFQVLKAQNKKAIHPQFRGDGVPLNSAiKPQENHGYWLRYNR..QKPGGA---AIPPSYAFYYTGTGPRGNLKFGEYPpnd.skdtSRITWVKAKGADTSIKP..hVAKRNPnnpKHALLPLRFPSGdgPAAGFRVDpFNT.......RGRQLERA--.-----.............--------------------..............................-------..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------pgprsmsmdtrpa............
R4WKE3_9BETC/52-420                  ...............qpagg-----NVVPYYSWFSGITQFQKGKEFQFAEGQGVPIAPGiPSTEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKVQYGTNI........DGVFWVANKQADVNTPA..dVVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSVSNSRSTS.RASSR.............-ASSAGSRSRANSGTRTSTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGAEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgsfdePQKD.VY.........ELRYNGAIRFDSTLPGFETIMKVLNENLNAY.........QQQDDGTNMSPKPQ........RQRGQ--------kkggenedvsvaapksrvqqnk...
T2BBK0_MERS/31-388                   ...................p-KPRAAPNNTVSWYTGLTQHGK-VPLTFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-IKQLAPRWYFYYTGTGPEAALPFRAVK........DGIVWVHEHGATDAPST...FGTRNP..nNDSAIVTQFAPGtkLPKNFHIE.GTGgnsqsssRASSVSRNSS.RSSSQ.............-GSRSGNSTRGTSPGPSGIG..............................-AVGGDL..LYLDLLNRLQALESGKV....................KQSQPKVITKKDAAAAK................----NKMRHKRTSTKS..FNMVQAFGLRGPGDlqgNFGDLQLNKLGTEDPRWPQIAELAPTASAFMGMSQFKLT...........HQNN.DDhgn...pvyFLRYSGAIKLDPKNPNYNKWLELLEQNIDAY.........KTFPKKEKKQKAPK........EESTDQMS-----eppkeqrv.................
A0A0U1UZD6_SARS/38-390               ................kqrr--PQGLPNNTASWFTALTQHGK-EGLKFPQGQGVPINTNsGRDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......sGSQASSRSSS.RSRGN.............SRISTPGSSRGNSPARVASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSASEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPDQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKK........KTDEAQP------lpqrkkqpt................
C0KZ04_9BETC/55-416                  ..............tqpnsg-----SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI........EGVFWVANSQADTNTRS..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RSQSR.............-----GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ........AQEKKD-------evdnvsvakpk..............
A0A0F6WGG4_9GAMC/23-339              .............kppkvgs-------SGNASWFQSLKAKKLNSPPPTFEGSGVPDNENlKSSQQHGYWRRQAR..YKPGKGGRKPVPDAWYFYYTGTGPFADLKWGQPH........DDIVWVAVDGADVDVKS..gQGTRDP..dKFDQFPLRFAEG.gPDDNFRWD.FIPvg..grgRSGRSSVATS.RESSR.............------PGSREGSRGRRQMG..............................PNEDLIA..RAARIIEE------Q--....................-QKRGGRITKAKANEMA................----ERRYCKRTLAPG..KTVDQVFGTRQKGRe.rNFGDDRMVEEGIRDGRTTAMLNLVPSSHAMLFGSNVQAK...........LQPD.GL.........HVTFSFTTVVPRDDPQFDNYRQICDECVDGV.........GTRPKDEP------........-------------kp.......................
A0A0U1WJU3_9ALPC/9-395               ...................e-PRGRSGRVPLSLFAPLRTTDGTPFFRAMPQNGVPKGFG.NKDQQVGYWNEQVR..WRMKKGQRQNLPSNWHFYYHGTGPHGDAKYREKI........AGVYWVAKQGTKVAPTD...LPTRKR...NQPTIDPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS.RSQSS.............----GGSKSRANSQSRDNSNqqktpkgstnnsrsnsqersqkskkgkggsNQDDLVA..AVRQALMGLGFQPQGNSgknggk........ksapssGKSTPKDSRSKSPARPQs..............tKKQLDKPEWKRVPNKS..ESVTACFGPRDVSR...NFGTKGLVAEGVEYSHFPQIAELLPTQAALAFGSRVEVK...........DFKD.EV.........EIKFHYKMNVPKENKNLQVFLEQVDAYLDPS.........REDKPKEQRKPKEKrke..dtpAQLNP--------aapvftpp.................
NCAP_CVPPU/23-360                    ...................s-RGRKNNNIPLSFFNPITLQQGSKFWNLCPRDFVPKGIG.NRDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVVWVAKDGAMNKPTT...LGSRGA...NNESKALKFDGK..VPGEFQLE.VNQ.......-SRDNSRSRS.QSRSR.............SR--NRSQSRGRQQFNNKKD..............................--DSVEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKERSNSKTRDTT................PKNENKHTWKRTAGKG..-DVTRFYGARSSSA...NFGDTDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSK...........EDGD.QI.........EVTFTHKYHLPKDDPKTGQFLQQINAYARPS.........EVAKEQRKRKSRSK........SAERSEQD-----vvpda....................
B1PHJ9_9ALPC/10-364                  ...................n-SRGRSGRIPLSYYAPLRVADDKLFLKSMPGNGVPKGMG.GKAEQIGYWTEQRR..WRMNKGQRKDLPSNWHFYYLGTGPHADLKFRERQ........VGVFWVAKQGSKTEPTN...LGTRNR...NQQLRIPEFDFT..LPDSLEVV.NSD.......-SRPASRSDS.RSQSKs...........nNQSRSNSKARDQSGTRTPKNasqnq....................kpkknQQEDLVA..AVREALKGLGIQQSRSS...................sGKSTPARSKSPARPSNK................-KQLDKPEWKRVPNRT..ENATTCFGQRSVER...NCGSASVVAMGVEAPNFPQIAELIPTQAALFFGSRVSTK...........EVGD.TV.........EIKYHYKMSVPKTNPNLPYFLQQVNAYLDPN.........SDQPIPKKPKAKSEe......vPQLNPAAPVFTP-p........................
A0A240FW20_9ALPC/18-354              ...................t-KNGSKVEVELSAWDPIIIQNNKNIQDVLPRTSVPK--GlPSGHEIGYWYKGPE.rYRFTRGEKVPLDPKWYFYPLGHGPAANKKWNSKV........EGVFWVARDGASIEKVP..dFEPRKK...GAEAKRVRLPGK..APANVYFT.TTS.......----ASRSQS.RDNSR.............AASRSGSKSRIQSRSPSAER..............................GHVDIKL..AVLEALKDLGIGQDTKKkssk...........saaasGNNTPKQESSPKVQRKQ................---IERLRHKRVPTGK..ENITVCFGPRGPEQ...NFGSDEIVNGGAQGKKVAQLLENVPGPSALLFGGKVEQI...........GKANgKV.........AVQYTYVAELD-DNEEVKRFLDLIDAYKKPT.........TANSI---------........-------------nsvlnpqatafapp...........
H9BR39_9NIDO/1-322                   ...................m-ATPTVPVADASWFQPLKAQNKKNTTPSFKGDGVPINTSlDHKAAHGYWLRFNR..QKPGGA---QLPPSFAFYYTGTGPRGNLKYGEFPpne.skgnSRITWVHVKDADTSIKP..kVAKRNPqnpKHALLPLRFPPGdgPAQGF---.---.......RIDPFQPQRG.RGMER.............-----GPTQRSQSANPRQND..............................-------..-----------------....................--AGNRRRAASAPGTNR................SKTHTHAIPKRTLQKG..KTISAVFGKRSPAG..sNVGSADTEKAGMADGRIMALARQVPGVQEMLFAGHLSHQ...........FQAD.AV.........TLTWTYSITIKSDSSDYDRIKQALDTVVDQT.........YEAPIKEKKQPAKQq......pKQDKPKPQ-----rspkkqdk.................
NCAP_SARS2/22-391                    dstgsnqngersgarskqrr--PQGLPNNTASWFTALTQHGK-EDLKFPRGQGVPINTNsSPDDQIGYYRRATR.rIRGGDGKMKDLSPRWYFYYLGTGPEAGLPYGANK........DGIIWVATEGALNTPKD..hIGTRNP..aNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRNS.............SRNSTPGSSRGTSPARMAGN.............................gGDAALAL..LLLDRLNQLESKMSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKA..YNVTQAFGRRGPEQtqgNFGDQELIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYTGAIKLDDKDPNFKDQVILLNKHIDAY.........KTFPPTEPKKDKKK........KADETQAL-----pqrqkkqqt................
#=GR NCAP_SARS2/22-391         SS    XXXXXXXXXXXXXXXXXXXX--XXXXSXXXBSSB--EEE-SS-S-----TT------TTS-GGGGEEEEEEE--.EEE-TTSSEEE---EEEEEETT-STTTTS-TT--B........TTEEEEEBTT--SS--T..TT--B-T..TTS--B-----TT--B-TTEEET.TXX......XXXXXXXXXXX.XXXXX.............XXXXXXXXXXXXXXXXXXXX.............................XXXXXXXX..XXXXXXXXXXXXXXXXX....................XXXXXXXXXXXXHHHHH................----TSXGGGXXXBTT..BXHHHHHXXXXSSTTSXXBXXHHHHHHGGGSTTHHHHHTTSXXHHHHHHHSEEEEE...........EETT.EE.........EEEEEEEEEXXTTSTTHHHHHHHHHHHBTGG.........GGXXXXXXXXXXXX........XXXXXXXX-----XXXXXXXXX................
A0A023YAJ4_MERS/32-386               ...................p-KPRPAPNNTVSWYTGLTQHGK-VPLSFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-TKQLAPRWFFYYTGTGPEANLPFRAVK........DGIVWVHEEGATDAPSS...FGTRNP..nNDPAIVTQFAPGtrLPKNFHIE.GTGgnsqsssRASSASRGSS.RSSSR.............-GARSGNSSRSASPGPAGIGa............................vGGDASSI..LYLSLLKRLEDLEAGKS....................-KSAPKVVTKKDAAAAK................----NKMRHKRVATKS..FNMVQAFGRRGPGDlqgNFGDLQLNKLGTEDPRWPQIAELAPSASAFMGMSQFKLT...........HQSN.DAdgs...pvyFLRYSGAIKLDPKNPNYQKWMELLEANIDAY.........KSFPVKEKKQKADD........NKQDST-------edsgd....................
A0A0U1WJZ8_BCHK4/31-397              ...................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS.RSNSR.............-GGRSTSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK................----NKMRHKRVATKS..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLEANIDAY.........KTFPKKERKPKTTEdgavssssA------------sqmedvdakpqrkpk..........
NCAP_CVHOC/52-422                    ................qqps---GGNVVPYYSWFSGITQFQKGKEFEFVEGQGPPIAPGvPATEAKGYWYRHNRgsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVYWVASNQADVNTPA..dIVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RTSSR.............-ASSAGSRSRANSGNRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKHTAKEVR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnpdePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDGMMNMSPKPQ........RQR----------ghkngqgendnisvavpksrvqqnk
#=GR NCAP_CVHOC/52-422         SS    ................XXXX---XXSS-----SB--EEE-STT------TT------TT--GGG-EEEEEEE-------ST--------EEEEEETT-GGGTTS-TT---........TTEEEEE-TT--TTS--..S-----S..TTS--B-----TT----TTEEET.T-X.......XXXXXXXXXX.XXXXX.............-XXXXXXXXXXXXXXXXXXX..............................---XXXX..XXXXXXXXXXXXXXXXX....................-XXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.........XXXXXXXXXXXXXX........XXX----------XXXXXXXXXXXXXXXXXXXXXXXXX
A0A0U1WJX5_SARS/1-75                 ....................---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------.-----.............--------------------..............................-------..-----------------....................-----------------................----------------..--------------...--------------------------------MSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKK........KTDEAQP------lpqrkkqptv...............
A3EXC8_BCHK4/31-397                  ...................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS.RSNSR.............-GGRSTSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK................----NKMRHKRVATKG..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLESNIDAY.........KTFPKKERKPKTTEdgavasssA------------sqmedvdakpqrkpk..........
A0A125R5H7_9ALPC/23-355              ...................s-RGRKNNDIPFSYYNPITLEPGSKFWNVCPRDFVPKGIG.NKDQQIGYWNRQFR..YRIVKGQRKELPERWFFYFLGTGPHADAKFKDKI........DGVFWVARDGAMNRPTT...LGTRGT...NNESKPLKFDGK..IPPQFQLE.VN-.......RSRNNSRSGS.QSRSV.............------SRNRSQSRGRQQSN.............................nQNTNVED..TIVAVLQKLGVNTESNQ....................-RSRSKSRTRGESRDTT................PKNANKHTWKKTAGKG..-DVTNFYGARSASA...NFGDSDLVANGNAAKCYPQIAECVPSVSSILFGSQWSAE...........EDGE.QV.........KVTLTHTYHLPKDDAKTSQFLEQIDAYKRPS.........AVAKDQRARKSRSK........SADKK--------peelsvt..................
H9BR29_9NIDO/155-321                 ................drra---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......----------.-----.............--------------------..............................-------..--------------QSA....................EPQRPKQRERSRSAPSR................AAPKQHAIPKRVLLKG..KTISGTFGKRSPAK..aNVGSPDTEKTGLGDPRLMALMRFVPGTQELLFAGHLKHK...........MQPE.GV.........QLTFTYDITVKRDNKDFDRIVEALNSVVDMVyepegeirkDQQSKKDTQPKKKA........EKKTPTNPQKQP-d........................
E0ZN56_BCHK9/53-406                  ...................e-KPKAAPPQNVSWFAPLVQTGK-QDLRFPRGQGVPISQGvDPIYNHGYWVRTQR..TFQKGGKPVSANPRWYFYYTGTGRYGDMRYGTKN........PDIYWVGEEGANVNRVG..dMGTRNP..nNDAAISVQLADG..IPKGFYAE.GRN.......-SRGNSRNSS.RNSSRa...........sSRGGSRPGSRGASPGRATPSg............................sGAEPWMA..YLVSKLETLEAKVNGTK...................sETKAPVQVTKSAAAENA................----KKLRHKRTPHKG..SGVTMNYGRRGPGDlegNFGDQTMLKLGVDDPRFPAVAQMAPNVASFIFMSHLSTR...........EEND.AL.........WLQYKGAIKLPKDDPNYEQWTKLLAENLNAY.........KDFPPPEPKKDKKK........KEE----------issdtvvfedastgtdq........
E0ZN64_BCHK9/53-400                  ...................e-KPKAAPPQNVSWYAPLVQTGK-ADLRFPRGEGVPISQGvDPIYQHGYWTRTQR..SFQKGGKTVQANPRWYFYYTGTGRYADLRWGQKN........PDIVWVGEEGANINRVG..dMGTRNP..nNDAAIAVQLGNG..IPKGFYAE.GRG.......-SRGNSRNSS.RNSSRa...........sSRSSSRPNSRGASPGRNTPNp...........................gsGSEPWMA..YLVSKLENLEAKVNGTK...................pETKAPVQVTKNAAAENA................----KKLRHKRTPHKG..SGVTMNFGRRGPGDlegNFGDQTMLKLGTDDPRFPAAAQMAPNVAAFLFMSHFSTR...........EEGD.AL.........WLNYKGAIKLPKDDPNYNQWVKVLEENLNAY.........KDFPPPEPKKDKKK........KEEVSA-------etvvfed..................
NCAP_CVM2/50-413                     .............ttqpnag-----SVVPHYSWFSGITQFQKGKEFQFAQGQGVPIASGiPASEQKGYWYRHNRrsFKTPDGQHKQLLPRWYFYYLGTGPHAGAEYGDDI........EGVVWVASQQADTKTTA..dVVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RSQSR.............-----GPNNRARSSSNQRQP..............................-ASAVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILTKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTPSAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAIRFDSTLPGFETIMKVLTENLNAYqdq..agsvDLVSPKPPRRGRRQ........AQE----------kkdevdnvsvakpk...........
A3EXF5_BCHK5/30-395                  ...................t-KPRPAPNTTVSWFTGLTQHGK-QPLAFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVK........DGIIWVHENGATDAPSV...FGTRNP..aNDPAIVTQFAPGttLPKNFHIE.GTGgn..sqsSSRASSRSSS.RSSSR.............-NGRSNSNSRNASPAPHGVGd............................vVGAGTLS..VLLDLQKRLADLEAGKG....................-TKQPKVITKKDAQAAK................----QKMRHKRVATKG..YNVVQAFGMRGPGPlqsNFGDMQYNKLGTEDPRWPQIAELAPSASAFMSTSQFKVT...........HQSN.DEnge...pvyFLSYSGAIKLDPKNPNYNKWMEILDANIDAY.........KSFPKKERKQKPSGd......dA------------aiapatsqmedvpelppkqqr....
D9J207_9ALPC/25-357                  ...................s-RSRKNENIPLSFFNPITHTGNKKFWNVAPKDLVPKGKG.NKDQQVGYWNRQER..WRMQKGQKVQLPSRWFFYYLGTGPHQNAKFQERI........DGVYWVGKNGSKTVPTG...LGTRGS...NQESLDLQFDCA..VPAEFKLE.QNV.......NSRSNSRSRS.RGRSK.............------SNTRSNDNQSSSQD..............................----IAT..AVAAALAQMGFAPKETQ...................kNKSRSKSRDRAKSSERP...............vPKNENKHSWKKTPGKG..-DVETMFGKRSANS...NFGDAELVKDGSSHKNYPQLAEMVPSTGALVFGGKWEAT...........ESGD.DV.........IVTVNYSYKLSKNDPKTTAFIGQIGAYTKPS.........QVAKEQRSRSKSRE........RAATPVPTT----vsat.....................
A3EXJ4_BCHK9/54-404                  ...................e-KPKAAPPQNVSWFAPLVQTGK-QDLRFPRGEGVPISQGvDPVYLHGYWVRTQR..NFQKGGKTVQANPRWYFYYTGTGRHADLRWGQKN........PDLIWVGEDGANINRIG..dMGTRNP..nNDSAIPVQFGSG..IPKGFYAE.GRN.......-SRGNSRNSS.RNSSRa...........sTRGNSRANSRGASPGRNTPSg...........................gsNSEPWMA..YLVQKLEALETKVNGNK...................sETKAPVQVTKNAAAENA................----KKLRHKRTPHKG..SGVTANFGRRGPGElegNFGDLEMLKLGADDPRFPAVAQMAPNVAAFMFMSHFSTR...........DEED.AL.........WLNYRGAIKLPKSDPNFEQWTKLLEENLNAY.........KTFPPPAPKKDKKK........KEEASQ-------eiaifedast...............
B8Q8T3_SARS/40-392                   .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
V5TGZ7_9GAMC/26-352                  ..............qapalp------TSGNVSWFQAIKGRRAGEEGITFKGPGVPVNENvSKNQNHGYWIQRSR..TTPGG---KKLAPLYYFYYTGTGPRDQAKYGQDI........PYVTWVKGEGAKTSQLS..eAGSRDVn.kFPNAFPLIFPTGdgPDRGFFIE.RSR......sRSRSNSQADN.RSKSR.............ERSQSSDKPRKEDRGRSKSP..............................-------..---------AQKNP---....................--GSGGKITKEKAALMV................----SRAYGKRTIPPN..KSVDGVFGARDIEK...NFGDAEMIKKGMSDPRFTAALIPTPGPQAALFGSHVTLK...........EKPD.GL.........EITYKYRTLFPKTDERYEEVKHAYLSNVPLQ.........DGGQPLHSSGVQKK........LKS----------rsksrdrtddgvenpt.........
NCAP_BCHK5/30-392                    ...................t-KPRPAPNTTVSWFTGLTQHGK-QPLAFPPGQGVPLNANsTPAQNAGYWRRQDR.kINTGNG-TKPLAPRWYFYYTGTGPEANLPFRSVK........DGIIWVHENGATDAPSV...FGTRNP..aNDPAIVTQFAPGttLPKNFHIE.GTGgn..sqsSSRASSRSSS.RSSSR.............-NGRSNNSSRNASPAPHGVGd............................vVGAGTLS..VLLDLQKRLADLEAGKG....................-NKQPKVITKKDAQAAK................----QKMRHKRVATKG..YNVVQAFGMRGPGPlqsNFGDMQYNKLGTEDPRWPQIAELAPSASAFMSTSQFKVT...........HQSN.DEnge...pvyFLSYSGAIKLDPKNPNYNKWMEILDANIDAY.........KSFPKKERKQKPSG........DDAATAPAT----sqmedvpelppk.............
H6U5R4_9ALPC/168-404                 ..............nnqsrg---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......NSQNRGNNQG.RGASQn..........rgGNNNNNNKSRNQSKNRNQSNdrg........................gvtSRDDLVA..AVKDALKSLGIGENPDKlkqqqkp.....kqersdssGKNTPKKNKSRATSKER................-DLKDIPEWRRIPKGE..NSVAACFGPRGGFK...NFGDAEFVEKGVDASGYAQIASLAPNVAALLFGGNVAVR...........ELAD.SY.........EITYNYKMTVPKSDPNVELLVSQVDAFKTGN.........AKPQRKKEKKNKRE........TTQQ---------lneeaiyd.................
NCAP_BCHK4/31-397                    ...................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS.RSSSR.............-GGRSTSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK................----NKMRHKRVATKG..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLESNIDAY.........KTFPKKERKPKTTEdgavasssA------------sqmedvdakpqrkpk..........
K4K1V4_9ALPC/13-381                  ...................k-PRGRSGRVPLSYYSPVMIDGDQPFWKVMPTNAVPTGMG.DKNQQIGYWNEQPR..WRMVKGQRKELQSKWHFYYLGTGPQEDARYRQRI........EGVFWVAVQGSKTDPTG...LGTRRK...GQNLISPKFAVK..IPSNVVVV.EETsr..ppsRSQSNSRPQS.RNNSRp...........qSKNNSQNNSRDNSRAPSRPRsrans...................tsssanDAVDIVA..AVKQALKELGVTPEKKNqekq...........kksnsGSNTPKEAATSRQKSSPs.............tpRKQLERPEWKRVPNKE..ENVIACFGPRDTLH...NFGDQKLIAEGVQAPHYPQLAELVPTPAALLFGGEVSTR...........ERGD.EV.........EIMYVYKMKVHKSNKDLPSFLQQVSAYAQAP.........---DATTTEKATVQ........PLLNPTAPDFKP-a........................
A0A0U1UZD2_9ALPC/9-370               ....................EKRGRSGKVPLSYYNPVIVSGDKPFWKVMPNNAVPKGKG.NKDQQIGYWNEQPR..YRMVRGTRKDLPSKWHFYYLGTGPHAEAKFRTRT........DGVFWVAVQGSKTEPTG...LGTRKR...NAELVNPEFAIQ..LPAAIEIQ.ENTvsr.gnsRNQSSNRDRS.QSGNRsq........ndqKQGNQNQKSRSNSQSRKGNQns..........................ndSAVDIVA..AVKQALKELGVTNESNKkg...............knsGTTTPKEQRSKSPVRSPt.............vqKKQLERPPWKRVPNST..EDVTKCFGVRDTYR...NFGDADLVRNGIDAKHYPQLAELVPTPAAILFGGEVVTK...........EVGS.DV.........EITYIYKMKVPKTDKNLAAFLKQVSAYSQPS.........QAAEV---------........-------------psqlnpaavvfqplaedeq......
NCAP_BC512/8-363                     ...................p-RGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMG.GKDQQIGYWVEQQR..WRMRRGDRVDLPSNWHFYFLGTGPHSDLPFRKRT........DGVFWVAIDGAKTQPTG...LGVRKS...SEKPLVPKFKNK..LPNNVEIV.EPT.......-TPNNSRANS.RSRSRggqs.....nsrgNSQNRGDKSRNQSRNRSQSNdr.........................gsdSRDDLVA..AVKKALEDLGVGAAKPKgk...............tqsGKNTPKNKSRSGSVQRA................-EAKDKPEWRRTPSGD..ESVEVCFGPRGGTR...NFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVATK...........EMAD.GV.........EITYTYKMLVPKDDKNLEIFLAQVDAYKLGD.........----PKPQRKVKRS........RTPTPKPAT----epvydd...................
NCAP_IBVB/23-354                     .............kppkvgs-------SGNASWFQAIKAKKLNTPPPKFEGSGVPDNENiKPSQQHGYWRRQAR..FKPGKGGRKPVPDAWYFYYTGTGPAADLNWGDTQ........DGIVWVAAKGADTKSRS..nQGTRDP..dKFDQYPLRFSDG.gPDGNFRWD.F--.......--IPLNRGRSgRSTAA............sSAAASRAPSREGSRGRRSDS..............................-GDDLIA..RAA----KIIQDQQK--....................---KGSRITKAKADEMA................----HRRYCKRTIPPN..YRVDQVFGPRTKGKe.gNFGDDKMNEEGIKDGRVTAMLNLVPSSHACLFGSRVTPK...........LQLD.GL.........HLRFEFTTVVPCDDPQFDNYVKICDQCVDGV.........GTRPKDDEPKPKSR........SSSRPATRGN---spa......................
#=GR NCAP_IBVB/23-354          SS    .............XXXXXX---------S-B-SB--EEESSSS-----EES------TTS-GGG-EEEEEEEEE..EEEESSSEEEEEEEEEEEETT-STTTTS-TT---........TTEEEEE-TT--TT---..S---B-T..TT---B----TT-.EE-TTEE--.---.......-----XXXXXXXXXXX............XXXXXXXXXXXXXXXXXXXXX..............................-XXXXXX..XXX----XXXXXXXX--....................---XXXXXXXXXHHHHH................----SSXGGGXXXXTT..XXCHHCCXSXXSSST.TXBXXHHHHHHGGGSHHHHHHCTTSXXHHHHHHCSEEEEE...........EETT.EE.........EEEEEEEEEEXTTSTTHHHHHHHHHHHBXXX.........XXXXXXXXXXXXXX........XXXXXXXXXX---XXX......................
NCAP_CVPIA/52-422                    ..............qqpsgg-----TVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHNRrsFKTADGNQRQLLPRWYFYYLGTGPHAKHQYGTDI........DGVFWVASNQADINTPA..dIVDRDP..sSDEAIPTRFPPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RAPNR.............-APSAGSRSRANSGNRTSTP..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnpdePQKD.VY.........ELRYNGAIRFDSTLSGFETIMKVLNQNLNAYqhq..edgmMNISPKPQRQRGQ-........-------------kngqvendnisvaapksrvqqn...
NCAP_CVMA5/55-416                    ..............tqpnsg-----SVVPHYSWFSGITQFQKGKEFQFAEGQGVPIANGiPASEQKGYWYRHNRrsFKTPDGQQKQLLPRWYFYYLGTGPHAGASYGDSI........EGVFWVANSQADTNTRS..dIVERDP..sSHEAIPTRFAPGtvLPQGFYVE.GSG.......RSAPASRSGS.RSQSR.............-----GPNNRARSSSNQRQP..............................-ASTVKP..DMAEEIAALVLAKLGKD....................-AGQPKQVTKQSAKEVR................QKILNKPRQKRTPNKQ..CPVQQCFGKRGPNQ...NFGGSEMLKLGTSDPQFPILAELAPTVGAFFFGSKLELV...........KKNS.GGadeptkdvyELQYSGAVRFDSTLPGFETIMKVLNENLNAYqkd...ggaDVVSPKPQRKGRRQ........AQEKKD-------evdnvsvakpk..............
#=GR NCAP_CVMA5/55-416         SS    ..............XXXXXX-----XXX----SB--EEE-STT------TT------TT--GGG-EEEEEEE-S-EEE-SSS-EEE---EEEEEETT-STTTT--TT---........TTEEEEE-TTS-TTS--..SS----T..TT---B-----TT----TTEEET.T-X.......XXXXXXXXXX.XXXXX.............-----XXXXXXXXXXXXXXX..............................-XXXXXX..XXXXXXXXXXXXXXXXX....................-XXXXXXXXXXXXXXXX................XXXXXXXXXXXXXXXX..XXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...........XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX........XXXXXX-------XXXXXXXXXXX..............
A0A088DI26_9BETC/35-377              ...................r-KPRPAPQNNVSWFTPLTQHGK-QALTFNPGQGVPLNANdDPDSRIGYWRRNIR..TVTKNGKPQKLDPRWYFYYLGTGPEQNLKYLQQK........DGIVWVAAHGALNVPVK..tVGTRNP..aNDQAIVAAFAPGteLPKGFYVE.GSR......sTSSASSAASS.RSNSR.............--SRNSSLSRSSSPGRGLPPa...........................tdPNGVLAA..LLLTKLEALDAKVNGPK....................---QPPVVTKKTAAEIA................----AKPRQKRVAHKG..YNVNAAYGRRGPGPyqgNFGTQEFNKLGTDYPKWPQIAQLAPTPSAFFGMSRFAVQ...........KNDD.GT.........WLTYHGHIKMDESDPNFQVWMTELQQNIDAY.........KNFPQKEEKKSRKP........KTKN---------vdmapqdv.................
A0A0D5Z9E4_9NIDO/1-318               .................maa---PVVPTTDASWFQVLKAQNKKSTHPQFRGNGVPLNSAiKPVENHGYWLRYTR..QKPGGT---PIPPSYAFYYTGTGPRGNLKYGELPpnd.tpatTRVTWVKGSGADTSIKP..hVAKRNPnnpKHQLLPLRFPTGdgPAQGF---.---.......RVDPFN-ARG.RPQER.............-----GSGPRSQSVNSRGTG..............................-------..-----------------....................--NQPRKRDQSAPAAVR................-RKTQHQAPKRTLPKG..KTISQVFGNRSRTG..aNVGSADTEKTGMADPRIMALARHVPGVQEMLFAGHLESN...........FQAG.AI.........TLTFSYSITVKEGSPDYERLKDALNTVVNQT.........YEPPTKPTKDKKPD........KQDQSAKPKQQK-kpkk.....................
Q0PL08_9ALPC/23-360                  ...................s-RGRKSNNIPLSFFNPITLQQGSKFWNLCPRDFVPKGIG.NRDQQIGYWNRQTR..YRMVKGQRKELPERWFFYYLGTGPHADAKFKDKL........DGVVWVAKDGVMNKPTT...LGSRGA...NNESKALRFDGK..VPGEFQLE.VNQ.......-SRDNSRSRS.QSRSR.............SRNRSQSRGRQQSNNKKDDS..............................----VEQ..AVLAALKKLGVDTEKQQq..................rSRSKSKERSNSKTRDTT................PKNENKHTWKRTAGKG..-DVTRFYGARSSSA...NFGDSDLVANGSSAKHYPQLAECVPSVSSILFGSYWTSK...........EDGD.QI.........EVTFTHKYHLPKDDPKTEQFLQQINAYARPS.........EVAKEQRKRKSRSK........SAERSEQE-----vvpds....................
A0A1B3Q5X0_9BETC/50-395              ...................e-KPRAAPMQNVSWFAPLVQTGK-SDLKFAHGEGVPVSQGvDGTYQHGYWLRTQR..NFTKGGKSLTANPRWYFYYTGTGRYADLRFGTRQ........PDILWVGRNGANVNKVG..nMGTRNP..nNDSAIPVQLPEG..IPKGFYAE.GT-.......RSRNSSRSSS.RGSSRn...........tSASNSRANSRASSPGRNLPPq............................aGSEPWMA..YLVQKLQALESKVDGKK....................PEKTPQKVTKQGAANMA................----DKLRHKRTPHKG..SGVTQNFGRRGPGDlegNFGDLEMLKLGTDDPRFPAAAQMAPTAAAFLFMSHFDTR...........EEND.AT.........WLNYRGAIKLPKDNPNYATWMKLLKENVDAY.........KDFPQTPERETKKK........KKDV---------vvedvtvve................
Q0Q099_9ALPC/9-395                   ...................e-PRGRSGRVPLSLFAPLRTTDGSLFFRAMPQNGVPKGFG.NKDQQVGYWNEQVR..WRMKRGQRQNLPSNWHFYYHGTGPHADAKFREKI........QGVFWVAKQGSKVAPTD...LPTRKR...NQPTIEPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS.RSQSS.............----GGSKSRANSQSRDNSDqqktpkgstnnsgsnsqersqkskkgkgstDQDDLVN..AVRQALMGLGFQPQGNSgknggk........ksapssGKSTPKDSRSKSPARPQs..............tKKQLDKPEWKRVPNKS..ESVTACFGPRDVSR...NFGTKGLVAEGVEYSHFPQIAELLPTQAALAFGSRVEVK...........DFKD.EV.........EIKFHYKMNVPKENKNLQVFLDQVDAYLDPS.........REEKPKEQRKSKEKkke..eapAQLN---------paapvftpp................
E0XJ00_9BETC/37-389                  ................kqrr--PQGPPNNTASWFTALTQHGK-EGLSFPRGQGVPVNTNsTRDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEAALPYGANK........DGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVIQLPQGttLPKGFYAE.GSR......gGSQASSRSNS.RSRGN.............SRNSTPSSSRGSSPARMAAG..............................GDTALAL..LLLDRLNQLESKVSGKT....................-PQQSQVVTKKTAAEAS................----KKPRQKRTATKA..YNVTQAFGRRGPEPtqgNFGDQELIRLGTDYKNWPQIAQFAPSASAFFGMSRIGME...........VTPT.GT.........WLTYNGAIKLDDKDPNFKDQVILLNKHIDAY.........KTFPPTEPKKDKKK........KADEVQS------lpqrqkkqatv..............
B2BW44_9GAMC/26-352                  ..............qapalp------TSGNVSWFQAIKGRKAGEEGITFKGPGVPVNENvSKNQNHGYWIQRSR..TTPGG---KKLAPLYYFYYTGTGPRDQAKYGQEI........PYVTWVKGDGAKTSQLS..eAGSRDVn.kFPNAFPLIFPTGdgPERGFFIE.RSR......sRSRSNSQADN.RSKSR.............ERSQSSDKPRKEDRGRSKSP..............................-------..---------AQKNP---....................--GSGGKITKEKAALMV................----SRAYSKRTLPPN..KPVDQVFGSRDTEK...NFGDAEMIKKGMSDPRFTAALIPTPGPQAALFGSHVTLK...........EKPD.GL.........EITYKYRTLFPKTDERYEEVKHAYLSNVPLQ.........DGGQPLHSSGVQKK........LKS----------rsksrdrtddgvenpt.........
U5LQW6_9BETC/31-382                  ...................p-KPRPAPNVSVSWYTGITQHGK-QPLAFPAGQGVPLNANsTPKQNAGYWRRQDR.kLNTGNG-VKQLAPRWYFYYTGTGPEANLPFRTVK........DGIYWVWEEGASEAPSD...FGTRNP..aNDAAIVTQFAPGtqLPKNCHIE.GTGgnsqsssRASSASRNSS.RSNSR.............---GSQPGSRSHSPGSVGPS..............................--DASAL..LYLELAKRLEALEAGKS....................-KSAPKVITKKDAADAK................----KKMRHKRVATKA..YNPTQAFGLRGPGDlqgNFGDLKYCKEGVDDPRWPQMAELAPSASAFLSMSQLKLV...........HHSN.DTdnk...pvyMLRYSGAIKLDPKNPNYSKWLEILEGNIDAY.........KNFPKKEKKQKQSQ........IKQEAEDP-----ewdstd...................
D2E275_SARS/40-392                   .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGPDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAATVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKQ..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKKkt....deAQPLPQRQKKQP-t........................
NCAP_BCHK9/54-399                    ...................e-KPKAAPPQNVSWFAPLVQTGK-AELRFPRGEGVPVSQGvDSTYEHGYWLRTQR..SFQKGGKQVLANPRWYFYYTGTGRFGDLRFGTKN........PDIVWVGQEGANINRLG..dMGTRNP..sNDGAIPVQLAGG..IPKGFYAE.GRG.......-SRGNSRSSS.RNSSRa...........sSRGNSRASSRGASPGRPAAN.............................pSTEPWMA..YLVQKLERLESQVSGTK...................pATKNPVQVTKNEAAANA................----KKLRHKRTAHKG..SGVTVNYGRRGPGDlegNFGDREMIKLGTDDPRFAAAAQMAPNVSSFLFMSHLSTR...........DEDD.AL.........WLHYKGAIKLPKDDPNYEQWTKILAENLNAY.........KDFPPTEPKKDKKK........KEETAQD------tvifed...................
A0A0U1WJV4_9ALPC/9-395               ...................e-TRGRSGKVPLSLYAPLRTTDGAPFFRAMPGNGVPTGMG.KKDQQVGYWNEQVR..WRMQKGQRKNLPSNWHFYYHGTGPHKDAKFREKI........QGVFWVAKQGSKVAPTD...LPTRKR...NQPTIEPQFDFD..LPKNIEIV.TAP.......-SQPNSRSNS.RSQSS.............----GGSKSRANSQSRDNSNqqktpkgstnnsrsnsqersqkskkgkggsNQDELVA..AVRQALMGLGFQPQGNSgktggk........ksapssGKSTPKDSRSKSPARPQs..............tKKQLDKPEWKRIPNKS..EGVIACFGPRDVSH...NFGTKGLVSDGVEFPQFPQIAELIPTQAALVFGSRVEVK...........EFQN.EF.........EIKYHYKMNVPKDNKNLPVFLQQVDAYLDPS.........REDKPKEQRKPKEK........KKEETSPQ-----lnpaapvftpp..............
NCAP_BC279/39-390                    .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKKLSPRWYFYYLGTGPEASLPYGANK........EGIVWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................sGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKS..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKYWPQIAQFAPSASAFFGMSRIGME...........VTPL.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KAFPPTEPKKDKKK........KTDEAQP------lpqrkkqpt................
H9AA69_9BETC/51-417                  ...............sqqpt---GGNVVPYYSWFSGITQFQKGKEFEFAEGQGVPIAPGvPATEAKGYWYRHSRrsFKTADGNQRQLLPRWYFYYLGTGPHAKDQYGTDI........DGVFWVASNQADVNTPA..dILDRDP..sSDEAIPTRFSPGtvLPQGYYIE.GSG.......RSAPNSRSTS.RASSR.............--ASSAGSRRANSGTRTPTS..............................---GVTP..DMADQIASLVLAKLGKD....................-ATKPQQVTKQTAKEVR................QKILNKPRQKRSPNKQ..CTVQQCFGKRGPNQ...NFGGGEMLKLGTSDPQFPILAELAPTAGAFFFGSRLELAkvqnlsgnadePQKD.VY.........ELRYSGAIRFDSTLSGFETIMKVLNENLNAY.........QQQDDGMSPKPQRQrg....qrK------------gendnisvavpksrvqqnk......
A0A0U1WHF5_9ALPC/173-409             ...................n---------------------------------------.--------------..----------------------------------........-----------------...------...------------..--------.---.......RAQSNNRSQS.RGRQNqnqnnqptgdggsNGQRNQPRNRSNSRNRSGNQgr.........................nggSQQDLVA..AVREALAGMGFKPNTSG...................sGRNTPVKVPKGDKPLNKpt...........kapASQVEKPVWKRTPHSQ..ENVEVCFGPRDTYQ...NFGDSQLVRLGVDYPHYPQIGELIPSQAALLFGSEITAH...........ERGD.NI.........QLTYIYKMEVPKDHKSLAAFLPHIGAYADSTe......dvTLPPALPPKQQRLR........RSASTEVL-----adtts....................
R9QTB4_SARS/39-390                   .................qrr--PQGLPNNTASWFTALTQHGK-EELRFPRGQGVPINTNsGKDDQIGYYRRATR.rVRGGDGKMKELSPRWYFYYLGTGPEASLPYGANK........EGIIWVATEGALNTPKD..hIGTRNP..nNNAAIVLQLPQGttLPKGFYAE.GSR......gGSQASSRSSS.RSRGN.............SRNSTPGSSRGNSPARMASG.............................gGETALAL..LLLDRLNQLESKVSGKG....................QQQQGQTVTKKSAAEAS................----KKPRQKRTATKS..YNVTQAFGRRGPEQtqgNFGDQDLIRQGTDYKHWPQIAQFAPSASAFFGMSRIGME...........VTPS.GT.........WLTYHGAIKLDDKDPQFKDNVILLNKHIDAY.........KTFPPTEPKKDKKK........KTDEAQP------lpqrkkqpt................
A3EXB0_BCHK4/31-397                  ...................p-KPRPAPNNTVSWYTGLTQHGK-NPLAFPPGQGVPLNANsTTAQNAGYWRRQDR.kINTGNG-VKQLAPRWFFYYTGTGPEANLPFRSVK........DGIVWVYEEGATDAPSV...FGTRNP..aNDAAIVCQFAPGtlIPKNFHIE.GTGgnsqsssRASSNSRNSS.RSSSR.............-GGRSTSNSRGTSPVSHGVG..............................SAESLAAlpLLLDLQKRLADLESGKS....................--KQPKVVTKKDAAAAK................----NKMRHKRVATKG..FNVTQAFGLRGPGPlqgNFGDMNYNKFGTEDPRWPQMAELAPSASAFMSMSQFKLT...........HQSN.DDkgd...piyFLSYSGAIKLDPKNPNYKKWLELLESNIDAY.........KTFPKKERKPKTTEdgavasssA------------sqmedvdakpqrkpk..........
A0A1X9JRR1_9ALPC/26-370              ...................t-QNRTNGSIPLSWFTAIIDESNGNFTSLMPSSGVPTGVG.TAAQQCGYWYRAPT.aYQVRRGKRVALPPAWYFYFLGTGPHANAAYGTAM........DGVFWVKTKNGQIDAKSskaLGVRGN...GTEPKRANVPN-..LPEGLRVN.LPN.......GSRPQSRAQS.QNRNG.............--SRASSMNRNNSRAPSVDR..............................TKEDLKA..VVSQLLSEMGVSKTNKT....................---QPQSKKKKGATPTGt.............phPNQDGKPVWKRKPNKE..EDVTQCFGPRSDSK...NFGDAAFLQHGVDDDRFKAVSFYAPGTAASLFDSKITVA...........DSHDgKK.........LVTFHTTIEVDPNRPEFELFMSQIDAFKKPA.........-SFQQTQRFWETQAd......qSKITDYFKAT---tpg......................
A0A0U1WHF1_9ALPC/7-179               ...................e-ASGRTGRTPLSFFAPLTVSSDKKFWNVLPKNAVPTGKG.NAKQQVGYWNEQPR..WRMQRGERVEKPSYWHFYFLGTGPHADAKFRERI........PGVVWVSKANADLNPTN...LGTRSK...ARSVITPKFDSE..LPSDIEIV.DKS.......-SAPNSRGNS.RSQSR.............-GPGNGANSRNNSKGRNNTN..............................SRDN---..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------snn......................
H9BR29_9NIDO/1-175                   ...................m-AVPSVPKADCSWFQIIKAQNKKVQPLAFKGDGVPINTTlPKEMCHGYWLRYKR..VKPGGA---PLPPSYSFYYTGTGPRATLKYGELQdsdnqdnvNRVLWVKSPDADTSIKP..kVAKRNP..dKHPLLPLRFKPGdgPVQGFRID.PFQs....rgRSVERGQQDR.RAQSA.............EPQRPKQRERSR--------..............................-------..-----------------....................-----------------................----------------..--------------...---------------------------------------...........----.--.........-------------------------------.........--------------........-------------sa.......................
#=GC SS_cons                         ..............XXXXXX-----SSSS-BSSB-EEEESSSTS----ETT--S---TTS-GGGGEEEEEEEEC-EEEETTSSEEEEEEEEEEEETTSSTTTTS-TT--B........TTEEEEEBTTSBTTS-T..STS-B-T..TTS--B----TTT-EESTTEEET.T-X......SXXXXXXXXXX.XXXXX.............-----XXXXXXXXXXXXXXX..............................-XXSXXX..XXXXXXXXXXXXXXXXX....................-XXXXXXXXXSXHHHHH................XXXXSSXGGGXXXBTT..CXHHHHHXSBSSSTTSCSBXXHHHHHHGGGSTTHHHHHTTSXXHHHHHHHSEEEEE...........EETT.EEXXXXXXXXXEEEEEEEEEEXTTSTTHHHHHHHHHHHBTGGXXX...XXXGGSXTTXXXXXXXX........XXXXXX-------XXXXXXXXXXX..............
#=GC seq_cons                        ...................s...ttssssshSWFsslptpsc.p.hph..GpGVPlsts.stspphGYWhRpsR..h+sscGph+pLsP+WaFYYhGTGPcAshpatsph........-GlhWVAppGApsssps...lGsRss...sptuhshpFssG..lPpsahl-.sst.......tSpssSRusS.RopS+..............tspssupoRusSss+psss...............................ttslh...hhhptltpLt.t.tspp.....................tppsppho+psutpsp....................pK.c.KRossKt...sVspsFGtRussp...NFGst-hl+.GsssspaPtlAchsPosuAhhFsS+lphp............pss.sh..........LpYptsl+lspssPsacphhphlst.lssh.........pshs.ppp+pt+pp........tt...........ss.......................
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