#=GF ID CoV_peptidase
#=GF AC PF08715.13
#=GF DE Coronavirus papain-like peptidase
#=GF PI Viral_protease;
#=GF AU Mistry J;0000-0003-2479-5322
#=GF AU Chuguransky S;0000-0002-0520-0736
#=GF SE pdb_2fe8
#=GF GA 26.00 26.00;
#=GF TC 49.70 26.30;
#=GF NC 23.40 24.50;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Family
#=GF CL CL0125
#=GF RN [1]
#=GF RM 10725411
#=GF RT Virus-encoded proteinases and proteolytic processing in the
#=GF RT Nidovirales.
#=GF RA Ziebuhr J, Snijder EJ, Gorbalenya AE;
#=GF RL J Gen Virol 2000;81:853-879.
#=GF RN [2]
#=GF RM 16581910
#=GF RT Severe acute respiratory syndrome coronavirus papain-like
#=GF RT protease: Structure of a viral deubiquitinating enzyme.
#=GF RA Ratia K, Saikatendu KS, Santarsiero BD, Barretto N, Baker SC,
#=GF RA Stevens RC, Mesecar AD;
#=GF RL Proc Natl Acad Sci U S A. 2006;103:5717-5722.
#=GF RN [3]
#=GF RM 10329692
#=GF RT A human RNA viral cysteine proteinase that depends upon a unique
#=GF RT Zn2+-binding finger connecting the two domains of a papain-like
#=GF RT fold .
#=GF RA Herold J, Siddell SG, Gorbalenya AE;
#=GF RL J Biol Chem. 1999;274:14918-14925.
#=GF DR INTERPRO; IPR013016;
#=GF DR SO; 0100021; polypeptide_conserved_region;
#=GF CC This entry contains coronavirus cysteine endopeptidases that
#=GF CC belong to MEROPS peptidase family C16 and are required for
#=GF CC proteolytic processing of the replicase polyprotein. All
#=GF CC coronaviruses encode between one and two accessory cysteine
#=GF CC proteinases that recognise and process one or two sites in the
#=GF CC amino-terminal half of the replicase polyprotein during assembly
#=GF CC of the viral replication complex. HCoV and TGEV encode two
#=GF CC accessory proteinases, called coronavirus papain-like proteinase
#=GF CC 1 and 2 (PL1-PRO and PL2-PRO). IBV and SARS encodes only one
#=GF CC called PL-PRO [1]. The structure of this protein has shown it
#=GF CC adopts a fold similar that of de-ubiquitinating enzymes [2]. The
#=GF CC peptidase family C16 domain is about 260 amino acids in length.
#=GF CC This domain is predicted to have an alpha-beta structural
#=GF CC organisation known as the papain-like fold. It consists of three
#=GF CC alpha-helices and three strands of antiparallel beta-sheet [3].
#=GF SQ 157
#=GS R1AB_FIPV/1497-1796 AC Q98VG9.2
#=GS R1AB_FIPV/1497-1796 DR PDB; 3ETI H; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3ETI E; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3JZT H; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3JZT G; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3JZT C; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3JZT A; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3ETI A; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3ETI D; 200-201;
#=GS R1AB_FIPV/1497-1796 DR PDB; 3ETI C; 200-201;
#=GS A0A096XNJ3_9ALPC/1111-1352 AC A0A096XNJ3.2
#=GS A0A125R5A4_9ALPC/1019-1313 AC A0A125R5A4.1
#=GS H9BR16_9NIDO/1092-1246 AC H9BR16.1
#=GS E3W5I8_9ALPC/1016-1307 AC E3W5I8.1
#=GS R1A_BC512/1081-1283 AC P0C6F6.1
#=GS A8JNZ0_9ALPC/1585-1887 AC A8JNZ0.1
#=GS A0A0U1UZC3_9ALPC/916-1182 AC A0A0U1UZC3.1
#=GS A0A0U1WHB2_9ALPC/1791-2097 AC A0A0U1WHB2.1
#=GS I7AWB5_9BETC/1607-1918 AC I7AWB5.1
#=GS R1AB_CVPPU/1486-1781 AC P0C6Y5.1
#=GS R1AB_CVPPU/1025-1286 AC P0C6Y5.1
#=GS K4K1U5_9ALPC/1053-1247 AC K4K1U5.1
#=GS H9BQZ9_9NIDO/1114-1296 AC H9BQZ9.1
#=GS R1A_SARS/1541-1859 AC P0C6U8.1
#=GS R1A_SARS/1541-1859 DR PDB; 4OVZ B; 65-316;
#=GS R1A_SARS/1541-1859 DR PDB; 4M0W A; 3-319;
#=GS R1A_SARS/1541-1859 DR PDB; 5Y3Q A; 2-315;
#=GS R1A_SARS/1541-1859 DR PDB; 4OW0 B; 57-316;
#=GS R1A_SARS/1541-1859 DR PDB; 4OW0 A; 4-315;
#=GS R1A_SARS/1541-1859 DR PDB; 3MJ5 A; 4-315;
#=GS R1A_SARS/1541-1859 DR PDB; 3E9S A; 2-315;
#=GS R1A_SARS/1541-1859 DR PDB; 5Y3E A; 2-315;
#=GS R1A_SARS/1541-1859 DR PDB; 4OVZ A; 9-313;
#=GS R1A_SARS/1541-1859 DR PDB; 3MJ5 B; 55-316;
#=GS B1PHI7_9ALPC/1167-1393 AC B1PHI7.1
#=GS A0A0U1WHF6_9ALPC/1032-1241 AC A0A0U1WHF6.1
#=GS A0A125R5A3_9ALPC/1493-1792 AC A0A125R5A3.1
#=GS A0A0U1WHB2_9ALPC/1124-1391 AC A0A0U1WHB2.1
#=GS A0A1L2KGB4_9ALPC/1604-1908 AC A0A1L2KGB4.1
#=GS D9J203_9ALPC/1491-1785 AC D9J203.1
#=GS E3W5I8_9ALPC/1489-1791 AC E3W5I8.1
#=GS R1AB_SARS2/1564-1882 AC P0DTD1.1
#=GS R1AB_SARS2/1564-1882 DR PDB; 6XG3 A; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7JIT A; 2-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7OFS A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7JIW A; 7-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6W9C A; 3-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6W9C C; 4-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7LLZ B; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6XAA A; 5-313;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WX4 D; 1-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WUU A; 1-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WUU D; 1-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6XA9 C; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CJD B; 2-312;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7LOS A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CJD A; 6-312;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7JIR A; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7D47 A; 3-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WRH A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WUU B; 1-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7KRX A; 5-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7OFT A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6XA9 E; 5-313;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CMD D; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7M1Y B; 3-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CJD C; 3-312;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CMD C; 1-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7KOL A; 7-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6XA9 A; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WZU A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6W9C B; 3-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7KOK A; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7D47 B; 4-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7KOJ A; 2-314;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7LOS B; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7JIV A; 4-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CMD B; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CMD A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CJM B; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 6WUU C; 1-316;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7LLZ A; 1-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7CJD D; 1-313;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7JN2 A; 4-315;
#=GS R1AB_SARS2/1564-1882 DR PDB; 7M1Y A; 2-315;
#=GS R1A_BC133/1530-1855 AC P0C6F7.1
#=GS Q6UZF5_SARS/1541-1859 AC Q6UZF5.1
#=GS A0A172B3C8_9ALPC/1447-1742 AC A0A172B3C8.1
#=GS B1PHI7_9ALPC/1848-2154 AC B1PHI7.1
#=GS S5YAF0_9ALPC/1675-1976 AC S5YAF0.1
#=GS A0A0U1WHG4_9ALPC/1595-1897 AC A0A0U1WHG4.1
#=GS A0A0U1UZA8_9ALPC/1791-2097 AC A0A0U1UZA8.1
#=GS R1AB_BC512/1081-1283 AC P0C6W0.1
#=GS C6GHE4_9ALPC/1487-1785 AC C6GHE4.1
#=GS A0A0U1WHG4_9ALPC/1041-1226 AC A0A0U1WHG4.1
#=GS I1VWF4_CVH22/995-1258 AC I1VWF4.1
#=GS A0A140H1G9_CVHK1/1637-1949 AC A0A140H1G9.1
#=GS B2BW31_9GAMC/1139-1440 AC B2BW31.1
#=GS H9TEW9_9ALPC/1036-1286 AC H9TEW9.1
#=GS H9TEW9_9ALPC/1487-1782 AC H9TEW9.1
#=GS A0A172B201_9ALPC/1447-1742 AC A0A172B201.1
#=GS D9J202_9ALPC/1491-1785 AC D9J202.1
#=GS A0A0U1UZC3_9ALPC/1508-1812 AC A0A0U1UZC3.1
#=GS R1A_CVPPU/1486-1781 AC P0C6V2.1
#=GS B7U2M9_9BETC/1562-1874 AC B7U2M9.1
#=GS I7B5F2_9BETC/1607-1918 AC I7B5F2.1
#=GS A0A1X9JQL5_9ALPC/1470-1773 AC A0A1X9JQL5.1
#=GS A0A023PN98_9GAMC/1155-1463 AC A0A023PN98.1
#=GS A0A0U1WHD1_9ALPC/1743-2044 AC A0A0U1WHD1.1
#=GS C6GHR9_9BETC/1606-1917 AC C6GHR9.1
#=GS B1PHK1_9ALPC/1750-2051 AC B1PHK1.1
#=GS A0A240FW17_9ALPC/1224-1515 AC A0A240FW17.1
#=GS H9BR24_9NIDO/1067-1244 AC H9BR24.1
#=GS A0A2Z4EVM4_9NIDO/1381-1700 AC A0A2Z4EVM4.1
#=GS H9BR34_9NIDO/995-1294 AC H9BR34.1
#=GS A0A2H4MZ81_9NIDO/1088-1406 AC A0A2H4MZ81.1
#=GS R1A_BC512/1637-1948 AC P0C6F6.1
#=GS A0A172B201_9ALPC/997-1230 AC A0A172B201.1
#=GS A0A0U1WHD1_9ALPC/1142-1357 AC A0A0U1WHD1.1
#=GS R1A_CVM2/1555-1866 AC P0C6U9.1
#=GS A8JNZ0_9ALPC/1038-1255 AC A8JNZ0.1
#=GS A3EXI1_BCHK9/1419-1736 AC A3EXI1.1
#=GS B1PHK0_9ALPC/1142-1340 AC B1PHK0.1
#=GS R1AB_FIPV/1023-1318 AC Q98VG9.2
#=GS A0A096XNJ3_9ALPC/1568-1869 AC A0A096XNJ3.2
#=GS H9TEX0_9ALPC/1487-1782 AC H9TEX0.1
#=GS B7U2L8_9BETC/1562-1874 AC B7U2L8.1
#=GS B1PHK1_9ALPC/1142-1340 AC B1PHK1.1
#=GS R1AB_SARS/1541-1859 AC P0C6X7.1
#=GS R1AB_SARS/1541-1859 DR PDB; 5TL7 B; 2-316;
#=GS R1AB_SARS/1541-1859 DR PDB; 5TL6 B; 2-316;
#=GS R1AB_SARS/1541-1859 DR PDB; 5E6J A; 4-317;
#=GS R1AB_SARS/1541-1859 DR PDB; 2FE8 A; 2-315;
#=GS R1AB_SARS/1541-1859 DR PDB; 2FE8 C; 2-313;
#=GS R1AB_SARS/1541-1859 DR PDB; 5TL7 D; 4-316;
#=GS R1AB_SARS/1541-1859 DR PDB; 2FE8 B; 2-314;
#=GS R1AB_SARS/1541-1859 DR PDB; 5TL6 D; 5-316;
#=GS R1AB_SARS/1541-1859 DR PDB; 5E6J D; 4-316;
#=GS R1AB_SARS/1541-1859 DR PDB; 4MM3 B; 2-316;
#=GS A0A172B3C8_9ALPC/997-1230 AC A0A172B3C8.1
#=GS A0A060A4E9_9NIDO/1103-1286 AC A0A060A4E9.1
#=GS C0KYT7_9BETC/1608-1919 AC C0KYT7.1
#=GS R1AB_BC279/1547-1865 AC P0C6V9.1
#=GS R1AB_BCHK5/1557-1885 AC P0C6W4.1
#=GS C6GHE5_9ALPC/1052-1302 AC C6GHE5.1
#=GS R1AB_CVM2/1555-1866 AC P0C6X8.1
#=GS A3EXI9_BCHK9/1420-1736 AC A3EXI9.1
#=GS T2B9I2_MERS/1481-1806 AC T2B9I2.1
#=GS A0A1L2KGB4_9ALPC/1049-1270 AC A0A1L2KGB4.1
#=GS H9TEX0_9ALPC/1036-1286 AC H9TEX0.1
#=GS R1A_CVMA5/1608-1919 AC P0C6V0.1
#=GS U5LR11_9BETC/1550-1873 AC U5LR11.1
#=GS R1AB_CVH22/1599-1908 AC P0C6X1.1
#=GS A0A4D6FTD3_9GAMC/1106-1410 AC A0A4D6FTD3.1
#=GS A0A0F6SKM6_9GAMC/1198-1506 AC A0A0F6SKM6.1
#=GS A0A0K1Z0N1_SARS/1541-1859 AC A0A0K1Z0N1.1
#=GS R1A_CVH22/1599-1908 AC P0C6U2.1
#=GS D9J203_9ALPC/1011-1256 AC D9J203.1
#=GS B1PHI6_9ALPC/1168-1393 AC B1PHI6.1
#=GS A0A023YA54_MERS/1581-1907 AC A0A023YA54.1
#=GS U5WLB9_SARS/1541-1859 AC U5WLB9.1
#=GS R1AB_BCHK9/1424-1739 AC P0C6W5.1
#=GS C6GHE4_9ALPC/1052-1302 AC C6GHE4.1
#=GS R1A_BC279/1547-1865 AC P0C6F5.1
#=GS I1VWF3_CVH22/995-1258 AC I1VWF3.1
#=GS A0A125R5A3_9ALPC/1019-1313 AC A0A125R5A3.1
#=GS I1VWF3_CVH22/1606-1916 AC I1VWF3.1
#=GS U5WI49_SARS/1541-1859 AC U5WI49.1
#=GS A0A0U1WHG1_9ALPC/1450-1752 AC A0A0U1WHG1.1
#=GS I1VWF4_CVH22/1606-1916 AC I1VWF4.1
#=GS T2B9U0_MERS/1481-1806 AC T2B9U0.1
#=GS R1AB_BC512/1637-1948 AC P0C6W0.1
#=GS A0A1L2KGB5_9ALPC/1604-1908 AC A0A1L2KGB5.1
#=GS A0A0K2RVJ3_9BETC/1565-1878 AC A0A0K2RVJ3.1
#=GS B1PHK0_9ALPC/1750-2051 AC B1PHK0.1
#=GS A0A4D6FWB1_9GAMC/1106-1410 AC A0A4D6FWB1.1
#=GS A3EXH3_BCHK9/1398-1716 AC A3EXH3.1
#=GS R1A_BCHK4/1523-1848 AC P0C6T4.1
#=GS S5Z1D1_9ALPC/1674-1976 AC S5Z1D1.1
#=GS E3W5I9_9ALPC/1489-1791 AC E3W5I9.1
#=GS C6GHE5_9ALPC/1487-1785 AC C6GHE5.1
#=GS R1A_BCHK9/1424-1739 AC P0C6T6.1
#=GS R1A_BCHK5/1557-1885 AC P0C6T5.1
#=GS A0A088DIE1_9BETC/1680-2003 AC A0A088DIE1.1
#=GS A0A140ESF0_9NIDO/1103-1286 AC A0A140ESF0.1
#=GS A0A0U1UZ20_9ALPC/1750-2051 AC A0A0U1UZ20.1
#=GS R1AB_CVMA5/1608-1919 AC P0C6X9.1
#=GS R1AB_CVMA5/1608-1919 DR PDB; 4YPT A; 1608-1910;
#=GS R1AB_CVMA5/1608-1919 DR PDB; 5WFI A; 1609-1909;
#=GS R1AB_CVMA5/1608-1919 DR PDB; 5WFI B; 1609-1911;
#=GS A0A0U1UZ30_9ALPC/1582-1884 AC A0A0U1UZ30.1
#=GS B2BW32_9GAMC/1139-1441 AC B2BW32.1
#=GS K4K1U5_9ALPC/1636-1939 AC K4K1U5.1
#=GS Q5DIC6_SARS/1541-1859 AC Q5DIC6.1
#=GS A0A0S2ZX33_9GAMC/1176-1484 AC A0A0S2ZX33.1
#=GS R1A_CVH22/994-1247 AC P0C6U2.1
#=GS R1A_SARS2/1564-1882 AC P0DTC1.1
#=GS R1A_SARS2/1564-1882 DR PDB; 7LBR A; 1-315;
#=GS R1A_SARS2/1564-1882 DR PDB; 7LBS A; 1-315;
#=GS R1A_SARS2/1564-1882 DR PDB; 7LLF A; 1-315;
#=GS R1A_SARS2/1564-1882 DR PDB; 7LBR B; 1-315;
#=GS R1A_SARS2/1564-1882 DR PDB; 7LBS B; 1-315;
#=GS R1A_SARS2/1564-1882 DR PDB; 7LLF B; 1-315;
#=GS A0A0U1WHF6_9ALPC/1574-1876 AC A0A0U1WHF6.1
#=GS R1AB_IBVB/1174-1482 AC P0C6Y1.1
#=GS R1AB_IBVB/1174-1482 DR PDB; 3EJF A; 170-171;
#=GS R1AB_IBVB/1174-1482 DR PDB; 4X2Z A; 4-304;
#=GS R1AB_IBVB/1174-1482 DR PDB; 3EKE A; 170-172;
#=GS R1AB_IBVB/1174-1482 DR PDB; 5BZ0 A; 57-304;
#=GS R1AB_CVH22/994-1247 AC P0C6X1.1
#=GS Q5DIC7_SARS/1541-1859 AC Q5DIC7.1
#=GS E3W5I9_9ALPC/1016-1307 AC E3W5I9.1
#=GS B6VDX7_THCOV/1079-1257 AC B6VDX7.1
#=GS A0A0K1YZY7_SARS/1541-1859 AC A0A0K1YZY7.1
#=GS A0A125R5A4_9ALPC/1493-1792 AC A0A125R5A4.1
#=GS R9QTB2_SARS/1533-1851 AC R9QTB2.1
#=GS R1AB_BC133/1530-1855 AC P0C6W1.1
#=GS Q9J3E9_9BETC/1605-1916 AC Q9J3E9.1
#=GS A0A0U1WJY1_SARS/1538-1856 AC A0A0U1WJY1.1
#=GS A8JNZ1_9ALPC/1038-1255 AC A8JNZ1.1
#=GS A8JNZ1_9ALPC/1585-1887 AC A8JNZ1.1
#=GS A0A1X9JQL5_9ALPC/1072-1289 AC A0A1X9JQL5.1
#=GS A0A059VJE6_9ALPC/1629-1934 AC A0A059VJE6.1
#=GS A0A0A7UXS1_9BETC/1615-1924 AC A0A0A7UXS1.1
#=GS D9J202_9ALPC/1012-1256 AC D9J202.1
#=GS R1A_IBVB/1174-1482 AC P0C6V3.1
#=GS R1A_CVPPU/1025-1286 AC P0C6V2.1
#=GS R1A_CVPPU/1025-1286 DR PDB; 3MP2 A; 10-220;
#=GS A0A0U1UZ20_9ALPC/1141-1360 AC A0A0U1UZ20.1
#=GS U5KNA9_9BETC/1550-1873 AC U5KNA9.1
#=GS A0A0K2RW65_9BETC/1565-1878 AC A0A0K2RW65.1
#=GS R1AB_BCHK4/1523-1848 AC P0C6W3.1
#=GS A0A0U1UZA8_9ALPC/1125-1392 AC A0A0U1UZA8.1
#=GS C6GHR8_9BETC/1606-1917 AC C6GHR8.1
#=GS A0A0U1WHG1_9ALPC/909-1107 AC A0A0U1WHG1.1
#=GS S5Z1D1_9ALPC/1084-1219 AC S5Z1D1.1
#=GS Q6UZF1_SARS/1541-1859 AC Q6UZF1.1
#=GS B1PHI6_9ALPC/1848-2154 AC B1PHI6.1
#=GS A0A0F6WGL5_9GAMC/1198-1506 AC A0A0F6WGL5.1
#=GS R9QTH2_SARS/1542-1860 AC R9QTH2.1
#=GS A0A1B3Q5W8_9BETC/1466-1787 AC A0A1B3Q5W8.1
#=GS A0A059VJE6_9ALPC/1018-1285 AC A0A059VJE6.1
#=GS A0A1L2KGB5_9ALPC/1049-1270 AC A0A1L2KGB5.1
R1AB_FIPV/1497-1796 ..........................................................ng---TIPIKVTEDTVNQKRVSV.ALDKTYGEQLkG.TVVIKDKDVTNQLPSVSDVGEKVVK.A.LDVDWNAY.YGFPNAA..AFS....A....S.SHDA.Y.E--..--..--....--..-...FDV...VT..H..N..NFIVHKQTDNNCWVNAICLALQRL.K.PTWKFPGVKSLWDAFLTRKTAGFVHMLYH..ISGL.TKGQPGDAELTLHKLVDLMSSDSAVTVTHTTACDKCA-K.VETFTGP---VV.--AAPL--LVCGTDEICVHG....VHVNVKVTSIRGTVAITS....L--I...G.....P...V..V.GD...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAD....KA.Y..HFE..KNLLQVTTAIAS--.-----------nfvantpkkei............................................................................................................
#=GR R1AB_FIPV/1497-1796 SS ..........................................................H----XXXXXXXXXXXXXXXXXX.XXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXX.X.XXXXXXXX.XXXXXXX..XXX....X....X.XXXX.X.X--..--..--....--..-...XXX...XX..X..X..XXXXXXXXXXXXXXXXXXXXXXXX.X.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-X.XXXXXXX---XX.--XXXX--XXXXXXXXXXXX....XXXXXXXXXXXXXXXXXX....X--X...X.....X...X..X.XX...XX..X.XXX.XXX.....X..XX.X.X...X.XXX.XX..XXXXXX..X..X..X.X...XXX....XX.X..XXX..XXXXXXXXXXXX--.-----------XXXXXXXXXXX............................................................................................................
#=GR R1AB_FIPV/1497-1796 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_FIPV/1497-1796 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A096XNJ3_9ALPC/1111-1352 .....................................nirirdlvlvcaskklsfvlady---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.DADD.F.NAH..VA..KV....HT..K...FPVtaiDD..R..G..GYKHLRLRDNNCWANAVFVGLQLC.D.YYTKD---DMVWQCALRGANSRFLEKLYN..ANKT.FYGSTADAAQALERLL---DGDACMTVKL-ALSCFCGDS.TVELRS--SVLK.FRPING-FFDYGY--CNVCE....TTIQALILHVEGKGFFCY....T-AT...K.....D...S..K.ML...FP..G.CVG.EIV.....Y..TG.P.D...Q.GGH.YY...-IKYG..-..-..-.-...---....--.-..---..--------------.-----------ggyhdgtgsrrsadarsqvavynvdg.............................................................................................
#=GR A0A096XNJ3_9ALPC/1111-1352 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A125R5A4_9ALPC/1019-1313 .tadaedvsetvsvvavedsveqvslveensvltpavnpdeqlssveenaevsakndpwa---------------------.----------.-.-------------------------.-.--------.-------..--A....A....V.DEQE.A.EQP..KP..SL....-T..P...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----HDLWDGFKKDDVMPFVEFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGVK.EIVL---ERTVF.KLTPLRNEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...V..S.QF...IV..P.PTM.HAV.....Y..TG.T.T...Q.NGH.YM..iDDCVQ..D..Y..C.V...DG-....--.-..---..--------------.-----------mgikprkhkfytstlflnanvmtadsktmvelhvp....................................................................................
#=GR A0A125R5A4_9ALPC/1019-1313 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9BR16_9NIDO/1092-1246 ...........................nlfdgtdyvseavagvtylavsdkvatsakeld---------------------.----------.-.-------------------------.-.--------.-------..---....-....L.TMSQ.Y.YKY..LD..YC....SL..Q...WKV...KK..-..T..NFTHLVVVRNNCFITAVLDFLQNT.H.VTFRQ-PLDGLYKQYLNGNVEQLVAWCYA..ITNQ.TPGDTGDAVAVLSALLKYNT-------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------dtiiatteccgskvdldgmiftt................................................................................................
#=GR H9BR16_9NIDO/1092-1246 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
E3W5I8_9ALPC/1016-1307 ...........................................nltadvedvslvkeetv---------------------.----------.-.AVADVDNSVEQVTPVEDNSSEQLVS.V.EEKV--DV.SAKN-DP..WAA....A....V.DEQE.A.EQP..KP..SV....-T..P...FRT...TN..L..N..GKIIIKQQDNNCWINACCYQLQAF.D.F-FN----HDLWNGFKKDDIMPFVDFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGVK.EIVLKR--TVFK.LTPLK-NEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...E..S.QF...IV..T.PTM.HAV.....Y..TG.T.T...Q.NGH.YM..iEDCIH..D..Y..C.V...DGMgikpRK.H..KFY..TSTLFLNANVMTAE.F-KTTIEP---tv.....................................................................................................................
#=GR E3W5I8_9ALPC/1016-1307 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_BC512/1081-1283 ....................................................dvfafsya---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...-S..Y..G..GLKVLNQSSNNCWVSSALVQLQLT.G.L-LDS----DEMQLFNAGRVSPMVKRCYE..SQRA.IFGSLGDVSACLESLLKDRDGMSITCTID----CGCG--.-PGVRVYENAIF.RFTPLKTAFPMGR--CLICS....KTLMHTITQMKGTGIFCR....DATA...L.....D...V..D.TL...VV..K.PLC.AAV.....Y..VG.A.Q...D.GGH.YLt.nMYDAN..M..A..V.D..gHGR....HP.I..KFN..--------------.-----------tintlcyk...............................................................................................................
#=GR R1A_BC512/1081-1283 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BC512/1081-1283 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A8JNZ0_9ALPC/1585-1887 ..........................................................kp--KDVKVKVTADGRNVNDVVV.TTAETFDAQL.G.PSANGVESLVGVVPTPMDSGRVVNT.A.PDVNWSKH.FGFSDAA..AFA....V....L.DHSK.F.A-F..DS..EV....--..-...---...--..V..D..GKRALADSDNNCWVNATCLALQFL.K.PTFKYVGWEDLWNKLRSGDVAGFVHLLYY..IEGV.DKGAKGDVESTLSKLDKYIVSSGSVTVERSTLCDRC---.NSTVKTVTGAIA.EASVILNGHADGH---CPHN....FEWRVQVVGVKGDIILLH....SGSL...-.....-...L..N.GP...YV..Y.GDA.YVA.....F..SG.N.I...D.NGH.YT..vFDNKL..S..K..M.Y...DGI....KC.V..KTT..LDTLVASSVVIRNG.SYAV-------ktehvp.................................................................................................................
#=GR A8JNZ0_9ALPC/1585-1887 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1UZC3_9ALPC/916-1182 ......ttcnavdtgvavhkalsrtvvvqtasdpqkeveealaymkpevvkpvveksmfd---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.--Y..PS..TV....--..-...---...--..F..N..GIRVLKQVANNCWLTCATYQLQLA.D.C-YEA----DDYSLFKVGSVKHFVKRCYE..SVGA.VKGSLGDTTQLLERLCKDVK---TLKVTC-NVACDCG--.-TSVKVLEGCVF.HFMPVADAFPYGV--CSNCK....QVAMHTIMGINGTGFFCQ....E---...P.....A...HfdV.KK...AL..C.SIA.ATA....tY..VG.K.Q...N.GGH.YR..tNDFVH..G..K..A.V...DGS....GI.T..PLN..-YKAPVTNCLVVNA.NYVAPTPPV--kv.....................................................................................................................
#=GR A0A0U1UZC3_9ALPC/916-1182 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHB2_9ALPC/1791-2097 .........................................................dtk----TTIKVSLDGRNVVDVDV.AADQTIGEQL.N.ACTTDNVIISDSVVTD-VIDTIVNV.A.PEVDWDSF.YGFPHAA..EFH....M....L.DHSA.Y.A-F..DS..DV....--..-...---...--..V..D..GKRALVGTDNNCWVNAVCLQLQFA.E.VDFTSEGLKDMWNEFLVGNVAKFCHWIYW..LVRA.NKGDAGDAENALNMLNKYVKAHGTVTLTR-ETAEGCCVN.EH---RINSFVV.NASVLRSGCNDGY---CKHG....NAYIARVSKVDGVSVIVN....V-DR...P.....Sv.mS..D.NL...LL..S.GTS.YTA.....F..SG.P.M...D.SGH.YR..vFNPAT..S..K..M.F...DGA....NC.V..GGD..LCNLAVTAVVIKNK.V----------fkiqtadnntpvk..........................................................................................................
#=GR A0A0U1WHB2_9ALPC/1791-2097 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
I7AWB5_9BETC/1607-1918 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSAADL.AAVKDA-..--F....G....F.DEPQ.L.LQY..YS..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFIRVVLREADLSGATCDLE--FICKCGVK.QEQRKGVDAVMH.FGTLDKSGLVKGYNIACTCG....DKLV-HCTQFNVPFLICS....N--T...P.....E...G..K.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR I7AWB5_9BETC/1607-1918 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_CVPPU/1486-1781 .........................................................scs----IPVNVTEDNVNHERVSV.SFDKTYGEQLkG.TVVIKDKDVTNQLPSAFDVGQKVIK.A.IDIDWQAH.YGFRDAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..S..NFIVHKQTDNNCWINAICLALQRL.K.PQWKFPGVRGLWNEFLERKTQGFVHMLYH..ISGV.KKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKV.EKFVGPVVAA--.--PLAIH----GTDETCVHG....VSVNVKVTQIKGTVAITS....L-IG...P.....I...I..-.GE...VL..E.ATG.YIC.....Y..SG.S.N...R.NGH.YT...YYDNR..N..G..L.V..vDAE....KA.Y..HFN..RDLLQVTTAI----.-----------asnfvvkkp..............................................................................................................
#=GR R1AB_CVPPU/1486-1781 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVPPU/1486-1781 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1AB_CVPPU/1025-1286 .........................................sqeevetvevaditsteed---------------------.----------.-.-------------------------.-.--VDIVEV.SAKD-DP..WAA....A....V.DVQE.A.EQF..NP..SL....-P..P...FKT...TN..L..N..GKIILKQGDNNCWINACCYQLQAF.D.F-FN----NEAWEKFKKGDVMDFVNLCYA..ATTL.ARGHSGDAEYLLELMLN--DYSTAKIVLA--AKCGCGEK.EIVLE--RAVFK.LTPLK-ESFNYGV--CGDCM....QVNTCRFLSVEGSGVFVHd.ilSKQT...P.....E...A..M.F-...VV..K.PVM.HAV.....Y..TG.T.T...Q.NGH.YM...VD---..-..-..-.-...---....--.-..---..--------------.-----------diehgycvdgmgikplkkrcytstlfinanvmtraekp.................................................................................
#=GR R1AB_CVPPU/1025-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVPPU/1025-1286 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
K4K1U5_9ALPC/1053-1247 .....................................................kvnpfnf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-EF...YD..Y..K..GIRVLKQKDNNCWVSSTLVQLQLL.D.CY--S---DHAFDLFKAGSVAPIVQKCYE..LTRN.IVGSAGDVSFALEQLLKDLH----TMFITFDVVCGCNNG.ERRQSELSGCVFrFLPTSE-PFV--YGGCPSCD....KPLMHTITSMQGTGVFCQ....D---...P.....K...A..V.DVttlLV..Q.PMC.ASA.....F..IG.N.WfnnS.LGH.Y-...-----..-..-..-.-...---....--.-..---..--------------.-----------ktnvydkgfcvdgn.........................................................................................................
#=GR K4K1U5_9ALPC/1053-1247 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9BQZ9_9NIDO/1114-1296 ..nrtvvrtttdydqvttkaltpqgvleanlfdgedfvqepkpgqiylevtdevqnqake---------------------.----------.-.-------------------------.-.--------.-------..--L....D....L.NLQQ.Y.CVY..LK..TC....HH..K...WSV...SR..T..N..GVMHLXQKDNNCFVSAGINLFQNT.A.YQLRP-AIDALYREYLNGNPNRFVAWIYA..STNR.QVGEMGCPQQVISLLVSNSDA------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------afsattaccntyfnhtgvisva.................................................................................................
#=GR H9BQZ9_9NIDO/1114-1296 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR R1A_SARS/1541-1859 SS ............................................................SXXEEEEEEESSSSSXEEEEE.ETTSXHHHHH.S.SEEETTEEGTTSXXXGGGTTXEEEE.-.--SHHHHH.HHHH---..HHS....-....-.-TTH.H.HHH..HH..HHH..HHT..T...S--...-E..E..T..TEE---S-TTTHHHHHHHHHHTTS.-.--BSSHHHHHHHHHHHTT--HHHHHHHHH..HTT-.-TTS-B-HHHHHHHHHTTBS-TT-EEEEE-EEETTTEEE.EEEEETHHHHEE.ES-S-HHHHHH-EEEEETTS....SEEEEEEEEEESSEEEEE....E---...E.....E...E..E.EE...EE..T.TS-.SEEE...EE..EE.C.S...S.SEE.EE...EEEES..S..S..E.EE.EETT....EE.E..EES..EEEEEEEEEEEE-S.EEE----XXXX.......................................................................................................................
#=GR R1A_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_SARS/1541-1859 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
B1PHI7_9ALPC/1167-1393 .......................eeevkpeevidvssdlddvnkalsfmmpqetkfvdpf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..K...FDY...FD..H..E..GIRVLRQNNNNCWVATTLVQLQLS.G.LLDD----DDSMALFKAGSVSPLVRKCYN..ATGA.IMGSLGDSSQCLEVLLKDL----HSMFITCDSTCGCGSG.TYELSG--SVFR.FMP-TRDSFDYGA--CTVCG....KVLKLKIKTLVGTGIFCQ....D-PK...P....fN...T..A.RA...IV..K.PIC.ASI.....Y..QG.S.T...T.SGH.YK...TNVYG..K..-..-.-...---....--.-..---..--------------.-----------rfcvdgsgvssi...........................................................................................................
#=GR B1PHI7_9ALPC/1167-1393 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHF6_9ALPC/1032-1241 .......................................................gfdsh---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...-D..L..N..GIRVLVQSQNNCWVNATCYQLQML.G.YD------DTAMELFRHGGVHNLVKRCYE..VTGA.FLGSLGDVSFCLEELLRDVKM--AKVTV--EVTCNCSSY.MDELHGTFFRF-.M--PSK--QKFEYGGCGECH....GTRYYRVCGIVGSAIFAQ....PLKH...L.....N...L..D.DL...VC..D.VAS.ASV.....F..LG.N.-...D.CGH.YM..iNDYVH..K..I..C.V...DGM....GV.Y..KI-..--------------.-----------khntidtivaknanikpniiapf................................................................................................
#=GR A0A0U1WHF6_9ALPC/1032-1241 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A125R5A3_9ALPC/1493-1792 ..........................................................ng---TIPVKVTEDTVNHKRVSV.ALDKTYGEQLkG.TVVIKDKDVTNQLPSVSDAGEKVVK.A.LDVDWNAH.YGFINAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..N..NFIVHKQTDNNCWVNAICLALQRL.K.PTWKFPGVKSLWNDFLVRKTAGFVHMLYH..ISGL.RRGQPGDAELTLHKLGELMLSDGTVTITHTTACDKCA-K.TEIFTGP-----.VVAAPLLV--YGTDETCVHG....VSVNVKVTSVRGTVAITS....L--I...G.....P...V..V.GD...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..KNLLQVTTAIASN-.FCTETV-----pknq...................................................................................................................
#=GR A0A125R5A3_9ALPC/1493-1792 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHB2_9ALPC/1124-1391 .................................................lvvdnviaade---------------------.----------.-.--------VVDVETTTQVEEVTVVE.A.VEEDIIKP.EEVIDVS..SDI....E....A.VNQA.L.S-F..MK..PTetkfVDpfK...FDY...YD..H..E..GIRVLRQNNNNCWVASTLVQLQLS.G.--FLD--DDDTMALFKAGSVSPLVRKCYD..AVGA.IVGSLGDASHCLEVLLKDL----HTMFITCDATCGCGSS.NYELSG--SVFR.FMP-TRDSFSYGA--CGVCG....KTLKLKIKTMTGTGFFCQ....DP-K...P....fN...T..A.RA...IV..K.PVC.ASI.....Y..QG.S.T...T.SGH.YK...TNVFG..K..R..F.-...---....--.-..---..--------------.-----------cvdgsgissisnghintill...................................................................................................
#=GR A0A0U1WHB2_9ALPC/1124-1391 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1L2KGB4_9ALPC/1604-1908 .......................................................ksdnv-----VLKVTEDGVNVKDVIV.DSSKSLDKQL.G.VVSDGVESLEGVLPT--KTDTVLSV.A.PAVDWVNF.YGFDNAA..LFA....S....L.DTKP.Y.N-Y..PN..DF....--..-...---...--..V..N..GFRVLKTTDNNCWINATCITLQYL.K.PNFKSEGLNALWNKFVTGDVGPFVSFIYF..ITGS.TKGQKGDSEETLSKLSEYLVSDSVVTLEQYTTCDLCES-.--NITTVKGAVV.CASVLKDGCEVGF---CPHR....HKLRSRVKSVRGRVVITN....V-DR...Pv...vA...Q..P.SR...LL..N.GIA.YTA.....F..SG.P.V...D.SGH.YT..vYDSLT..K..S..I.Y...DGD....RF.V..ASD..LSTLSITAVVVAGG.YMARDVTP---pvq....................................................................................................................
#=GR A0A1L2KGB4_9ALPC/1604-1908 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
D9J203_9ALPC/1491-1785 ......................................................fktpvt-------VVVKDCNKVTKTTV.DASATIGVQL.DsNVVLNEQDCSKCVPDLSMSQATITK.V.ADVDWCSH.YGFENAA..VFS....A....S.DHSD.Y.K-F..ES..AI....--..-...---...--..V..N..DKIVFKQSDNNCWVNSLCLLLQDY.K.PSWRFPGMEDLWSKFVSGNTEAFVHCLYF..ITGA.TKGQPNDVELALHKLEPLLCSSGSVILDEFSGCDYCYNR.S----TVNGPIV.AAPLQTLGDKA----VCRHG....VRVTTRVHKIQGSIILTS....I--N...G.....S...V..T.DC...-L..R.GDG.YVC.....F..TG.S.K...D.KGH.YT...YYS--..G..V..M.Y...DAD....KT.Y..PFK..VTDLSVTTVLISNG.YT---------vpvvqs.................................................................................................................
#=GR D9J203_9ALPC/1491-1785 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
E3W5I8_9ALPC/1489-1791 ..........................................................ng---TIPVKVTEDNVNQKRVSV.ALDKTYGEQLkG.TVVIKDKDVTNQLPSVSDVGEKVVK.A.VDVDWNAY.YGFPNAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..N..NFIAHKQTDNNCWVNATCLALQRL.K.PTWKFPGVKSLWDAFLTRKTAGFVHMLYH..ISGL.KKGQPGDAELTLHKLGELMVSDSVVTVTHTTACDKC-VK.VETFTGP---V-.-VAAPLLV--YGTDETCVHG....VSVNVKVTSVRGTVAITS....L--I...G.....P...V..V.GD...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..KNLLQVTTAIA---.-----------snfvadtlkkkivpt........................................................................................................
#=GR E3W5I8_9ALPC/1489-1791 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_SARS2/1564-1882 ............................................................EVRTIKVFTTVDNINLHTQVV.DMSMTYGQQF.G.PTYLDGADVTKIKPHNSHEGKTFYV.L.PNDDTLRV.EAFE---..YYH....T....T.DPSF.L.GRY..MS..ALn..hTK..K...WKY...PQ..V..N..GLTSIKWADNNCYLATALLTLQQI.E.LKFNPPALQDAYYRARAGEAANFCALILA..YCNK.TVGELGDVRETMSYLFQHANLDSCKRVLN-VVCKTCGQQ.QTTLKGVEAVMY.MGTLSYEQFKKGVQIPCTCG....KQATKYLVQQESPFVMMS....A---...P.....P...A..Q.YE...LK..H.GTF.TCAs...eY..TG.N.Y...Q.CGH.YK...HITSK..E..T..L.Yc.iDGA....LL.T..KSS..EYKGPITDVFYKEN.SYTTTIKPVTY.......................................................................................................................
#=GR R1AB_SARS2/1564-1882 SS ............................................................B--EEEEEEESSSSSEEEEEE.ETTS-HHHHH.S.SEEETTEE-TTS---GGGTTSEEEE.-.S-SHHHHH.HHHH---..HHS....-....-.-TTH.H.HHH..HH..HHH..HHT..T...S--...-E..E..T..TEE---S-TTTHHHHHHHHHHTTS.-.--BSSHHHHHHHHHHHTT--HHHHHHHHH..HTT-.-TTS-B-HHHHHHHHHHTBS-TT-EEEEE-EEETTTEEE.EEEEETHHHHEE.ES-S-HHHHHH-EEEE-TTS....SEEEEEEEEEESSEEEEE....E---...E.....E...E..E.EE...EE..T.TSS.SEEE...EE..ES.S.T...T.SEE.EE...EEEES..S..S..E.EE.EETT....EE.E..EES..EEEEEEEEEEEE-S.EEEESS-XXXX.......................................................................................................................
#=GR R1AB_SARS2/1564-1882 AS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_SARS2/1564-1882 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1A_BC133/1530-1855 ........................................................qqvn----IEVLVTIDGVNFRTVIL.NDATTFRKQL.G.ATFYKGVDISDALPTVKMGGESLFV.A.DNLSESEE.VVLK--E..YYG....T....S.DVTF.L.QRYysLQ..PL....VQ..Q...WKF...VV..H..D..GVKSLKLSNYNCYINATIMMIDMLhD.IKFVVPALQNAYLRYKGGDPYDFLALIMA..YGDC.TFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIR.DIEYTGMRACVY.AGVNSMEELQSVFNETCVCG....SVKHRQLVEHSTPWLLVS....GLNE..vK.....V...S..T.ST...DP..V.YRA.FNV.....F..QGvE.T...S.VGH.YV...HVRVK..D..G..L.FykyDSG....SL.T..KTS..DMKCKMTSVWYPKV.RYTA-------dcnvvvy................................................................................................................
#=GR R1A_BC133/1530-1855 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BC133/1530-1855 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
Q6UZF5_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR Q6UZF5_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A172B3C8_9ALPC/1447-1742 .......................................................tpvtv--------LLEDGPSVQKVVL.EPVVAIDSQL.AsKVVNKNVLCDGVYPDANFDHEVLTK.V.DDVDWSSY.YGFANAD..TFS....A....L.NHDE.F.V-F..ES..TI....--..-...---...--..V..D..GFVVFKQTDNNCWVNATCMLLQNL.K.PTWRFKGMEDLWSKFVSGNTAPFVHLLYF..IIKA.KRGDPNDVEFVLHKLEPLLCESGSVTLDNFKGCDICY-K.PSVVTG---AVV.AAPLQAK----GDNMVCTHG....KSVTTRVTKVQGSVVLTS....T---...C.....G...V..V.SN...SI..K.GDG.YVC.....F..NG.S.A...S.SGH.YT...YSSRN..G..T..V.Y...DAD....KT.Y..TFK..VDDLSVTSVLMLTG.YKL--------pvvhap.................................................................................................................
#=GR A0A172B3C8_9ALPC/1447-1742 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHI7_9ALPC/1848-2154 .........................................................dtk----TTVKVSLDGRNVVDVDV.AADKTIGEQL.N.ACTTDNVIISNSVVT-DVIDTVVNV.A.PEADWDTF.YGFPNAA..EFH....M....L.DHSA.Y.A-F..DS..DV....--..-...---...--..V..D..GKRALVGTDNNCWVNAVCLQLQFA.E.VDFTSEGLKDMWNEFLVGNVAKFCHWLYW..LVRA.TKGDAGDAENALNMLAKYVKAHGTITITR-ETDDGCCAN.EHR---ISSFVV.NASVLRSGCTDGY---CKHG....NAYTACVSKVDGVSVIVN....V-DR...P.....Sv.mS..D.NL...LL..T.GTS.YTA.....F..SG.P.M...D.SGH.YR..vYNPVT..S..K..M.F...DGA....NC.V..GGD..LCNLAVTAVVVKNKvFKMQTS-----nsntpvk................................................................................................................
#=GR B1PHI7_9ALPC/1848-2154 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
S5YAF0_9ALPC/1675-1976 ..........................................................gq----FRVEVTQDQRTYSVKSL.DASKTMGEQL.G.TCSVDNTNVSDQRPTSDIS--KVTV.A.PAVDWDVH.YGFVGAA..SFH....I....L.NHEA.F.E-Y..PS..SV....--..-...---...--..Q..N..GKRVLKTSDNNCWVNAVCLQLQFA.N.AKFVGTGLQTLWDEYLVGNVAGFVHWLYW..LAGV.QKGDPGDAEDTLNLISKFLQSQGHVVVDRTTVDSCCSSQ.RTLVTP----VV.NGSILRMGVDDGA---CKHG....STFINKVVSINGTVILVN....V--G...P.....PissA..P.TS...FI..Q.GLS.YTS.....F..NN.T.V...GgVGH.YT..vYDSTQ..H..G..F.Y...DGD....VF.V..RGE..LAMQPVTALVARHS.HY---------vvkdpvks...............................................................................................................
#=GR S5YAF0_9ALPC/1675-1976 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHG4_9ALPC/1595-1897 ...........................................................d-VQEVRIKVSYNDRDVQDVVV.KGDKVIDQQI.G.PCSTNNFDLTGVKPDDAIN-SVVNV.A.PEVDWISH.YGFPRAD..VWH....T....L.DHSA.Y.D-Y..ES..KE....--..-...---...--..Q..D..GIRVLKFSDNNCWVNATCIQLQIA.K.TTFKNEGIQAMWDEFLVGKVAKFVHWLYW..YQNS.SKGDPGDVEYTLNAISRYMANKSTVVISR-VATTECCND.TKT---IHTPVV.NVSLLRSGVEDGV---CQHG....NKYYSRLVSVKGTVIVTS....T-GK...P.....N...VypR.NA...LI..T.GDS.YTL.....Y..SG.D.V...K.DGH.YT..vFSVKG..D..K..I.F...DGE....NV.S.sNND..LSLYPVTSVVVSN-.-----------kviefekpa..............................................................................................................
#=GR A0A0U1WHG4_9ALPC/1595-1897 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1UZA8_9ALPC/1791-2097 .........................................................dtk----TTIKVSLDGRNVVDVDV.AADQTIGEQL.N.ACTIDNVIISDSVVTD-VIDTIVNV.A.PEVDWDSF.YGFPHAA..EFH....M....L.DHSA.Y.A-F..DS..DV....--..-...---...--..V..D..GKRAIVGTDNNCWVNAVCLQLQFA.E.VDFTSEGLKDMWNEFLVGNVAKFCHWIYW..LVRA.NKGDAGDAENALNMLNKYVKAHGTVTLTR-ETAEGCCVN.EH---RINSFVV.NASVLRSGCNDGY---CKHG....NAYIARVSKVDGVSVIVN....V-DR...P.....Sv.mS..D.NL...LL..S.GTS.YTA.....F..SG.P.M...D.SGH.YR..vFNPAT..S..K..M.F...DGA....NC.V..GGD..LCNLAVTAVVIKNK.V----------fkiqtadnntpvk..........................................................................................................
#=GR A0A0U1UZA8_9ALPC/1791-2097 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BC512/1081-1283 ....................................................dvfafsya---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...-S..Y..G..GLKVLNQSSNNCWVSSALVQLQLT.G.L-LDS----DEMQLFNAGRVSPMVKRCYE..SQRA.IFGSLGDVSACLESLLKDRDGMSITCTID----CGCG--.-PGVRVYENAIF.RFTPLKTAFPMGR--CLICS....KTLMHTITQMKGTGIFCR....DATA...L.....D...V..D.TL...VV..K.PLC.AAV.....Y..VG.A.Q...D.GGH.YLt.nMYDAN..M..A..V.D..gHGR....HP.I..KFN..--------------.-----------tintlcyk...............................................................................................................
#=GR R1AB_BC512/1081-1283 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BC512/1081-1283 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
C6GHE4_9ALPC/1487-1785 ..........................................................ng---TIPVKVTEDTVNQTRVSV.KLDKTYGEQLkG.TVVIKDKDVTNQLPSVSDVGEKVVK.A.LDVDWSAY.YGFPNAA..AFS....A....S.SHDA.Y.E--..--..--....--..-...FDV...VT..H..N..NFIVHKQTDNNCWVNATCLALQRL.K.PTWKFPGVKSLWDDFLTRKTAGFVHMLYH..ITGL.RKGQPGDAELTLHKLGELMSSDSVVTVTHTTACDKCA-K.VETFTG---PVV.AAPLM----IYGTDETCVHG....VSVNFKVTSVRGTVAVTS....L--I...G.....P...V..V.GE...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..RNLLQVTTAI----.-----------asnfiankpkek...........................................................................................................
#=GR C6GHE4_9ALPC/1487-1785 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHG4_9ALPC/1041-1226 ........................................aalsymtptapkptenpfaf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-EF...YD..L..N..GVKVLRQCDNNCWVASALVQLQLL.D.IYN-----DYAYDFFKIGRVAPMVKRCYE..CTGN.IRGSAGDTSHCLEKILSGLH---TMQL-RFSVKCKCGTY.AEEMSG------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------cvfrfmptakafpyggcascgktrmytittmkgtgvfcqeptplnisellveplcasvfksghykt.....................................................
#=GR A0A0U1WHG4_9ALPC/1041-1226 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
I1VWF4_CVH22/995-1258 ...........dkeeevqqeqqedtvvpevevvvdqveevnssfaieavdvkhevspfem---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-PF...EE..L..N..GLKILKQMDNNCWVNSVMLQLQLT.G.ILDD----DYAMQFFKMGRVSKMVERCYN..AEQC.IRGAMGDVGLCLYRLLKDLHTGFM--VMDYK----CSCT.SGRLEESGSVLF.CTPTKKA-F--PYGTCLNCN....APRMCTIRQLQGTIIFVQ....QNPE...P.....V...N..PcAF...VV..K.PVC.ASV.....F..RG.A.V...S.SGH.YQ...I----..-..-..-.-...---....--.-..---..--------------.-----------niypqklcvdgfgvnkiqpwpndalnticirdanysakvekpv............................................................................
#=GR I1VWF4_CVH22/995-1258 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A140H1G9_CVHK1/1637-1949 ...........................................................l-AKKIDVLLTVDGVNFKSISL.TVGEVFGKIL.G.NVFCDGIDVTKLKCSDFYADKILYQ.Y.ENLSLADI.SAVQ---..SSF....G....F.DQQQ.L.LAY..YN..FL...tVC..K...WSV...VV..N..G..PFFSFEQSHNNCYVNVACLMLQHI.N.LKFNKWQWQEAWYEFRAGRPHRLVALVLA..KGHF.KFDEPSDATDFIRVVLKQADLSGAIC--ELELICDCGIK.QESRVGVDAVMH.FGTLAKTDLFNGYKIGCNCA....GRI-VHCTKLNVPFLICS....N--T...P.....L...S..K.DL...PD..D.VVA.ANM.....F..MG.-.V...G.VGH.YT...HLKCG..S..P..Y.Qh.yDAC....SV.K..KYT..GVSGCLTDCLYLKN.L----------tqtftsmlt..............................................................................................................
#=GR A0A140H1G9_CVHK1/1637-1949 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B2BW31_9GAMC/1139-1440 ......................................................vsevvy-------YSTFDGVNYKTHKFsNLGKLVKDVI.GdKVYVDGVCVDNKPLFEIQPGSTFLR.LyPISD-ADK.QH---IK..NYY....E....L.SSKQ.Y.GVF..AA..VY....AR..E...HPI...IE..S..G..GLRYLKQKNNNCFVSTALVMLQHL.K.LEFKG-IVKELWSNFLAGDARGIVAYTYAllYPTV.KYGDMGDAEEVVLKYLNKAKLCA---QLTLNIKCKCGER.NHTFSGVDAVYC.IADVSTRHKALTSRIVCACD....-NVKSSIVYADLPFVFVH....R--N...V.....T...T..K.IK...LE..E.D-F.VCAn...iF.kHG.S.H...Y.CGT.--...-----..-..-..-.-...---....--.-..---..--------------.-----------namysydsmsskagkpilessfsaivfegffk.......................................................................................
#=GR B2BW31_9GAMC/1139-1440 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9TEW9_9ALPC/1036-1286 ......................vtsteedveivevsakddpwaaavdvqeaeqikpslpp---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----NEAWEKFKKGDVMDFVNLCYA..ATTL.ERGHSGDAEYLLELMLN--DYSTAKIVLA--ARCGCGEK.EIVL---ERTVF.KLSPLRNDFKYGV--CGDCM....QINNAGVVECLKDLVYLS....MIEWknaR.....P...V..S.DF...IV..K.PIM.HAV.....Y..IG.S.T...Q.SGH.YM...ID---..-..-..-.-...---....--.-..---..--------------.-----------dcehgycvdgmgikpckgklytstlfinanvmtrvekp.................................................................................
#=GR H9TEW9_9ALPC/1036-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9TEW9_9ALPC/1487-1782 ..........................................................gs----IPVKVTEDNVNHERVSV.SFDKTYGEQLkG.TVVIKDKDVTNQLPSAFDVGQKVVK.A.IDLDWQAH.YGFHDAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..S..NFIVHKQTDNNCWINAICLALQRL.K.PQWKFPGVRGLWNEFLERKTQGFVHMLYH..ISGV.KKGEPGDAELTLHKLGDLMDNDCEIIVTHTTACDKCA-K.VEKFTG---PVV.AAPLAIH----GTDETCVHG....VSVNVKVTQIKGTVAITS....L-SG...P.....I...I..G.E-...VL..E.ATG.YIC.....Y..RG.S.S...K.NGH.YT..yYDNRN..G..L..M.I...DAE....KA.Y..HFN..KDLLQVTTAI----.-----------asnfvvkkpq.............................................................................................................
#=GR H9TEW9_9ALPC/1487-1782 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A172B201_9ALPC/1447-1742 .......................................................tpvtv--------LLEDGPSVQKVVL.EPVVAIDSQL.AsKVVNKNVLCDGVYPDANFDHEVLTK.V.DDVDWSSY.YGFANAD..TFS....A....L.NHDE.F.V-F..ES..TI....--..-...---...--..V..D..GFVVFKQTDNNCWVNATCMLLQNL.K.PTWRFKGMEDLWSKFVSGNTAPFVHLLYF..IIKA.KRGDPNDVEFVLHKLEPLLCESGSVTLDNFKGCDICY-K.PSVVTG---AVV.AAPLQAK----GDNMVCTHG....KSVTTRVTKVQGSVVLTS....T---...C.....G...V..V.SN...SI..K.GDG.YVC.....F..NG.S.A...S.SGH.YT...YSSRN..G..T..V.Y...DAD....KT.Y..TFK..VDDLSVTSVLMLTG.YKL--------pvvhap.................................................................................................................
#=GR A0A172B201_9ALPC/1447-1742 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
D9J202_9ALPC/1491-1785 ......................................................fktpvt-------VVVKDCNKVTKTTV.DASATIGVQL.DsNVVLNEQDCSKCVPDLSMSQATITK.V.ADVDWCSH.YGFENAA..VFS....A....S.DHSD.Y.K-F..ES..AI....--..-...---...--..V..N..DKIVFKQSDNNCWVNSLCLLLQDY.K.PSWRFPGMEDLWSKFVSGNTEAFVHCLYF..ITGA.TKGQPNDVELALHKLEPLLCSSGSVILDEFSGCDYCYNR.S----TVNGPIV.AAPLQTLGDKA----VCRHG....VRVTTRVHKIQGSIILTS....I--N...G.....S...V..T.DC...-L..R.GDG.YVC.....F..TG.S.K...D.KGH.YT...YYS--..G..V..M.Y...DAD....KT.Y..PFK..VTDLSVTTVLISNG.YT---------vpvvqs.................................................................................................................
#=GR D9J202_9ALPC/1491-1785 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1UZC3_9ALPC/1508-1812 .........................................................sla---QYKVQTTEDGVNVNTVIV.SNAKTYGEQL.G.SVTVADSDISATKPAVLDETKMLVV.A.PAVDWVSH.YGFSDAA..AFA....T....F.DHTP.F.A-F..DS..DM....--..-...---...--..V..M..GKRALAQTDNNCWINAACLALQQL.K.PKFKFPGLEAAWNKYVTGDCGEFVHFLYH..ITRS.RKGDLGDTENLLNLLDKYIVASGTVVLERHVDCPTCNS-.--TERTINASVV.SASLSRDGSDDGV--CCAHG....VDYVLRVKHVKGDVIITT....CEQP...K.....C...Y..KsSE...IL..M.GEA.YVA.....F..TG.P.I...S.GGH.YL..vYDRAT..G..Q..V.F...DGN....KC.L..PYD..FDTLTISAVVVKGG.YV---------csmpkk.................................................................................................................
#=GR A0A0U1UZC3_9ALPC/1508-1812 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_CVPPU/1486-1781 .........................................................scs----IPVNVTEDNVNHERVSV.SFDKTYGEQLkG.TVVIKDKDVTNQLPSAFDVGQKVIK.A.IDIDWQAH.YGFRDAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..S..NFIVHKQTDNNCWINAICLALQRL.K.PQWKFPGVRGLWNEFLERKTQGFVHMLYH..ISGV.KKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKV.EKFVGPVVAA--.--PLAIH----GTDETCVHG....VSVNVKVTQIKGTVAITS....L-IG...P.....I...I..-.GE...VL..E.ATG.YIC.....Y..SG.S.N...R.NGH.YT...YYDNR..N..G..L.V..vDAE....KA.Y..HFN..RDLLQVTTAI----.-----------asnfvvkkp..............................................................................................................
#=GR R1A_CVPPU/1486-1781 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVPPU/1486-1781 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
B7U2M9_9BETC/1562-1874 .........................................................ldk----VDILLTVDGVNFTNRFV.PVGESFGKSL.G.NVFCDGVNVTKHKCDINYKGKVFFQ.F.---DNLSS.EDLKAVR..SSF....N....F.DQKE.L.LAY..YN..MLv..nCF..K...WQV...VF..N..G..KYFTFKQANNNCFVNVSCLMLQSL.N.LKFKIVQWQEAWLEFRSGRPARFVSLVLA..KGGF.KFGDPADSRDFLRVVF--SQVDLTGAICDFEIACKCGVK.QEQRTGVDAVMH.FGTLSREDLEIGYTVDCSCG....KKLIHCV-RFDVPFLICS....N---...T.....P...A..S.VK...LP..K.GVG.SAN....iF..KG.D.-...K.VGH.YV...HVKCE..Q..SyqL.Y...DAS....NV.K..KVT..DVTGNFSDCLYLKN.L----------kqtfksvlt..............................................................................................................
#=GR B7U2M9_9BETC/1562-1874 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
I7B5F2_9BETC/1607-1918 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSAADL.AAVKDA-..--F....G....F.DEPQ.L.LQY..YS..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFIRVVLREADLSGATCDLE--FICKCGVK.QEQRKGVDAVMH.FGTLDKSGLVKGYNIACTCG....DKLV-HCTQFNVPFLICS....N--T...P.....E...G..K.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR I7B5F2_9BETC/1607-1918 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1X9JQL5_9ALPC/1470-1773 .........................................................eel----VTVLVTEDSVNYTSTTV.STNSTFGEQL.G.ICAVASKDVTNAQPTLADEGCAVVL.P.PSIDYASY.YGFD-AA..SFI....A....V.GHGD.Y.N-F..EI..VV....--..-...---...--..D..D..GIVALSQDRNNCWLNVVCLSLQML.K.PHFKFEGLRKLWDEFCTGAVAGFCHFVYF..VSNI.SLGSKADAEVVLHKLNNFIESDTTVTHMTCTQCVDCKDD.TCTVTG---AVV.NSVLSRSAVTAGN---CKHG....YCKNVIVKSVSGDCILTS....N--K...P.....C...S..A.DQ...YV..S.NVG.RIL.....Y..TG.D.E...T.NGH.YT..fYDCTR..G..R..L.Y...DGS....TY.KvqDVA..SVSASVSSLVVKIH.SYAPVTQP---ktv....................................................................................................................
#=GR A0A1X9JQL5_9ALPC/1470-1773 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A023PN98_9GAMC/1155-1463 ............................................................TCKQKTIYLTEDGVKYRSATV.KPGDSLS-QF.G.PVFARNKT---VFTADDVEDKEILF.I.PTTD----.---KTVL..EYY....G....L.DAQK.Y.VIY..LQ..TL....AQ..K...WNV...QY..R..D..NFVILEWRDGNCWINAAVVLLQAA.K.IRFKG-FLAEAWAQLLGGDPTDFVAWCYA..SCNA.NVGEFSDANWLLANLAEYFDADYTNAFLKRRVSCNCGVK.NCEVRGLEACIQpVKAPNLLHFKTQYTNCTVCD....ANSVDEVVEASLPYLLLL....ATDG...P.....T...T..V.DC...DE..N.AVG.NVV.....F..IG.S.T...N.SGHcYT...-QAIG..K..A..F.D...NLA....KD.R..KFS..KNSPYITAMYTRFS.LKSESSLSV--vk.....................................................................................................................
#=GR A0A023PN98_9GAMC/1155-1463 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHD1_9ALPC/1743-2044 .......................................................ttssi------VKVSEDGRTVKDVVV.STTSDAGVQL.G.PCAVDGTSLTASVVTD-VVSSVVAV.A.PNVDWDSH.YGFKDAG..TFH....V....L.DHNA.Y.A-Y..DS..DF....--..-...---...--..V..D..GKRALASSDNNCWVNATCLQLQFA.G.VEFLSKGVTAMWNEFLTGDVARFVHWLYW..LNGA.NKGDLGDVETTLNLVAKYAKPKGCVTIEK-TTTDGCCSS.E---KRVNSLVV.NASVLRQGVGDGY---CQHG....SEYIIRVARVEGTAIVVN....VGDP..sV.....K...A..P.NL...LI..S.GTA.YTA.....F..SG.P.V...D.AGH.YR..vYCAAT..S..K..V.F...DGK....NV.V..GGD..LCNLAVTSVVVVNK.S----------fkadlgva...............................................................................................................
#=GR A0A0U1WHD1_9ALPC/1743-2044 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
C6GHR9_9BETC/1606-1917 .........................................................ank----VDVLCTVDGVNFRSCCV.TEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YN..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.N.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFIRVVLREADLSGATCDLE--FICKCGVK.QDQRKGVDAVMH.FGTLDKSDLVKGYNIACTCG....SKLV-HCTQFNVPFLICS....Y--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.LGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR C6GHR9_9BETC/1606-1917 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHK1_9ALPC/1750-2051 .......................................................ttpsv------VKVTEDGRTVKDVVV.STTTTAGDQL.G.PCAVEGASLTTSVVTDVVN-SVVAV.A.PNVDWDSH.YGFKDAG..NFH....V....L.DHSA.Y.A-Y..DS..DF....--..-...---...--..V..D..GKRALAGSDNNCWVNATCLQLQFA.G.VEFLSKGVTAMWNEFLTGDVARFVHWLYW..LNGA.SKGDLGDVETTLNLVAKHAKPKGCVTIEKTTVDGCCVSE.----KRVNSLVV.NASVLRQGVGDGY---CQHG....NEYIIRVSRVEGTAIIVN....VGDP..sV.....K...A..P.NL...LI..S.GTA.YTA.....F..SG.P.I...D.AGH.YR..vYCSAT..S..K..V.F...DGK....SI.V..GGD..LCNLAVTSVVVVNK.FFK--------aevcna.................................................................................................................
#=GR B1PHK1_9ALPC/1750-2051 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A240FW17_9ALPC/1224-1515 .........nltvdirndvnievpveseqnihvsdiedskeskivnlngrdsyrvdsnye---------------------.----------.-.-------------------------.E.EDADWETF.YGFSNAK..VFS....E....I.DYSR.Y.K--..--..--....--..-...TKF...KI..K..H..GYVALQNVANNCWVNSVGLMLQRA.D.VVFNSEGLNVLWKRYLEGKNGGFIAFLYF..IMNK.EIGDLGDAEQVLLVLNKYIKCESKVIVSTEYECDSCENK.VVTYEGLIAP--.-VSLIERNFQ------CDHG....KKVTTKVLKLSGDMIFVD....VNGF...N.....P...F..E.SN...GF..N.LQS.ANV.....I..VG.G.E...E.LCH.YW..yWDKQ-..-..-..-.-...---....--.-..---..--------------.-----------knivftgkgwsdksvkdkiaysafvkndefkkkn.....................................................................................
#=GR A0A240FW17_9ALPC/1224-1515 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9BR24_9NIDO/1067-1244 ........................................dsnhadvwsnlnksivkvtl---------------------.----D----F.D.QVTTKHMSLDEIKQARLFDGEKFITqA.GDSIYLQVtSATEQAA..SNL....G....L.TLAQ.Y.FRM..LQ..YT....SI..K...WTV...VK..K..N..GIMVLKQSHNNCYVASAIAFMQMV.N.YKPSG-AVADLFNSFLNGNPSEFVAYCYA..ASGQ.VPGQMGDAMSVLDVLFKD---------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------fvvrgttacc.............................................................................................................
#=GR H9BR24_9NIDO/1067-1244 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A2Z4EVM4_9NIDO/1381-1700 ........................................................eepl----IKVYTTVNGLEYNTVYV.DTQRTFGVQI.G.TVYVSGSDYTNRVPTANDDGVQLFK.Q.DNFTPEES.EAIR---..AYY....G....V.FETD.I.VAR..VG..SIq.raVK..D...WQF...AV..V..D..GRVALQQMANNCYLNAALLLLQDI.N.VEFTTPWVKHAYDSLRGGNPLPMVTVLVA..LGKT.TIGNPDDANMVITAVLTHATVNA-KRVTT-TVCDTCGAK.HEEVTGILACTY.YGSVVLDDLYKPESVVCTCG....RSAIRFVSVQQSPWVLMS....H--V...P.....T...T..T.PL...EP..S.GHW.TAAi...vF..RG.S.I...S.NGH.YM...YARRG..M..L..V.Dv.yDAT....TR.K..RTS..DLKVPATDVLYTNV.NFTSASKVV--ty.....................................................................................................................
#=GR A0A2Z4EVM4_9NIDO/1381-1700 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9BR34_9NIDO/995-1294 ............................................tqddrhlqawdainrv-------------------VV.QTTKDFD-QV.T.---TQHLTPQGVLDANLYDGHDFVL.E.PKPNHV-Y.LAVDDVI..QTA....AndldL.TLSQ.Y.CMY..LK..NC....QV..R...WTT...KR..V..K..GLVHLQQQSNNCFVSSALNFYQNT.H.YKFRP-VIDALYQEYLNGNPSRLVAWIYA..SISQ.SIGELGCPQQVLNLLV----LNSNSKFSG---VTHCCKR.YFTHDGVVANVE.----EFDLLQSKV--YCVQC....ECWTTFDAEQTEGVITVG....RTSG...P.....A...P..T.HA...IM..F.GNA.HCW.....Y..T-.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------dgrksvngydiqadvvaiyhkfnkvpeqtamlaqvfetsnkyevlkvdpv.....................................................................
#=GR H9BR34_9NIDO/995-1294 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A2H4MZ81_9NIDO/1088-1406 ...........................................................k-VQKVKVLVSEGDDNYTTTDV.VLTKTFGEQF.G.SCTIAGVDVSNRYPTHQDNMKAVFK.V.PVADWNLY.YGLP---..---....-....-.DGEK.F.EQY..RL..CFknnlVP..K...VIE...ID..G..N..KIVCFQQKDNCCWVNAVVNMLQCV.K.PVFSTNAIADFYAKFLMCDVNDFLAFIYY..TSGT.KYGEPGDAEFTFSKLMNYTQNQTNSTWQT--VCKDCGVH.--DVKSTDVCVY.------RKLATEYTEPCNNGfcdkMVCTSLVLCKGNSYVHTL....AHHD...K.....F...T..T.DT...LF..D.KVY.APVkmavsL..IG.N.P...D.AGH.YK..tVWFAD..G..S..I.Yi.vDAD....KI.I..KLR..SVDVNMNKVKA---.-----------lsgvltsvvlgpvdy........................................................................................................
#=GR A0A2H4MZ81_9NIDO/1088-1406 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_BC512/1637-1948 ............................................................EAKPVQVVVTQDQRSFHTVEL.STSQTYGQQL.G.DCVVEDKKVTNLKPVS--KDKVVSV.V.PNVDWDKH.YGFVDAG..IFH....T....L.DHTM.F.V-F..DN..NV....--..-...---...--..V..N..GKRVLRTSDNNCWINAVCLQLQFA.N.AKFKPKGLQQLWESYCTGDVAMFVHWLYW..ITGV.EKGEPSDAENTLNIISRFLKPQGSVEMLR-ATSTTCDGT.CSTKRVVSTPVV.NASVLKVGLDDGN---CVHG....LPLVDRVVSVNGTVIITN....VGDT...PgkpvvA...T..E.NL...LL..D.GVS.YTV.....F..QD.S.T..tG.VGH.YT..vFDKEA..K..L..M.F...DGD....VL.K..PCD..LNVSPVTSVVVCNN.KKIVVQDPV--kr.....................................................................................................................
#=GR R1A_BC512/1637-1948 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BC512/1637-1948 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A172B201_9ALPC/997-1230 ................................veevsdycpsdddvdedgcvqtvsvfaf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-DN...ST..I..N..GKVVLKQSQNNCWINAAGYQLQCL.N.VL-S----SEEFRQYCVGDVESLVRLMYD..MTNR.KVGDLGEAEYVLELCLGG--LETAKVTLS--AQCDCGIV.EDVIAGCAFRMC.CTDATF-----DYGMCGTCR....VIKKTTIVKVEGTGVFLH....E---...P.....K...T..Y.KP...LV..K.PVC.KAI.....F..KG.D.T...D.GGH.YM..vHDVEA..K..V..L.V...DGF....--.G..LHP..VKNLPFTSVCFVNA.NY---------vrrakat................................................................................................................
#=GR A0A172B201_9ALPC/997-1230 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHD1_9ALPC/1142-1357 .............................................lsfivdeprafvdpf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..K...FEY...YD..H..A..GVRVLKQDANNCWVASTIVQLQLY.-.-GFES----DAMSLFKAGSVSPMVRNCYE..AVSA.IRGSLGDVSQCLERLL----CDSHTMFMTFDVKCKCGVS.MAEMSG--AVFR.-FMPTRDAFNYGA--CPTCR....SVMVYKIKSMQGSGFFCQ....DPKP...F.....N...T..A.RS...LV..K.PVS.ASV.....Y..SG.S.T...D.GGH.YK...-----..-..-..-.-...---....--.-..---..--------------.-----------tniynarvcvdgfgvtsivtgnvnvvflrdv........................................................................................
#=GR A0A0U1WHD1_9ALPC/1142-1357 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_CVM2/1555-1866 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSAADL.VAVTD--..-AF....G....F.DEPQ.L.LKY..YN..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFHKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFMRVVLREADLSGATC--DFEFVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLAKGYTIACTCG....NKLV-HCTQLNVPFLICS....N--K...P.....E...G..K.KL...PD..D.VVA.ANI.....F..TG.G.-...S.LGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssklt.................................................................................................................
#=GR R1A_CVM2/1555-1866 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVM2/1555-1866 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A8JNZ0_9ALPC/1038-1255 ..................................................raispfgfdt---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...NE..I..N..GRRVLYQSNNNCWVNAACYQLQVL.-.-GFDSPA----MELYRVGGTHNLVKQCYE..ATGA.FLGSLGDVAHCLEVLLKDAK--TAK-V-TVEVTCDCSSN.FEELSGA--FFR.FLP---LRSKFEYGSCFACH....GTRYYRVCGIVGSAIFSQ....T-LK...P.....L...D..F.ND...LI..C.DVAsASV.....F..LG.D.-...D.CGH.YL..iNDYDK..R..L..C.V...DGM....GV.Y..KIR..HNTID-TIVVKDAD.IKPSTVAP---fte....................................................................................................................
#=GR A8JNZ0_9ALPC/1038-1255 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A3EXI1_BCHK9/1419-1736 .........................................................etl----IKVLTTVDGINYNTVLV.SREQTYRAQI.G.TVFCDGRDYSDRRPTIADEGVHLFK.-.--QDNFSM.EELQSMR..EYY....G....V.EDPN.IvARA..MS..VRk..iVQ..Q...WPY...AV..I..D..GRVLLAQRDSNCYVNVALSLLQDV.D.VTFTTPWVARAYSALKGGNPLPMAEVLIA..LSKA.TPGECDDAHMVLSTVLNHGTVDARRVMQ--TVCEVCGVS.QFVFTGTDACTF.YGSVMLDDLYEPVSIVCACG....RSAIRYVLEQRSPWLLMS....H--T...P.....T...Q..V.PL...DT..S.GNW.QAAi...vF..RG.P.V...T.AGH.YM...YAVNG..T..L..I.Sv.fDAN....TR.K..RTS..DLKLPATDILYGPT.SFTSAS-----kvet...................................................................................................................
#=GR A3EXI1_BCHK9/1419-1736 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHK0_9ALPC/1142-1340 ..............................................alsfivdepsafvd---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..P...FKF...EY..Y..DhaGVRVLKQEVNNCWVASTLVQLQLY.-.-GFDS----DAMSLFKAGSVSPMVRRCYE..AVGA.IRGSLGDVSQCLEKLL----SDSHTMFMTFDVKCDCGAS.VAEMSG---AVF.RFMPTRDSFNYGA--CPTCR....SVMVYKIKSMQGTGFFCQ....DPKP...F.....N...T..A.RS...LV..R.PVS.ASV.....Y..SG.R.T...D.GGH.YK...-----..-..-..-.-...---....--.-..---..--------------.-----------tniydarvcvdgf..........................................................................................................
#=GR B1PHK0_9ALPC/1142-1340 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_FIPV/1023-1318 ..............................edvssvegetvsvvdvedfveqvslveenn---------------------.----------.-.-----------VLTPAVNPDEQLSS.V.EKKDEVSA.KND---P..WAA....A....V.DEQE.A.EQP..KP..SL....-T..P...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----HDLWDGFKKDDVMPFVDFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGVK.EIVL---ERTVF.KLTPLRNEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...V..S.QF...IV..T.PTM.HAV.....Y..TG.T.T...Q.SGH.YM..iEDCIH..D..Y..C.V...DGMgikpRK.H..KFY..TSTLFLNANVMTAK.SKT--------mveppvpv...............................................................................................................
#=GR R1AB_FIPV/1023-1318 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_FIPV/1023-1318 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A096XNJ3_9ALPC/1568-1869 .........................................................eei----VTVLVTEDTVNYTTTSV.STSATFGEQL.G.VCAIADTDVTTQKPTLENEGCAVVV.P.PAIDYESY.YGFD-AA..SFC....A....V.SHND.Y.N-F..GC..VI....--..-...---...--..D..D..GVVALTQDRNNCWLNAVCLSLQML.K.PQFKFDGIKKLWDEFCTGDVAGFCHFVYF..TSNI.SLGSKADAEVVLRKLSGFIES--DNSVVH-MVCTQCVDC.KEDLVRTDGAVI.VSSLSRGNVVSGK---CEHG....YCRNVIVQRITGDCILTS....S--K...P.....C...V..S.DQ...YI..T.NVG.RIL.....Y..NG.D.E...S.NGH.YT..fYDCFR..G..R..L.Y...DGS....VF.T..LQGvaSVKAPVSSLVVKK-.-----------qavvqkrppi.............................................................................................................
#=GR A0A096XNJ3_9ALPC/1568-1869 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9TEX0_9ALPC/1487-1782 ..........................................................gs----IPVKVTEDNVNHERVSV.SFDKTYGEQLkG.TVVIKDKDVTNQLPSAFDVGQKVVK.A.IDLDWQAH.YGFHDAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..S..NFIVHKQTDNNCWINAICLALQRL.K.PQWKFPGVRGLWNEFLERKTQGFVHMLYH..ISGV.KKGEPGDAELTLHKLGDLMDNDCEIIVTHTTACDKCA-K.VEKFTG---PVV.AAPLAIH----GTDETCVHG....VSVNVKVTQIKGTVAITS....L-SG...P.....I...I..G.E-...VL..E.ATG.YIC.....Y..RG.S.S...K.NGH.YT..yYDNRN..G..L..M.I...DAE....KA.Y..HFN..KDLLQVTTAI----.-----------asnfvvkkpq.............................................................................................................
#=GR H9TEX0_9ALPC/1487-1782 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B7U2L8_9BETC/1562-1874 .........................................................ldk----VDILLTVDGVNFTNRFV.PVGESFGKSL.G.NVFCDGVNVTKHKCDINYKGKVFFQ.F.---DNLSS.EDLKAVR..SSF....N....F.DQKE.L.LAY..YN..MLv..nCF..K...WQV...VF..N..G..KYFTFKQANNNCFVNVSCLMLQSL.N.LKFKIVQWQEAWLEFRSGRPARFVSLVLA..KGGF.KFGDPADSRDFLRVVF--SQVDLTGAICDFEIACKCGVK.QEQRTGVDAVMH.FGTLSREDLEIGYTVDCSCG....KKLIHCV-RFDVPFLICS....N---...T.....P...A..S.VK...LP..K.GVG.SAN....iF..KG.D.-...K.VGH.YV...HVKCE..Q..SyqL.Y...DAS....NV.K..KVT..DVTGNFSDCLYLKN.L----------kqtfksvlt..............................................................................................................
#=GR B7U2L8_9BETC/1562-1874 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHK1_9ALPC/1142-1340 ..............................................alsfivdepsafvd---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..P...FKF...EY..Y..DhaGVRVLKQEVNNCWVASTLVQLQLY.-.-GFDS----DAMSLFKAGSVSPMVRRCYE..AVGA.IRGSLGDVSQCLEKLL----SDSHTMFMTFDVKCDCGAS.VAEMSG---AVF.RFMPTRDSFNYGA--CPTCR....SVMVYKIKSMQGTGFFCQ....DPKP...F.....N...T..A.RS...LV..R.PVS.ASV.....Y..SG.R.T...D.GGH.YK...-----..-..-..-.-...---....--.-..---..--------------.-----------tniydarvcvdgf..........................................................................................................
#=GR B1PHK1_9ALPC/1142-1340 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR R1AB_SARS/1541-1859 SS ............................................................--SEEEEEEESSSSSEEEEEE.ETTS-HHHHH.S.SEEETTEEGTTS---GGGTT-EEEE.-.--SHHHHH.HHHH---..HHS....-....-.-TTH.H.HHH..HH..HHH..HHT..T...S--...-E..E..T..TEE---S-TTTHHHHHHHHHHTTS.-.--BSSHHHHHHHHHHHHT--HHHHHHHHH..HTT-.-TTS-B-HHHHHHHHHTTBS-TT-EEEEE-EEETTTEEE.EEEEETHHHHEE.ES-S-HHHHHH-EEEE-TTS....SEEEEEEEEEESSEEEEE....E---...E.....E...E..E.EE...EE..T.TS-.SEEE...EE..EE.E.S...S.SEE.EE...EEEES..S..S..E.EE.EETT....EE.E..EES..EEEEEEEEEEEE-S.EEE----XXXX.......................................................................................................................
#=GR R1AB_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_SARS/1541-1859 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A172B3C8_9ALPC/997-1230 ................................veevsdycpsdddvdedgcvqtvsvfaf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-DN...ST..I..N..GKVVLKQSQNNCWINAAGYQLQCL.N.VL-S----SEEFRQYCVGDVESLVRLMYD..MTNR.KVGDLGEAEYVLELCLGG--LETAKVTLS--AQCDCGIV.EDVIAGCAFRMC.CTDATF-----DYGMCGTCR....VIKKTTIVKVEGTGVFLH....E---...P.....K...T..Y.KP...LV..K.PVC.KAI.....F..KG.D.T...D.GGH.YM..vHDVEA..K..V..L.V...DGF....--.G..LHP..VKNLPFTSVCFVNA.NY---------vrrakat................................................................................................................
#=GR A0A172B3C8_9ALPC/997-1230 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A060A4E9_9NIDO/1103-1286 lnrtivrtttdydqvttkaltpqgvleanlfdgedfvqepkpgqiylevteevqnqakel---------------------.----------.-.-------------------------.-.--------.-------..---....D....L.NLQQ.Y.CVY..LK..TC....HH..K...WVV...SR..T..N..GLMHLKQKDNNCFVSAGVNLFQNT.A.YQLRP-AIDALYREYLNGNPNRFVAWIYA..STNR.RVGEMGCPQQVISLLVSNSDA------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------afsattaccntyfnhtgvisva.................................................................................................
#=GR A0A060A4E9_9NIDO/1103-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
C0KYT7_9BETC/1608-1919 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIYKGKVFFQ.Y.SDLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YT..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSIDFMRVVLREADLSGATCNLE--FVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLVRGYNIACTCG....SKLV-HCTQFNVPFLICS....N--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.N..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR C0KYT7_9BETC/1608-1919 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BC279/1547-1865 ............................................................EVRTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.PTYLDGADVTKIKPHAKHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..I..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNR.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKTCGQK.STTLTGVEAVMY.MGTLSYEELKTGVTIPCICG....RDATQYLVQQESSFVMMS....A---...P.....P...S..E.YT...LQ..Q.GAF.LCAn...eY..TG.S.Y...Q.CGH.YT...HVTVK..E..T..L.Yr.iDGA....YL.T..KMS..EYKGPVTDVFYKEI.SYTTTIKPVSY.......................................................................................................................
#=GR R1AB_BC279/1547-1865 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BC279/1547-1865 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1AB_BCHK5/1557-1885 ..........................................................qq--KNVDVLVTIDGVNFRTVVL.NNTTTYRVQL.G.SVFYKGSDISDTIPTEKMSGEAVYL.A.DNLS----.EAEKAVLseVYG....T....A.DTAF.L.HRY..YS..LLa..lVK..K...WKY...TV..H..D..GVKSLKLNSNNCYVNVTMLMLDML.KeIKFIVPALQAAYLKHKGGDSTEFIALIMA..YGDC.TYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQ.DTTTTGLKACIY.VGMNSLDELHATHEECCQCG....DVRKRQLVEHNAPWLLLSglneAKVM..tP.....T...S..Q.SA...GP..D.YTA.FNV.....F..QGvE.T...S.VGH.YL...HVRVK..D..N..LlYk.yDSG....SL.S..KTS..DMKCKMTDVYYPKQ.RY---------sadcnvvv...............................................................................................................
#=GR R1AB_BCHK5/1557-1885 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BCHK5/1557-1885 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
C6GHE5_9ALPC/1052-1302 ......................................qlssvdekvevsakndpwaaav---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.DEQE.A.EQP..KP..SL....-A..A...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----HDLWGDFKKDDVMPFVNFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGIK.EIVL---ERTVF.KLTPLKDEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...M..S.QF...IV..E.PIM.HAV.....Y..TG.T.I...Q.NGH.YM..iEDCIH..D..-..-.-...---....--.-..---..--------------.-----------ycvdgmgikprkhkfytstlflnanvmtaesktkvg...................................................................................
#=GR C6GHE5_9ALPC/1052-1302 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_CVM2/1555-1866 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSAADL.VAVTD--..-AF....G....F.DEPQ.L.LKY..YN..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFHKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFMRVVLREADLSGATC--DFEFVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLAKGYTIACTCG....NKLV-HCTQLNVPFLICS....N--K...P.....E...G..K.KL...PD..D.VVA.ANI.....F..TG.G.-...S.LGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssklt.................................................................................................................
#=GR R1AB_CVM2/1555-1866 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVM2/1555-1866 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A3EXI9_BCHK9/1420-1736 ..........................................................al----IKVLTTVDGINYNTVLV.SREQSYKAQI.G.KVFCDGRDYSDRRPANADEGIHLFK.-.--QDNFSA.EELKSMR..EYY....G....VeDPNI.I.ARA..MS..IRk..tVQ..T...WPF...TV..L..D..GRVLLAQRDSNCYLNVAISLLQDV.E.VTFTTPWVARAHAALKGGNPLPMAEVLIA..LSKA.RPGECDDAHMILSTVLNHGVVEARRVM-Q-TVCESCGIS.QLVFRGTDACTF.YGSVLLDDLYEPVSVVCPCG....RPAIRYVSEQKSPWLLMS....H--S...P.....S...Q..V.PL...DT..S.GSW.KSAi...vF..RG.P.V...T.AGH.YM...YAVNG..TliS..V.Y...DAN....TR.K..RTS..DLKLPATDILYGPT.NFTS-------sskvet.................................................................................................................
#=GR A3EXI9_BCHK9/1420-1736 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
T2B9I2_MERS/1481-1806 .........................................................qql---TIEVLVTVDGVNFRTVVL.NNKNTYRSQL.G.CVFFNGADISDTIPDEKQNGHSLYL.A.DNLTADET.KALK--E..LYG....P....V.DPTF.L.HRF..YSlkAA....VH..K...WKM...VV..C..D..KVRSLKLSDNNCYLNAVIMTLDLL.KdIKFVIPALQHAFMKHKGGDSTDFIALIMA..YGNC.TFGSPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIK.DVVLQGLKACCY.VGVQTVEDLRARMTYVCQCG....GERHRQIVEHTTPWLLLS....GTPNe.kL.....V...T..T.ST...AP..D.FVA.FNV.....F..QGiE.T...A.VGH.YV...HARLK..G..G..L.IlkfDSG....TV.S..KTS..DWKCKVTDVLFPGQ.-----------kyssdcnvvr.............................................................................................................
#=GR T2B9I2_MERS/1481-1806 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1L2KGB4_9ALPC/1049-1270 .................................................sapvpehpfaf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...PF..R..DelGVRVLNQAENNCWINTTLIQLQLT.K.LLEES----VEMELFRVGRTGPIVQKCYE..LSNS.VRGSLGDSGELLNKLLK----DKFTCFMTFETLCGCGKR.RDEQAGCWFWIM.PYTKP-----FPYGKCSICR....KTQIYKLTSMKGTGVFVQ....D---...P.....A...P..V.DF...DA..LpTMP.ICAs...aY..LG.S.R...G.SGH.YQ...-----..T..N..L.Y...---....--.-..---..--------------.-----------nvnkaidgfgvsdikngsintvcfvdvdydntqkeav..................................................................................
#=GR A0A1L2KGB4_9ALPC/1049-1270 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
H9TEX0_9ALPC/1036-1286 ......................vtsteedveivevsakddpwaaavdvqeaeqikpslpp---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----NEAWEKFKKGDVMDFVNLCYA..ATTL.ERGHSGDAEYLLELMLN--DYSTAKIVLA--ARCGCGEK.EIVL---ERTVF.KLSPLRNDFKYGV--CGDCM....QINNAGVVECLKDLVYLS....MIEWknaR.....P...V..S.DF...IV..K.PIM.HAV.....Y..IG.S.T...Q.SGH.YM...ID---..-..-..-.-...---....--.-..---..--------------.-----------dcehgycvdgmgikpckgklytstlfinanvmtrvekp.................................................................................
#=GR H9TEX0_9ALPC/1036-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_CVMA5/1608-1919 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIYKGKVFFQ.Y.SDLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YT..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSIDFMRVVLREADLSGATCNLE--FVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLVRGYNIACTCG....SKLV-HCTQFNVPFLICS....N--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.N..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR R1A_CVMA5/1608-1919 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVMA5/1608-1919 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
U5LR11_9BETC/1550-1873 ........................................................qqln----VEVLATVDGVNFRTVIL.NNKNTFRSQL.G.TVFLDGVDVSDTIPSVDKNGASVYI.A.DNFSKEEL.AAVK---..EMY....G....VeDPTF.L.YKY..YS..IR....AKvvK...WKM...AM..C..E..DAPSLCLNSNNCYLNAAVMMLDCLrD.IKFNIPALQAAYMKFKGGDFGDFISLLMA..YGNC.TYGQPDDASMLLHTALSKAELLVSARMVWREWCDHCGVK.DVVITGIKACVY.VGVQSLDELRECNHHICQCG....GVRFRQLVECVTPWLLLS....G---...P.....P...N..E.EL...VAnpD.FVA.FNV.....F..IG.HeA...G.VGH.FV...HARVK..K..G..LlYk.yDSG....TL.T..KAS..DWKCKVTDKLYPGQ.KYT--------aeceivvy...............................................................................................................
#=GR U5LR11_9BETC/1550-1873 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_CVH22/1599-1908 ............................................................EAKVITIKVTEDGVNVHDVTV.TTDKSFEQQV.G.VIADKDKDLSGAVPSDLNTSELLTK.A.IDVDWVEF.YGFKDAV..TFA....T....V.DHSA.F.A-Y..ES..AV....--..-...---...--..V..N..GIRVLKTSDNNCWVNAVCIALQYS.K.PHFISQGLDAAWNKFVLGDVEIFVAFVYY..VARL.MKGDKGDAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKfKNSVASINSAIV.CASVKRDGVQVGY---CVHG....IKYYSRVRSVRGRAIIVS....VEQL..eP.....C...A..Q.SR...LL..S.GVA.YTA.....F..SG.P.V...D.KGH.YT..vYDTAK..K..S..M.Y...DGD....RF.V..KHD..LSLLSVTSVVMVGG.Y----VAPVNTvkp....................................................................................................................
#=GR R1AB_CVH22/1599-1908 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVH22/1599-1908 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A4D6FTD3_9GAMC/1106-1410 ........................................................kpcr-----RFYVTSDGVSFKSFKA.HLNESLAVVV.GcTVYARNKQVQLV--RDLVE-DEIVY.I.PTVD----.---QAVL..DFY....G....L.DRFQ.F.VYY..LQ..AL....GH..E...WKT...YE..S..N..GVLQLEWQANNCFINAALVALQVS.G.MSFNDGFLKQAWASFLGGDPTEMVAWCYG..ILSC.DVGRMENHHGIVTALLRQQ--DLIAAFVRRRVTCSCGTV.ENVLRGINACYQpVMAANMAHFMTQH-GVCHCG....GNFVDVVVEMDVPYLYLV....TAAG...P.....K...V..V.QA...DG..E.SVF.NAC.....F..EG.S.I...N.SGHlYV...-QAKG..L..V..F.D...NLN....KK.R..KYS..RVSSYIDAFYSGV-.-----------kskvdcqet..............................................................................................................
#=GR A0A4D6FTD3_9GAMC/1106-1410 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0F6SKM6_9GAMC/1198-1506 ............................................................TCKQKGVYLTEDGTSFKTLVL.KPGDTLG-HL.G.GVFAKNKT---VFTADDVEDEEVLF.T.PTTD----.---KAVL..EYY....G....L.DAQK.Y.VIY..LQ..TL....SQ..K...WEV...QY..R..D..NFILLKWRDGNCWISSAMVLLQAA.K.IRFRG-FLAEAWAKFLGGDPTDFVAWCYA..SCNA.KVGDFSDCNWLLANLAEHFDADYTNALLKKRVSCNCGVK.SYELRGLEACIQpVRAPNLLHFKTQYSNCPTCG....ANSMDEVVEASLPYLLLV....ATDG...P.....A...A..V.DC...DE..N.AAG.NVV.....F..IG.S.T...N.SGHcYT...-QAVG..K..A..F.D...NLA....QD.R..KFG..KRSPYITAMYMRFS.LKSKNSLSVAK.......................................................................................................................
#=GR A0A0F6SKM6_9GAMC/1198-1506 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0K1Z0N1_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFYV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLIQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HVTAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR A0A0K1Z0N1_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_CVH22/1599-1908 ............................................................EAKVITIKVTEDGVNVHDVTV.TTDKSFEQQV.G.VIADKDKDLSGAVPSDLNTSELLTK.A.IDVDWVEF.YGFKDAV..TFA....T....V.DHSA.F.A-Y..ES..AV....--..-...---...--..V..N..GIRVLKTSDNNCWVNAVCIALQYS.K.PHFISQGLDAAWNKFVLGDVEIFVAFVYY..VARL.MKGDKGDAEDTLTKLSKYLANEAQVQLEHYSSCVECDAKfKNSVASINSAIV.CASVKRDGVQVGY---CVHG....IKYYSRVRSVRGRAIIVS....VEQL..eP.....C...A..Q.SR...LL..S.GVA.YTA.....F..SG.P.V...D.KGH.YT..vYDTAK..K..S..M.Y...DGD....RF.V..KHD..LSLLSVTSVVMVGG.Y----VAPVNTvkp....................................................................................................................
#=GR R1A_CVH22/1599-1908 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVH22/1599-1908 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
D9J203_9ALPC/1011-1256 .................vtdepivvsedveevvdeivsdvedetvtdddivspfafpnsm---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...--..I..N..GKVVLKQHQNNCWLNAAGYQLQCL.N.VL-----EDESFKQYCAGNVATFVQLMYA..VTNR.NIGDLGEAEYVLEQLLSSAQT----AKVKLSALCNCGTM.EELISGCVFRMR.CTSAT---FD--YGFCGVCN....TVKKTTIVGIEGTGVFVH....D---...P.....A...N..Y.KP...IV..K.PVC.KAI.....F..KG.S.T...T.GGH.YM..vHDVLA..K..V..L.V...DGF....GL.-..-HP..VQNLPFTSVCFVNA.NY---------vkdtpkca...............................................................................................................
#=GR D9J203_9ALPC/1011-1256 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHI6_9ALPC/1168-1393 ........................eevkpeevidvssdlddvnkalsfmmpqetkfvdpf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..K...FDY...FD..H..E..GIRVLRQNNNNCWVATTLVQLQLS.G.LLDD----DDSMALFKAGSVSPLVRKCYN..ATGA.IMGSLGDSSQCLEVLLKDL----HSMFITCDSTCGCGSG.TYELSG--SVFR.FMP-TRDSFDYGA--CTVCG....KVLKLKIKTLVGTGIFCQ....D-PK...P....fN...T..A.RA...IV..K.PIC.ASI.....Y..QG.S.T...T.SGH.YK...TNVYG..K..-..-.-...---....--.-..---..--------------.-----------rfcvdgsgvssi...........................................................................................................
#=GR B1PHI6_9ALPC/1168-1393 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A023YA54_MERS/1581-1907 .........................................................qql---TIEVLVTVDGVNFRTCVL.NNQSTYRAQV.G.CVFLDGADISDTIPDEKQNGLGLFL.A.DNLSAAEK.DVLK--Q..LYG....T....P.DDTF.L.YRY..YS..LKa..kVA..G...WKM...LV..C..D..KARSLRLSDANCYMNVVIMMLDLLrD.IRFTVPALQQAYIKHKGGDSTDFIALIMT..YGNC.TFGAPDDATRLLHIVLAKAELCVTARMVWREWCNVCGTK.DVTFQGLKACCY.VGMQTLDELRARTTYTCQCG....GERHRQLIEHNTPWLLLS....GKPS...E.....Q...I..V.ST...ATspD.FEA.FNV.....F..LG.SeT...S.VGH.YV...HVRVK..D..S..LlYk.yDSG....SL.T..KAS..DWKCKVTDILYPGQ.KYTS-------dcnvvvy................................................................................................................
#=GR A0A023YA54_MERS/1581-1907 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
U5WLB9_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR U5WLB9_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BCHK9/1424-1739 ..........................................................pl----IKVLTTVDGINYSTVLV.STAQSYRAQI.G.TVFCDGHDWSNKNPMPTDEGTHLYK.Q.---DNFSS.AEVTAIR..EYY....G....V.DDSN.IiARA..MS..IRk..tVQ..T...WPY...TV..V..D..GRVLLAQRDSNCYLNVAISLLQDI.D.VSFSTPWVCRAYDALKGGNPLPMAEVLIA..LGKA.TPGVSDDAHMVLSAVLNHGTVTA-RRVMQ-TVCEHCGVS.QMVFTGTDACTF.YGSVVLDDLYAPVSVVCQCG....RPAIRYVSEQKSPWLLMS....C--T...P.....T...Q..V.PL...DT..S.GIW.KTAi...vF..RG.P.V...T.AGH.YM...YAVNG..TliS..V.Y...DAN....TR.R..RTS..DLKLPATDILYGPT.SFTS-------dskve..................................................................................................................
#=GR R1AB_BCHK9/1424-1739 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BCHK9/1424-1739 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
C6GHE4_9ALPC/1052-1302 ......................................qlssvdekvevsakndpwaaav---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.DEQE.A.EQP..KP..SL....-A..A...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----HDLWGDFKKDDVMPFVNFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGIK.EIVL---ERTVF.KLTPLKDEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...M..S.QF...IV..E.PIM.HAV.....Y..TG.T.I...Q.NGH.YM..iEDCIH..D..-..-.-...---....--.-..---..--------------.-----------ycvdgmgikprkhkfytstlflnanvmtaesktkvg...................................................................................
#=GR C6GHE4_9ALPC/1052-1302 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_BC279/1547-1865 ............................................................EVRTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.PTYLDGADVTKIKPHAKHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..I..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNR.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKTCGQK.STTLTGVEAVMY.MGTLSYEELKTGVTIPCICG....RDATQYLVQQESSFVMMS....A---...P.....P...S..E.YT...LQ..Q.GAF.LCAn...eY..TG.S.Y...Q.CGH.YT...HVTVK..E..T..L.Yr.iDGA....YL.T..KMS..EYKGPVTDVFYKEI.SYTTTIKPVSY.......................................................................................................................
#=GR R1A_BC279/1547-1865 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BC279/1547-1865 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
I1VWF3_CVH22/995-1258 ...........dkeeevqqeqqedtvvpevevvvdqveevnssfaieavdvkhevspfem---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...-PF...EE..L..N..GLKILKQMDNNCWVNSVMLQLQLT.G.ILDD----DYAMQFFKMGRVSKMVERCYN..AEQC.IRGAMGDVGLCLYRLLKDLHTGFM--VMDYK----CSCT.SGRLEESGSVLF.CTPTKKA-F--PYGTCLNCN....APRMCTIRQLQGTIIFVQ....QNPE...P.....V...N..PcAF...VV..K.PVC.ASV.....F..RG.A.V...S.SGH.YQ...I----..-..-..-.-...---....--.-..---..--------------.-----------niypqklcvdgfgvnkiqpwpndalnticirdanysakvekpv............................................................................
#=GR I1VWF3_CVH22/995-1258 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A125R5A3_9ALPC/1019-1313 .tadaedvsetvsvvavedsveqvslveensvltpavnpdeqlssveenaevsakndpwa---------------------.----------.-.-------------------------.-.--------.-------..--A....A....V.DEQE.A.EQP..KP..SL....-T..P...FKT...TN..L..N..GKIILKQQDNNCWINACCYQLQAF.D.F-FN----HDLWDGFKKDDVMPFVEFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGVK.EIVL---ERTVF.KLTPLRNEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...V..S.QF...IV..P.PTM.HAV.....Y..TG.T.T...Q.NGH.YM..iDDCVQ..D..Y..C.V...DG-....--.-..---..--------------.-----------mgikprkhkfytstlflnanvmtadsktmvelhvp....................................................................................
#=GR A0A125R5A3_9ALPC/1019-1313 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
I1VWF3_CVH22/1606-1916 ............................................................ESKVITIKVTEDGVNVHDVTV.TTDKSFEQQV.G.VIAVKDKDLSGSVPSDLNTSELLTK.A.IDVDWVEF.YGFGDAV..TFA....T....V.DHSD.F.A-Y..DS..AV....--..-...---...--..V..N..GVRVLKTSDNNCWVNAVCISLQYL.K.PHFISQGLDAAWNKFVLGDVETFVAFVYY..VAGL.VKGAKGDAEDILNKLSKYLANEAQVQLEHYSSCVECEATfKNPVASVNSAIV.CASVKRDGVQVGY---CAHG....IKYYSRVRSVSGRAIIVS....VEQL..eP.....C...S..Q.SR...LL..S.GVA.YTA.....F..SG.P.A...D.NGH.YT..vYDTAK..K..S..M.Y...DGD....RF.V..KHD..LSLLSVTSVVMVGG.Y----VAPVK-tvkpk..................................................................................................................
#=GR I1VWF3_CVH22/1606-1916 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
U5WI49_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR U5WI49_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHG1_9ALPC/1450-1752 ........................................................tsvf------VVVTENGRDFETVAL.DTAKTFVEQV.G.VCTIDNVDVTNAVVTPTDEP-VSVA.T.PSVDWDAF.YGFENAS..VFH....T....L.DHSG.F.E-F..ES..TV....--..-...---...--..V..E..GKRTLKSSDNNCWVNAVCLQLQYL.D.AKFVSEGLNAMWDSYVTGNVSKFVHWLYW..ITDH.SKNDRNDAESVLLRLSVYLCKSCVFTIERETSSLCCS--.--ELRTYNACVV.SASVLRNGVSDGV---CKHG....DAYKSRVSAVDGIGIVVS....VSIP..dP.....V...P..K.SA...LL..D.GVS.YTT.....F..TG.D.V...G.SGH.YA...--VVD..R..K..L.YksfDGF....DV.K..PAS..LSSVSVTGVVVKTA.KFTRKVKQVA-t......................................................................................................................
#=GR A0A0U1WHG1_9ALPC/1450-1752 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
I1VWF4_CVH22/1606-1916 ............................................................ESKVITIKVTEDGVNVHDVTV.TTDKSFEQQV.G.VIAVKDKDLSGSVPSDLNTSELLTK.A.IDVDWVEF.YGFGDAV..TFA....T....V.DHSD.F.A-Y..DS..AV....--..-...---...--..V..N..GVRVLKTSDNNCWVNAVCISLQYL.K.PHFISQGLDAAWNKFVLGDVETFVAFVYY..VAGL.VKGAKGDAEDILNKLSKYLANEAQVQLEHYSSCVECEATfKNPVASVNSAIV.CASVKRDGVQVGY---CAHG....IKYYSRVRSVSGRAIIVS....VEQL..eP.....C...S..Q.SR...LL..S.GVA.YTA.....F..SG.P.A...D.NGH.YT..vYDTAK..K..S..M.Y...DGD....RF.V..KHD..LSLLSVTSVVMVGG.Y----VAPVK-tvkpk..................................................................................................................
#=GR I1VWF4_CVH22/1606-1916 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
T2B9U0_MERS/1481-1806 .........................................................qql---TIEVLVTVDGVNFRTVVL.NNKNTYRSQL.G.CVFFNGADISDTIPDEKQNGHSLYL.A.DNLTADET.KALK--E..LYG....P....V.DPTF.L.HRF..YSlkAA....VH..K...WKM...VV..C..D..KVRSLKLSDNNCYLNAVIMTLDLL.KdIKFVIPALQHAFMKHKGGDSTDFIALIMA..YGNC.TFGSPDDASRLLHTVLAKAELCCSARMVWREWCNVCGIK.DVVLQGLKACCY.VGVQTVEDLRARMTYVCQCG....GERHRQIVEHTTPWLLLS....GTPNe.kL.....V...T..T.ST...AP..D.FVA.FNV.....F..QGiE.T...A.VGH.YV...HARLK..G..G..L.IlkfDSG....TV.S..KTS..DWKCKVTDVLFPGQ.-----------kyssdcnvvr.............................................................................................................
#=GR T2B9U0_MERS/1481-1806 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BC512/1637-1948 ............................................................EAKPVQVVVTQDQRSFHTVEL.STSQTYGQQL.G.DCVVEDKKVTNLKPVS--KDKVVSV.V.PNVDWDKH.YGFVDAG..IFH....T....L.DHTM.F.V-F..DN..NV....--..-...---...--..V..N..GKRVLRTSDNNCWINAVCLQLQFA.N.AKFKPKGLQQLWESYCTGDVAMFVHWLYW..ITGV.EKGEPSDAENTLNIISRFLKPQGSVEMLR-ATSTTCDGT.CSTKRVVSTPVV.NASVLKVGLDDGN---CVHG....LPLVDRVVSVNGTVIITN....VGDT...PgkpvvA...T..E.NL...LL..D.GVS.YTV.....F..QD.S.T..tG.VGH.YT..vFDKEA..K..L..M.F...DGD....VL.K..PCD..LNVSPVTSVVVCNN.KKIVVQDPV--kr.....................................................................................................................
#=GR R1AB_BC512/1637-1948 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BC512/1637-1948 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A1L2KGB5_9ALPC/1604-1908 .......................................................ksdnv-----VLKVTEDGVNVKDVIV.DSSKSLDKQL.G.VVSDGVESLEGVLPT--KTDTVLSV.A.PAVDWVNF.YGFDNAA..LFA....S....L.DTKP.Y.N-Y..PN..DF....--..-...---...--..V..N..GFRVLKTTDNNCWINATCITLQYL.K.PNFKSEGLNALWNKFVTGDVGPFVSFIYF..ITGS.TKGQKGDSEETLSKLSEYLVSDSVVTLEQYTTCDLCES-.--NITTVKGAVV.CASVLKDGCEVGF---CPHR....HKLRSRVKSVRGRVVITN....V-DR...Pv...vA...Q..P.SR...LL..N.GIA.YTA.....F..SG.P.V...D.SGH.YT..vYDSLT..K..S..I.Y...DGD....RF.V..ASD..LSTLSITAVVVAGG.YMARDVTP---pvq....................................................................................................................
#=GR A0A1L2KGB5_9ALPC/1604-1908 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0K2RVJ3_9BETC/1565-1878 .........................................................fvd---KIDVLLTVDGVNFVTRYV.PCGEVFGKTL.G.NVFCDAINVTKCKAEQKYKGKVFFQ.F.DNLSNADL.KAVK---..SSF....N....F.DQKE.L.LAY..YN..VLv..nCG..K...WQI...VV..N..G..KYFTFKQANNNCFVNVACLMLQNV.N.LKFVSVQWQEAWLEFRAGKPLRFVALVYA..KGSF.KFGDPADARDFIRVVLSQT--DLADAACDYEIVCKCGVK.QEQRKGIDAVMH.FGTLNREDLENGYTIDCSCG....DKLIH-CTRIKVPFLICS....N---...T.....P...K..D.NV...LP..K.GVI.CAN....vF..TG.D.-...N.VGH.YT...HLRCD..S..S..Y.Ql.fDAS....NV.K..KIT..TVSGKITDCLYLKN.LK---------qtfrsvlt...............................................................................................................
#=GR A0A0K2RVJ3_9BETC/1565-1878 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHK0_9ALPC/1750-2051 .......................................................ttpsv------VKVTEDGRTVKDVVV.STTTTAGDQL.G.PCAVEGASLTTSVVTDVVN-SVVAV.A.PNVDWDSH.YGFKDAG..NFH....V....L.DHSA.Y.A-Y..DS..DF....--..-...---...--..V..D..GKRALAGSDNNCWVNATCLQLQFA.G.VEFLSKGVTAMWNEFLTGDVARFVHWLYW..LNGA.SKGDLGDVETTLNLVAKHAKPKGCVTIEKTTVDGCCVSE.----KRVNSLVV.NASVLRQGVGDGY---CQHG....NEYIIRVSRVEGTAIIVN....VGDP..sV.....K...A..P.NL...LI..S.GTA.YTA.....F..SG.P.I...D.AGH.YR..vYCSAT..S..K..V.F...DGK....SI.V..GGD..LCNLAVTSVVVVNK.FFK--------aevcna.................................................................................................................
#=GR B1PHK0_9ALPC/1750-2051 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A4D6FWB1_9GAMC/1106-1410 ........................................................kpcr-----RFYVTSDGVSFKSFKA.HLNESLAVVV.GcTVYARNKQVQLV--RDLVE-DEIVY.I.PTVD----.---QAVL..DFY....G....L.DRFQ.F.VYY..LQ..AL....GH..E...WKT...YE..S..N..GVLQLEWQANNCFINAALVALQVS.G.MSFNDGFLKQAWASFLGGDPTEMVAWCYG..ILSC.DVGRMENHHGIVTALLRQQ--DLIAAFVRRRVTCSCGTV.ENVLRGINACYQpVMAANMAHFMTQH-GVCHCG....GNFVDVVVEMDVPYLYLV....TAAG...P.....K...V..V.QA...DG..E.SVF.NAC.....F..EG.S.I...N.SGHlYV...-QAKG..L..V..F.D...NLN....KK.R..KYS..RVSSYIDAFYSGV-.-----------kskvdcqet..............................................................................................................
#=GR A0A4D6FWB1_9GAMC/1106-1410 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A3EXH3_BCHK9/1398-1716 .........................................................eal----IKVLTTVDGINYNTVLV.SGTQSYKAQI.G.KVFCDGKDWSDNKPMPKDEGAHLYK.Q.DNFS---L.EELAAMR..EYY....G....V.DDPNiI.ARA..MS..IRk..tVQ..T...WPY...TV..L..D..GRVLLAQRDSNCYLNVAISLLQDI.D.VSFSTPWVSRAYDALKGGNPLPMAEVLIA..LGKA.IPGESDDAHMVLSAVLNHGTV-VARRVMQ-TVCEHCGVN.QMVFTGTDACTF.YGSVVLDDLYAPVSVVCPCG....RPAIRYVSEQKSPWLLMS....C--T...P.....T...Q..V.PL...DT..N.GNW.KTAi...vF..RG.P.V...T.AGH.YM...YAVNG..TliS..V.Y...DAN....TR.K..RTS..DLKLPATDILYGPT.NFTSDSKVV--ty.....................................................................................................................
#=GR A3EXH3_BCHK9/1398-1716 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_BCHK4/1523-1848 ........................................................qqvn----IEVLVTIDGVNFRTVIL.NDTTTFRKQL.G.ATFYKGVDISDAFPTVKMGGESLFV.A.DNLSESEK.VVLK--E..YYG....T....S.DVTF.L.QRYysLQ..PL....VQ..Q...WKF...VV..H..D..GVKSLKLSNYNCYINATIMMIDMLhD.IKFVVPALQNAYLRYKGGDPYDFLALIMA..YGDC.TFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIR.DIEYTGMRACVY.AGVNSMEELQSVFNETCVCG....SVKHRQLVEHSAPWLLVS....GLNE..vK.....V...S..T.ST...DP..I.YRA.FNV.....F..QGvE.T...S.VGH.YV...HIRVK..D..G..L.FykyDSG....SL.T..KTS..DMKCKMTSVWYPTV.RYTA-------dcnvvvy................................................................................................................
#=GR R1A_BCHK4/1523-1848 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BCHK4/1523-1848 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
S5Z1D1_9ALPC/1674-1976 .........................................................dgq----FRVEVTQDQRTYSVKSL.DASKTMGEQL.G.TCSVDNTNVSDQRPTSDIS--KVTV.A.PAVDWDVH.YGFVGAA..SFH....I....L.NHEA.F.E-Y..PS..SV....--..-...---...--..Q..N..GKRVLKTSDNNCWVNAVCLQLQFA.N.AKFVGTGLQTLWDEYLVGNVAGFVHWLYW..LAGV.QKGDPGDAEDTLNLISKFLQSQGHVVVDRTTVDSCCSSQ.RTLVTP----VV.NGSILRMGVDDGA---CKHG....STFINKVVSINGTVILVN....V--G...P.....PissA..P.TS...FI..Q.GLS.YTS.....F..NN.T.V...GgVGH.YT..vYDSTQ..H..G..F.Y...DGD....VF.V..RGE..LAMQPVTALVARHS.HY---------vvkdpvks...............................................................................................................
#=GR S5Z1D1_9ALPC/1674-1976 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
E3W5I9_9ALPC/1489-1791 ..........................................................ng---TIPVKVTEDNVNQKRVSV.ALDKTYGEQLkG.TVVIKDKDVTNQLPSVSDVGEKVVK.A.VDVDWNAY.YGFPNAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..N..NFIAHKQTDNNCWVNATCLALQRL.K.PTWKFPGVKSLWDAFLTRKTAGFVHMLYH..ISGL.KKGQPGDAELTLHKLGELMVSDSVVTVTHTTACDKC-VK.VETFTGP---V-.-VAAPLLV--YGTDETCVHG....VSVNVKVTSVRGTVAITS....L--I...G.....P...V..V.GD...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..KNLLQVTTAIA---.-----------snfvadtlkkkivpt........................................................................................................
#=GR E3W5I9_9ALPC/1489-1791 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
C6GHE5_9ALPC/1487-1785 ..........................................................ng---TIPVKVTEDTVNQTRVSV.KLDKTYGEQLkG.TVVIKDKDVTNQLPSVSDVGEKVVK.A.LDVDWSAY.YGFPNAA..AFS....A....S.SHDA.Y.E--..--..--....--..-...FDV...VT..H..N..NFIVHKQTDNNCWVNATCLALQRL.K.PTWKFPGVKSLWDDFLTRKTAGFVHMLYH..ITGL.RKGQPGDAELTLHKLGELMSSDSVVTVTHTTACDKCA-K.VETFTG---PVV.AAPLM----IYGTDETCVHG....VSVNFKVTSVRGTVAVTS....L--I...G.....P...V..V.GE...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..RNLLQVTTAI----.-----------asnfiankpkek...........................................................................................................
#=GR C6GHE5_9ALPC/1487-1785 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_BCHK9/1424-1739 ..........................................................pl----IKVLTTVDGINYSTVLV.STAQSYRAQI.G.TVFCDGHDWSNKNPMPTDEGTHLYK.Q.---DNFSS.AEVTAIR..EYY....G....V.DDSN.IiARA..MS..IRk..tVQ..T...WPY...TV..V..D..GRVLLAQRDSNCYLNVAISLLQDI.D.VSFSTPWVCRAYDALKGGNPLPMAEVLIA..LGKA.TPGVSDDAHMVLSAVLNHGTVTA-RRVMQ-TVCEHCGVS.QMVFTGTDACTF.YGSVVLDDLYAPVSVVCQCG....RPAIRYVSEQKSPWLLMS....C--T...P.....T...Q..V.PL...DT..S.GIW.KTAi...vF..RG.P.V...T.AGH.YM...YAVNG..TliS..V.Y...DAN....TR.R..RTS..DLKLPATDILYGPT.SFTS-------dskve..................................................................................................................
#=GR R1A_BCHK9/1424-1739 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BCHK9/1424-1739 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1A_BCHK5/1557-1885 ..........................................................qq--KNVDVLVTIDGVNFRTVVL.NNTTTYRVQL.G.SVFYKGSDISDTIPTEKMSGEAVYL.A.DNLS----.EAEKAVLseVYG....T....A.DTAF.L.HRY..YS..LLa..lVK..K...WKY...TV..H..D..GVKSLKLNSNNCYVNVTMLMLDML.KeIKFIVPALQAAYLKHKGGDSTEFIALIMA..YGDC.TYGEPDDASRLLHTILSKAELTTQAKMVWRQWCNVCGVQ.DTTTTGLKACIY.VGMNSLDELHATHEECCQCG....DVRKRQLVEHNAPWLLLSglneAKVM..tP.....T...S..Q.SA...GP..D.YTA.FNV.....F..QGvE.T...S.VGH.YL...HVRVK..D..N..LlYk.yDSG....SL.S..KTS..DMKCKMTDVYYPKQ.RY---------sadcnvvv...............................................................................................................
#=GR R1A_BCHK5/1557-1885 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_BCHK5/1557-1885 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A088DIE1_9BETC/1680-2003 ..........................................................ml--KEVTVYTTVDGTNVNTKIL.ICSKSFGSQL.G.TCYIDGEDVTSVFPTKQHEGKIV-N.I.TQVDDVTS.SQVK---..EYY....G....VeDTSF.L.TRY..NS..ALm..hVN..R...WSF...AE..VpsT..GIFCIKWVANNCYLNAAILMLQQL.N.VEYETPAVREAAFEMRAGKPQRFVALMIA..YLKA.TIGHTGDAREAVRTMLSHAKVQGERHFVM--MCKKCGIR.RSQFHGLDAVMCfTTNTQLSDFLSGDEAGCTCG....DIVPVYQTHIRVPFLILS....TTEP...K.....M...Q..M.LN...CE..D.TKF.LCAn...nY..MG.T.L...S.SGH.YT...HVFNK..T..L..L.Ys.vNGT....RV.T..KMS..ETTTAVADAVYKDI.KYDT-------edqfvty................................................................................................................
#=GR A0A088DIE1_9BETC/1680-2003 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A140ESF0_9NIDO/1103-1286 lnrtivrtttdydqvttkaltpqgvleanlfdgedfvqepkpgqiylevteevqnqakel---------------------.----------.-.-------------------------.-.--------.-------..---....D....L.NLQQ.Y.CVY..LK..TC....HH..K...WVV...SR..T..N..GLMHLKQKDNNCFVSAGVNLFQNT.A.YQLRP-AIDALYREYLNGNPNRFVAWIYA..STNR.RVGEMGCPQQVISLLVSNSDA------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------afsattaccntyfnhtgvisva.................................................................................................
#=GR A0A140ESF0_9NIDO/1103-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1UZ20_9ALPC/1750-2051 .......................................................ttpsv------VKVTEDGRTVKDVVV.STTTTAGDQL.G.PCAVEGASLTTSVVTDVVN-SVVAV.A.PNVDWDSH.YGFKDAG..TFH....V....L.DHSA.Y.A-Y..DS..DF....--..-...---...--..V..D..GKRALAGSDNNCWVNATCLQLQFA.G.VEFLSKGVTAMWNEFLTGDVARFVHWLYW..LNGA.SKGDLGDVETTLNLVAKHAKPKGCVTIEKTTVDGCCVSE.----KRVNSLVV.NASVLRQGVGDGY---CQHG....NEYIIRVSRVEGTAIIVN....VGDP..sV.....K...A..P.NL...LI..S.GTA.YTA.....F..SG.P.I...D.AGH.YR..vYCSAT..S..K..V.F...DGK....NI.V..GGD..LCNLAVTSVVVVNK.FFK--------aevcna.................................................................................................................
#=GR A0A0U1UZ20_9ALPC/1750-2051 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_CVMA5/1608-1919 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIYKGKVFFQ.Y.SDLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YT..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSIDFMRVVLREADLSGATCNLE--FVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLVRGYNIACTCG....SKLV-HCTQFNVPFLICS....N--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.N..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR R1AB_CVMA5/1608-1919 SS .........................................................S-E----EEEEEESSSSSEEEEEE.ETTSBHHHHH.-.SEEETTEE-TTSB--GGGTT-EEEE.-.SS--HHHH.HHHHHH-..--H....-....-.-HHH.H.HHH..HH..HH...HH-..-...--E...EE..E..T..TEEEE-S-TT-HHHHHHHHHHTT-.-.---SSHHHHHHHHHHHTT--HHHHHHHHH..HSS-.-TT--B-HHHHHHHHHHHS--TT-EEEEE--EEETTEEE.EEEEETHHHHEE.ES-S-HHHHHH-EEEEETTE....EEEE-EEEEEE-SEEEEE....E--E...E.....E...-..-.--...-T..T.-SE.EEE.....E..EE.S.-...S.SEE.EE...EEETTTT-..E..E.E...ETT....EE.E..E-S..S--S-EEEEEEESS.--XX-------XXXXXX.................................................................................................................
#=GR R1AB_CVMA5/1608-1919 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVMA5/1608-1919 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A0U1UZ30_9ALPC/1582-1884 ...........................................................d-VQEVRIKVSYNDRDVQDVVV.KGDKVIDQQI.G.PCSTNNFDLTGVKPDDAIN-SVVNV.A.PEVDWISH.YGFPRAD..VWH....T....L.DHSA.Y.D-Y..ES..KE....--..-...---...--..Q..D..GVRVLKFSDNNCWVNATCIQLQIA.K.ITFRTEGIQAMWDEFLVGKVAKFVHWLYW..YQNS.SKGDPGDVEYTLNAISRYMANKSTVVISR-VATTECCND.TKT---IHTPVV.NVSLLRSGVEDGV---CQHG....NKYYSRLVSVKGTVIVTS....T-GK...P.....N...VypR.NA...LI..T.GDS.YTL.....Y..SG.D.V...K.DGH.YT..vFSVKG..D..K..I.F...DGE....NV.S.sNND..LSLYPVTSVVVSN-.-----------kviefekpa..............................................................................................................
#=GR A0A0U1UZ30_9ALPC/1582-1884 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B2BW32_9GAMC/1139-1441 ......................................................vsevvy-------YSTFDGVNYKTHKFsNLGKLVKDVI.GdKVYVDGVCVDNKPLFEIQPGSTFLR.LyPISD-ADK.QH---IK..NYY....E....L.SSKQ.Y.GVF..AA..VY....AR..E...HPI...IE..S..G..GLRYLKQKNNNCFVSTALVMLQHL.K.LEFKG-IVKELWSNFLAGDARGIVAYTYAllYPTV.KYGDMGDAEEVVLKYLNKAKLCA---QLTLNIKCKCGER.NHTFSGVDAVYC.IADVSTRHKALTSRIVCACD....-NVKSSIVYADLPFVFVH....R--N...V.....T...T..K.IK...LE..E.D-F.VCAn...iF.kHG.S.H...Y.CGT.--...-----..-..-..-.-...---....--.-..---..--------------.-----------namysydsmsskagkpilessfsaivfegffka......................................................................................
#=GR B2BW32_9GAMC/1139-1441 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
K4K1U5_9ALPC/1636-1939 ..........................................................es--AVVKVKVTHDGRDVHTVKV.KTDVVLDEQV.G.VCSLNNCDLTGVKPDDAIVD-VVSV.A.PEVDWISY.YGFPRAD..LYH....T....L.DHKQ.Y.A-Y..EN..SD....--..-...---...--..V..E..GKRVLKFSDNNCWVNTICLQLQFA.K.AIFKTEGLQAMWDEFLTGRVERFVHWLYW..YQNI.EKGQPGDVEYLLGRISRYLVNSGTVTISKDSVCCN--SKrTLTTPVVE----.-ASILKSGFDDGV---CKHG....NACVSRVSAVRGTVIVIQ....T-GK...P.....K...VypR.AA...LI..D.GDT.YTT.....Y..SG.S.V...E.DGH.YT..vFENKN..S..R..V.Y...DGD....TVsT..GND..LSTHAVSSVVVANK.LF---------ddpievvar..............................................................................................................
#=GR K4K1U5_9ALPC/1636-1939 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
Q5DIC6_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KML..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR Q5DIC6_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0S2ZX33_9GAMC/1176-1484 ............................................................TCKQKTIYLTEDGVKYRSVVL.KPGDSLS-QF.G.QVFAKNKA---VFTADDVEDKEILF.V.PTTD----.---KTVL..DYY....H....L.EAQK.Y.VIY..LQ..TL....AQ..K...WDV...QY..K..D..NFIVLEWRDGNCWVSSAIVLLQAA.K.VKFRG-YLAEAWAKFLGGEPTEFVAWCYA..SCNA.KVGDFSDINWLLANLAEYFDADYTNALLKKRVSCNCGVK.SYELRGIEACIQpVRAPNLLHFKTQYTNCPTCG....ANSTDEVIEASLPYLLLF....ATDG...P.....A...T..V.DC...DE..N.AVG.TVV.....F..IG.S.T...N.SGHcYT...-QAMG..T..A..F.D...NLA....KD.R..KFG..KKSPYITAMYTRLS.FKSENPL----svkq...................................................................................................................
#=GR A0A0S2ZX33_9GAMC/1176-1484 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_CVH22/994-1247 ..................qqaqqeatlpdiaedvvdqveevnsifdietvdvkhdvspfe---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...MPF...EE..L..N..GLKILKQLDNNCWVNSVMLQIQLT.G.I-LDG---DYAMQFFKMGRVAKMIERCYT..AEQC.IRGAMGDVGLCMYRLLKDLHTGFM--VMDYK----CSCT.SGRLEESGAVLF.CTPTKKA-F--PYGTCLNCN....APRMCTIRQLQGTIIFVQ....QKPE...P.....V...N.pV.SF...VV..K.PVC.SSI.....F..RG.A.V...S.CGH.YQ...TNIYS..Q..-..-.-...---....--.-..---..--------------.-----------nlcvdgfgvnkiqpwtndalnticikdadynakv.....................................................................................
#=GR R1A_CVH22/994-1247 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVH22/994-1247 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1A_SARS2/1564-1882 ............................................................EVRTIKVFTTVDNINLHTQVV.DMSMTYGQQF.G.PTYLDGADVTKIKPHNSHEGKTFYV.L.PNDDTLRV.EAFE---..YYH....T....T.DPSF.L.GRY..MS..ALn..hTK..K...WKY...PQ..V..N..GLTSIKWADNNCYLATALLTLQQI.E.LKFNPPALQDAYYRARAGEAANFCALILA..YCNK.TVGELGDVRETMSYLFQHANLDSCKRVLN-VVCKTCGQQ.QTTLKGVEAVMY.MGTLSYEQFKKGVQIPCTCG....KQATKYLVQQESPFVMMS....A---...P.....P...A..Q.YE...LK..H.GTF.TCAs...eY..TG.N.Y...Q.CGH.YK...HITSK..E..T..L.Yc.iDGA....LL.T..KSS..EYKGPITDVFYKEN.SYTTTIKPVTY.......................................................................................................................
#=GR R1A_SARS2/1564-1882 SS ............................................................---EEEEEEESSSSEEEEEEE.ETTS-HHHHH.S.SEEETTEE-TTS---CCCTT-EEEE.-.--SHHHHH.HHHH---..HHS....-....-.-TTH.H.HHH..HH..HHH..HHT..T...S--...-E..E..T..TEE---S-TTTHHHHHHHHHHTTS.-.--BSSHHHHHHHHHHHTT--HHHHHHHHH..HTT-.-TT----HHHHHHHHHHTB--TT-EEEEE-EEETTTEEE.EEEEECHHHHEE.ES-S-HHHHHH-EEEE-TTS....SEEEEEEEEEESSEEEEE....E---...E.....E...E..E.EE...EE..T.TS-.SEEE...EE..ES.S.T...T.T-E.EE...EEEES..S..S..E.EE.EETT....EE.E..EES..EEEEEEEEEEEE-S.EEE-S--XXXX.......................................................................................................................
#=GR R1A_SARS2/1564-1882 AS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_SARS2/1564-1882 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A0U1WHF6_9ALPC/1574-1876 ..........................................................kp--KDVRVKVTADGRNVNDVIV.TTTETFDAQL.G.PVSNGSESLVGVTPTVADNGKVVNT.V.PDVNWSKH.FGFSDAA..AFA....V....L.DHSK.F.A-F..DS..EI....--..-...---...--..V..D..GKRTLVDSDNNCWINATCLALQFL.K.PTFKYVGWEDLWNKFVTGDVSGFVHLLYY..IEGV.DKGAKGDVESTLSKLDKYIVSSGSVTIKRSTLCEHCDST.VK---TMTGAIV.EASVILNGHIDGH---CQHN....FDWRVQVVGVKGDIILLH....S--G...R.....I...L..E.GP...YL..H.GDA.YVA.....F..SG.D.T...D.NGH.YT..vFDNKL..S..K..M.Y...DGT....KC.V..KTT..LDTLTASSVVIRNG.SYAVK------sehvp..................................................................................................................
#=GR A0A0U1WHF6_9ALPC/1574-1876 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_IBVB/1174-1482 ............................................................TCKQKTIYLTEDGVKYRSIVL.KPGDSLG-QF.G.QVYAKNKI---VFTADDVEDKEILY.V.PTTD----.---KSIL..EYY....G....L.DAQK.Y.VIY..LQ..TL....AQ..K...WNV...QY..R..D..NFLILEWRDGNCWISSAIVLLQAA.K.IRFKG-FLTEAWAKLLGGDPTDFVAWCYA..SCTA.KVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCNCGIK.SYELRGLEACIQpVRATNLLHFKTQYSNCPTCG....ANNTDEVIEASLPYLLLF....ATDG...P.....A...T..V.DC...DE..D.AVG.TVV.....F..VG.S.T...N.SGHcYT...-QAAG..Q..A..F.D...NLA....KD.R..KFG..KKSPYITAMYTRFA.FKNETSLPVAK.......................................................................................................................
#=GR R1AB_IBVB/1174-1482 SS ............................................................CXXXEEEEEESSSSSXEEEEE.XTTXXGG-GG.S.SXBXSSSX---XSSGGGXXTTXEEE.X.XX------.---HHHH..CCC....T....-.-HHH.H.HHH..HH..HT....T-..-...--E...EE..E..T..TEEEE---TTTHHHHHHHHHHHHT.T.--B-T-CHHHHHHHHHTT--HHHHHHHHH..HTT-.-TT--B-HHHHHHHHHTTB-S-TTT-EEEEEEEETTEEE.EEEEEHHHHHEEEESSSSHHHHHEEEEE-TTTS....SEEEEEEEEEEEEEEEEE....ESSS...-.....E...E..E.E-...-T..T.-SE.EEE.....E..EC.-.T...T.SEEEEE...-EETT..E..E..E.-...SS-....TT.-..---..SEEEEEEEEEEEEE.EE----XXXXX.......................................................................................................................
#=GR R1AB_IBVB/1174-1482 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_IBVB/1174-1482 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1AB_CVH22/994-1247 ..................qqaqqeatlpdiaedvvdqveevnsifdietvdvkhdvspfe---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...MPF...EE..L..N..GLKILKQLDNNCWVNSVMLQIQLT.G.I-LDG---DYAMQFFKMGRVAKMIERCYT..AEQC.IRGAMGDVGLCMYRLLKDLHTGFM--VMDYK----CSCT.SGRLEESGAVLF.CTPTKKA-F--PYGTCLNCN....APRMCTIRQLQGTIIFVQ....QKPE...P.....V...N.pV.SF...VV..K.PVC.SSI.....F..RG.A.V...S.CGH.YQ...TNIYS..Q..-..-.-...---....--.-..---..--------------.-----------nlcvdgfgvnkiqpwtndalnticikdadynakv.....................................................................................
#=GR R1AB_CVH22/994-1247 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_CVH22/994-1247 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
Q5DIC7_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KML..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR Q5DIC7_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
E3W5I9_9ALPC/1016-1307 ...........................................nltadvedvslvkeetv---------------------.----------.-.AVADVDNSVEQVTPVEDNSSEQLVS.V.EEKV--DV.SAKN-DP..WAA....A....V.DEQE.A.EQP..KP..SV....-T..P...FRT...TN..L..N..GKIIIKQQDNNCWINACCYQLQAF.D.F-FN----HDLWNGFKKDDIMPFVDFCYA..ALTL.KQGDSGDAEYLLETML----NDYSTAKVTLSAKCGCGVK.EIVLKR--TVFK.LTPLK-NEFKYGV--CGDCK....QINMCKFASVEGSGVFVHd..rIEKQ...T.....P...E..S.QF...IV..T.PTM.HAV.....Y..TG.T.T...Q.NGH.YM..iEDCIH..D..Y..C.V...DGMgikpRK.H..KFY..TSTLFLNANVMTAE.F-KTTIEP---tv.....................................................................................................................
#=GR E3W5I9_9ALPC/1016-1307 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B6VDX7_THCOV/1079-1257 .....................................................qlwdaln-----------------RVVV.RTTKDFD-QI.T.TQALTP---QGVLDANLFDGDKFVQ.E.PQPDC-VY.LAVDDVV..QTKakdlG....L.SLSQ.Y.CSY..LK..MC....HH..K...WAT...VR..T..N..GILHLKQKDNNCFISAAINLFQVT.H.YKLRP-VIDELYQEYVNGNPNRLVAWIYA..SINQ.NIGEMGCPQQVTSLLVSNA--------------------.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------nskffgtvhcckty.........................................................................................................
#=GR B6VDX7_THCOV/1079-1257 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0K1YZY7_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFYV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLIQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HVTAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR A0A0K1YZY7_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A125R5A4_9ALPC/1493-1792 ..........................................................ng---TIPVKVTEDTVNHKRVSV.ALDKTYGEQLkG.TVVIKDKDVTNQLPSVSDAGEKVVK.A.LDVDWNAH.YGFINAA..AFS....A....S.SHDA.Y.K--..--..--....--..-...FEV...VT..H..N..NFIVHKQTDNNCWVNAICLALQRL.K.PTWKFPGVKSLWNDFLVRKTAGFVHMLYH..ISGL.RRGQPGDAELTLHKLGELMLSDGTVTITHTTACDKCA-K.TEIFTGP-----.VVAAPLLV--YGTDETCVHG....VSVNVKVTSVRGTVAITS....L--I...G.....P...V..V.GD...VI..D.ATG.YIC.....Y..TG.L.N...S.RGH.YT..yYDNRN..G..L..M.V...DAE....KA.Y..HFE..KNLLQVTTAIASN-.FCTETV-----pknq...................................................................................................................
#=GR A0A125R5A4_9ALPC/1493-1792 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R9QTB2_SARS/1533-1851 ............................................................EVKTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.STYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALs..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSYK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDELKTGVSIPCVCG....RNATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR R9QTB2_SARS/1533-1851 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BC133/1530-1855 ........................................................qqvn----IEVLVTIDGVNFRTVIL.NDATTFRKQL.G.ATFYKGVDISDALPTVKMGGESLFV.A.DNLSESEE.VVLK--E..YYG....T....S.DVTF.L.QRYysLQ..PL....VQ..Q...WKF...VV..H..D..GVKSLKLSNYNCYINATIMMIDMLhD.IKFVVPALQNAYLRYKGGDPYDFLALIMA..YGDC.TFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIR.DIEYTGMRACVY.AGVNSMEELQSVFNETCVCG....SVKHRQLVEHSTPWLLVS....GLNE..vK.....V...S..T.ST...DP..V.YRA.FNV.....F..QGvE.T...S.VGH.YV...HVRVK..D..G..L.FykyDSG....SL.T..KTS..DMKCKMTSVWYPKV.RYTA-------dcnvvvy................................................................................................................
#=GR R1AB_BC133/1530-1855 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BC133/1530-1855 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
Q9J3E9_9BETC/1605-1916 .........................................................ank----VDVLCTVDGVNFRSCCV.AEGEVFGKTL.G.SVFCDGINVTKVRCSAIYKGKVFFQ.Y.SDLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YT..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.S.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSIDFMRVVLREADLSGATCNLE--FVCKCGVK.QEQRKGVDAVMH.FGTLDKGDLVRGYNIACTCG....SKLV-HCTQFNVPFLICS....N--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.VGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.N..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR Q9J3E9_9BETC/1605-1916 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WJY1_SARS/1538-1856 ............................................................EVKTIKVFTTVDNTNLHTQIV.DMSMTYGQQF.G.PTYLDGADVTKIKPHFNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQV.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESARRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDDLKTGVSIPCVCG....RSATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR A0A0U1WJY1_SARS/1538-1856 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A8JNZ1_9ALPC/1038-1255 ..................................................raispfgfdt---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...NE..I..N..GRRVLYQSNNNCWVNAACYQLQVL.-.-GFDSPA----MELYRVGGTHNLVKQCYE..ATGA.FLGSLGDVAHCLEVLLKDAK--TAK-V-TVEVTCDCSSN.FEELSGA--FFR.FLP---LRSKFEYGSCFACH....GTRYYRVCGIVGSAIFSQ....T-LK...P.....L...D..F.ND...LI..C.DVAsASV.....F..LG.D.-...D.CGH.YL..iNDYDK..R..L..C.V...DGM....GV.Y..KIR..HNTID-TIVVKDAD.IKPSTVAP---fte....................................................................................................................
#=GR A8JNZ1_9ALPC/1038-1255 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A8JNZ1_9ALPC/1585-1887 ..........................................................kp--KDVKVKVTADGRNVNDVVV.TTAETFDAQL.G.PSANGVESLVGVVPTPMDSGRVVNT.A.PDVNWSKH.FGFSDAA..AFA....V....L.DHSK.F.A-F..DS..EV....--..-...---...--..V..D..GKRALADSDNNCWVNATCLALQFL.K.PTFKYVGWEDLWNKLRSGDVAGFVHLLYY..IEGV.DKGAKGDVESTLSKLDKYIVSSGSVTVERSTLCDRC---.NSTVKTVTGAIA.EASVILNGHADGH---CPHN....FEWRVQVVGVKGDIILLH....SGSL...-.....-...L..N.GP...YV..Y.GDA.YVA.....F..SG.N.I...D.NGH.YT..vFDNKL..S..K..M.Y...DGI....KC.V..KTT..LDTLVASSVVIRNG.SYAV-------ktehvp.................................................................................................................
#=GR A8JNZ1_9ALPC/1585-1887 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1X9JQL5_9ALPC/1072-1289 ...........................................gshvainvnkfsttplv---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...-V..R..G..GYKHLQLRDNNCWANAVFVGLQLC.N.YYDNG---NVEWQCALSGANSRFLEHVYD..ANKT.FYGSTADAAQALER---MLDGDTCMTVTL-QCSCVCGGE.TVTLKA--SVFK.FRPVNGF-F--DYGVCPVCD....AKIKALILHIDGKGFFCY....T---...A.....T...R..D.SK...LLfpG.CVG.EIV.....Y..TG.A.D...I.GGH.YY...-IKYD..G..G..Y.H...DGT....-G.T..KHS..VKARSQVAVYN---.-----------vvglpkp................................................................................................................
#=GR A0A1X9JQL5_9ALPC/1072-1289 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A059VJE6_9ALPC/1629-1934 ..........................................................an--KSVVIKVTEDTRSVKTVKV.ESTVTYGQQI.G.PCLVNDTVVTDNKPVVA--DVVAKV.V.PSANWDSH.YGFDKAG..EFH....M....L.DHTG.F.A-F..PS..EV....--..-...---...--..V..N..GRRVLKTTDNNCWVNVTCLQLQFA.R.FRFKSAGLQAMWESYCTGDVAMFVHWLYW..LTGV.DKGQPSDSENALNMLSKYIVPAGSVTIER-VTHDGCCCS.---KRVVTAPVV.NASVLKLGVEDGL---CPHG....LNYIDKVVVVKGTTIVVN....VGKP...V.....V...A.pS.HL...FL..K.GVS.YTT.....FldNG.N.G...V.AGH.YT..vFDHDT..G..M..V.H...DGD....VF.V..PGD..LNVSPVTNVVVSEQ.TAVVIKDPV--kk.....................................................................................................................
#=GR A0A059VJE6_9ALPC/1629-1934 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0A7UXS1_9BETC/1615-1924 ..........................................................kn---VVEVLLTVDGFNFKTKSV.VCGEAFSKQV.G.NVFCENVDVTKHIVSKEYAGKVLYQ.F.ENLSEAEL.ESVK---..QSF....G....F.DQKQ.L.LAY..YS..YR...sCC..R...WEV...VV..H..R..KWFCFKQADNNCYCNAACLMLQNL.N.LTFKLQQWQEAWLEFRAGRPLRFVALVLA..KGAF.VYGQPADARDFMRVALSQADLSSAS--CEYEFICKCGVK.VEKRDGIDAVMF.YGTCDKQALEKGTTTDCSCG....PK-TVHVLSMNVPFFIGS....Q---...A.....P...A..V.GA...LP..N.GCA.AAN....lY..KG.G.-...A.VGH.YT...HVKNG..K..Q..L.Tc.fDAH....NV.K..KCT..TLVDGVTDCLYTN-.-----------vpkqtfesc..............................................................................................................
#=GR A0A0A7UXS1_9BETC/1615-1924 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
D9J202_9ALPC/1012-1256 ..................tdepivvsedveevvdeivsdvedetvtdddivspfafpnsm---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...--..I..N..GKVVLKQHQNNCWLNAAGYQLQCL.N.VL-----EDESFKQYCAGNVATFVQLMYA..VTNR.NIGDLGEAEYVLEQLLSSAQT----AKVKLSALCNCGTM.EELISGCVFRMR.CTSAT---FD--YGFCGVCN....TVKKTTIVGIEGTGVFVH....D---...P.....A...N..Y.KP...IV..K.PVC.KAI.....F..KG.S.T...T.GGH.YM..vHDVLA..K..V..L.V...DGF....GL.-..-HP..VQNLPFTSVCFVNA.NY---------vkdtpkca...............................................................................................................
#=GR D9J202_9ALPC/1012-1256 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1A_IBVB/1174-1482 ............................................................TCKQKTIYLTEDGVKYRSIVL.KPGDSLG-QF.G.QVYAKNKI---VFTADDVEDKEILY.V.PTTD----.---KSIL..EYY....G....L.DAQK.Y.VIY..LQ..TL....AQ..K...WNV...QY..R..D..NFLILEWRDGNCWISSAIVLLQAA.K.IRFKG-FLTEAWAKLLGGDPTDFVAWCYA..SCTA.KVGDFSDANWLLANLAEHFDADYTNAFLKKRVSCNCGIK.SYELRGLEACIQpVRATNLLHFKTQYSNCPTCG....ANNTDEVIEASLPYLLLF....ATDG...P.....A...T..V.DC...DE..D.AVG.TVV.....F..VG.S.T...N.SGHcYT...-QAAG..Q..A..F.D...NLA....KD.R..KFG..KKSPYITAMYTRFA.FKNETSLPVAK.......................................................................................................................
#=GR R1A_IBVB/1174-1482 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_IBVB/1174-1482 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
R1A_CVPPU/1025-1286 .........................................sqeevetvevaditsteed---------------------.----------.-.-------------------------.-.--VDIVEV.SAKD-DP..WAA....A....V.DVQE.A.EQF..NP..SL....-P..P...FKT...TN..L..N..GKIILKQGDNNCWINACCYQLQAF.D.F-FN----NEAWEKFKKGDVMDFVNLCYA..ATTL.ARGHSGDAEYLLELMLN--DYSTAKIVLA--AKCGCGEK.EIVLE--RAVFK.LTPLK-ESFNYGV--CGDCM....QVNTCRFLSVEGSGVFVHd.ilSKQT...P.....E...A..M.F-...VV..K.PVM.HAV.....Y..TG.T.T...Q.NGH.YM...VD---..-..-..-.-...---....--.-..---..--------------.-----------diehgycvdgmgikplkkrcytstlfinanvmtraekp.................................................................................
#=GR R1A_CVPPU/1025-1286 SS .........................................XXXXXXXXXXXXXXXXXXX---------------------.----------.-.-------------------------.-.--XXXXXX.XXXX-XX..XXX....X....X.XXXX.X.XXX..XX..--....--..-...--E...EE..E..T..TEEEE---TT-HHHHHHHHHHTT-.T.T--------HHHHHHTTT--HHHHHHHHH..HHT-.-TTS---HHHHHHHHHT--T---EEEEEE--EEETTEEE.EEEEE--ESEEE.S--BS-S-EEEEE---TTT-....-EEEEEEEEEEEEEEEEEE.EE-S--...-.....G...G..G.B-...SS..-.-SE.EEE.....E..ES.-.T...T.T-E.EE...EE---..-..-..-.-...---....--.-..---..--------------.-----------ETTTTEEEETTEEE----S-EEEEEEEEEEEE-XXXXX.................................................................................
#=GR R1A_CVPPU/1025-1286 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1A_CVPPU/1025-1286 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A0U1UZ20_9ALPC/1141-1360 .............................................ealsfivdepsafvd---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..P...FKF...EY..Y..DhaGVRVLKQEVNNCWVASTLVQLQLY.-.-GFDS----DAMSLFKAGSVSPMVRRCYE..AVGA.IRGSLGDVSQCLEKLL----SDSHTMFMTFDVKCDCGAS.VAEMSG---AVF.RFMPTRDSFNYGA--CPTCR....SVMVYKIKSMQGTGFFCQ....DPKP...F.....N...T..A.RS...LV..R.PVS.ASV.....Y..SG.R.T...D.GGH.YK...-----..-..-..-.-...---....--.-..---..--------------.-----------tniydarvcvdgfgvtsittgnvnvillrdasy......................................................................................
#=GR A0A0U1UZ20_9ALPC/1141-1360 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
U5KNA9_9BETC/1550-1873 ........................................................qqln----VEVLATVDGVNFRTVIL.NNKNTFRSQL.G.TVFLDGVDVSDTIPSVDKNGASVYI.A.DNFSKEEL.AAVK---..EMY....G....VeDPTF.L.YKY..YS..IR....AKvvK...WKM...AM..C..E..DAPSLCLNSNNCYLNAAVMMLDCLrD.IKFNIPALQAAYMKFKGGDFGDFISLLMA..YGNC.TYGQPDDASMLLHTALSKAELLVSARMVWREWCDHCGVK.DVVITGIKACVY.VGVQSLDELRECNHHICQCG....GVRFRQLVECVTPWLLLS....G---...P.....P...N..E.EL...VAnpD.FVA.FNV.....F..IG.HeA...G.VGH.FV...HARVK..K..G..LlYk.yDSG....TL.T..KAS..DWKCKVTDKLYPGQ.KYT--------aeceivvy...............................................................................................................
#=GR U5KNA9_9BETC/1550-1873 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0K2RW65_9BETC/1565-1878 .........................................................fvd---KIDVLLTVDGVNFVTRYV.PCGEVFGKTL.G.NVFCDAINVTKCKAEQKYKGKVFFQ.F.DNLSNADL.KAVK---..SSF....N....F.DQKE.L.LAY..YN..VLv..nCG..K...WQI...VV..N..G..KYFTFKQANNNCFVNVACLMLQNV.N.LKFVSVQWQEAWLEFRAGKPLRFVALVYA..KGSF.KFGDPADARDFIRVVLSQT--DLADAACDYEIVCKCGVK.QEQRKGIDAVMH.FGTLNREDLENGYTIDCSCG....DKLIH-CTRIKVPFLICS....N---...T.....P...K..D.NV...LP..K.GVI.CAN....vF..TG.D.-...N.VGH.YT...HLRCD..S..S..Y.Ql.fDAS....NV.K..KIT..TVSGKITDCLYLKN.LK---------qtfrsvlt...............................................................................................................
#=GR A0A0K2RW65_9BETC/1565-1878 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R1AB_BCHK4/1523-1848 ........................................................qqvn----IEVLVTIDGVNFRTVIL.NDTTTFRKQL.G.ATFYKGVDISDAFPTVKMGGESLFV.A.DNLSESEK.VVLK--E..YYG....T....S.DVTF.L.QRYysLQ..PL....VQ..Q...WKF...VV..H..D..GVKSLKLSNYNCYINATIMMIDMLhD.IKFVVPALQNAYLRYKGGDPYDFLALIMA..YGDC.TFDNPDDEAKLLHTLLAKAELTVSAKMVWREWCTVCGIR.DIEYTGMRACVY.AGVNSMEELQSVFNETCVCG....SVKHRQLVEHSAPWLLVS....GLNE..vK.....V...S..T.ST...DP..I.YRA.FNV.....F..QGvE.T...S.VGH.YV...HIRVK..D..G..L.FykyDSG....SL.T..KTS..DMKCKMTSVWYPTV.RYTA-------dcnvvvy................................................................................................................
#=GR R1AB_BCHK4/1523-1848 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GR R1AB_BCHK4/1523-1848 sAS ........................................................................................................................................................................................................................................................................................................................................................................................................................................*............................................................................................................................................................................................
A0A0U1UZA8_9ALPC/1125-1392 ..................................................vvedviaade---------------------.----------.-.--------VVDVETTTQVEEVTVVE.A.IEEDIVKP.EEVIDVS..SDI....E....A.VNQA.L.S-F..MK..PTetkfVD..P...FKF...DYydH..E..GIRVLRQNNNNCWVASTLVQLQLS.G.LLDD----DDTMALFKAGSVSPLVRKCYD..AVGA.IVGSLGDASHCLEVLLKDL----HTMFITCDATCGCGSS.SYELSG--SVFR.FMP-TRDSFSYGA--CGVCG....KTLKLKIKTMTGTGFFCQ....DP-K...P....fN...T..A.RA...IV..K.PVC.ASI.....Y..QG.S.T...T.SGH.YK...TNVFG..K..R..F.-...---....--.-..---..--------------.-----------cvdgsgvssisnghintillk..................................................................................................
#=GR A0A0U1UZA8_9ALPC/1125-1392 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
C6GHR8_9BETC/1606-1917 .........................................................ank----VDVLCTVDGVNFRSCCV.TEGEVFGKTL.G.SVFCDGINVTKVRCSAIHKGKVFFQ.Y.SGLSEADL.VAVKDA-..--F....G....F.DEPQ.L.LKY..YN..ML...gMC..K...WPV...VV..C..G..NYFAFKQSNNNCYINVACLMLQHL.N.LKFPKWQWQEAWNEFRSGKPLRFVSLVLA..KGSF.KFNEPSDSTDFIRVVLREADLSGATCDLE--FICKCGVK.QDQRKGVDAVMH.FGTLDKSDLVKGYNIACTCG....SKLV-HCTQFNVPFLICS....Y--T...P.....E...G..R.KL...PD..D.VVA.ANI.....F..TG.G.-...S.LGH.YT...HVKCKpkY..Q..L.Y...DAC....NV.S..KVS..EAKGNFTDCLYLKN.LKQT-------fssvlt.................................................................................................................
#=GR C6GHR8_9BETC/1606-1917 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0U1WHG1_9ALPC/909-1107 .......................................................pfafe---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...--F...TD..Y..C..GLKVLKQVNNNCWVASACLHMQLL.D.LLD-T----PAMDLYKCGRVGPLVQSCYE..SVKQ.LVGSMGDVTECLEHMLKDV--KSCVVVCD--AVCDCGTK.DLTIEG---CVF.-RFMPCSEPLERW--CAVCN....SMAACTIKGIKGTAIFCQ....K-PG...-.....P...A..N.DL...YV..E.PYC.AAS.....F..IG.S.V...T.SGH.YRtnvYHT--..-..-..-.-...---....--.-..---..--------------.-----------gkavdgfgvhdidntnlhtyavk................................................................................................
#=GR A0A0U1WHG1_9ALPC/909-1107 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
S5Z1D1_9ALPC/1084-1219 ................................eeeevndalsfmtesspkpceptsdtfa---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...YPF...KD..Y..N..GVKVLDQQSNNCWVNSTLLQLQLL.G.VI--G--DDSAMALFKVGRVGPMVKRCYE..AVGA.IKGSLGDVSQCMEVLLRDVK----TLTVHCDTVCDCGSG.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------aktfvgcafrfe...........................................................................................................
#=GR S5Z1D1_9ALPC/1084-1219 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
Q6UZF1_SARS/1541-1859 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQL.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMTHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSIPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR Q6UZF1_SARS/1541-1859 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
B1PHI6_9ALPC/1848-2154 .........................................................dtk----TTVKVSLDGRNVVDVDV.AADKTIGEQL.N.ACTTDNVIISNSVVT-DVIDTVVNV.A.PEADWDTF.YGFPNAA..EFH....M....L.DHSA.Y.A-F..DS..DV....--..-...---...--..V..D..GKRALVGTDNNCWVNAVCLQLQFA.E.VDFTSEGLKDMWNEFLVGNVAKFCHWLYW..LVRA.TKGDAGDAENALNMLAKYVKAHGTITITR-ETDDGCCAN.EHR---ISSFVV.NASVLRSGCTDGY---CKHG....NAYTACVSKVDGVSVIVN....V-DR...P.....Sv.mS..D.NL...LL..T.GTS.YTA.....F..SG.P.M...D.SGH.YR..vYNPVT..S..K..M.F...DGA....NC.V..GGD..LCNLAVTAVVVKNKvFKMQTS-----nsntpvk................................................................................................................
#=GR B1PHI6_9ALPC/1848-2154 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A0F6WGL5_9GAMC/1198-1506 ............................................................TCKQKGVYLTEDGTSFKTLVL.KPGDTLG-HL.G.GVFAKNKT---VFTADDVEDEEVLF.T.PTTD----.---KAVL..EYY....G....L.DAQK.Y.VIY..LQ..TL....SQ..K...WEV...QY..R..D..NFILLKWRDGNCWISSAMVLLQAA.K.IRFRG-FLAEAWAKFLGGDPTDFVAWCYA..SCNA.KVGDFSDCNWLLANLAEHFDADYTNALLKKRVSCNCGVK.SYELRGLEACIQpVRAPNLLHFKTQYSNCPTCG....ANSMDEVVEASLPYLLLV....ATDG...P.....A...A..V.DC...DE..N.AAG.NVV.....F..IG.S.T...N.SGHcYT...-QAVG..K..A..F.D...NLA....QD.R..KFG..KRSPYITAMYMRFS.LKSKNSLSVAK.......................................................................................................................
#=GR A0A0F6WGL5_9GAMC/1198-1506 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
R9QTH2_SARS/1542-1860 ............................................................EVKTIKVFTTVDNTNLHTQLV.DMSMTYGQQF.G.PTYLDGADVTKIKPHVNHEGKTFFV.L.PSDDTLRS.EAFE---..YYH....T....L.DESF.L.GRY..MS..ALn..hTK..K...WKF...PQ..V..G..GLTSIKWADNNCYLSSVLLALQQI.E.VKFNAPALQEAYYRARAGDAANFCALILA..YSNK.TVGELGDVRETMAHLLQHANLESAKRVLN-VVCKHCGQK.TTTLTGVEAVMY.MGTLSYDNLKTGVSVPCVCG....RDATQYLVQQESSFVMMS....A---...P.....P...A..E.YK...LQ..Q.GTF.LCAn...eY..TG.N.Y...Q.CGH.YT...HITAK..E..T..L.Yr.iDGA....HL.T..KMS..EYKGPVTDVFYKET.SYTTTIKPVSY.......................................................................................................................
#=GR R9QTH2_SARS/1542-1860 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1B3Q5W8_9BETC/1466-1787 .......................................................ekktl----TKVLTTVDGVNYSTVLV.DDERTFQDQI.G.VVFHNGVDISSRVPNSDDANIQ---.L.FKQDNFSP.EEVQAIS..DYY....G....V.NDCT.V.VAR..AL..SVr.ryVR..T...WPY...SV..V..D..GRVLLAQRDSNCYLNAAISVLQDI.E.VEFSTPWISTAFDALKGGNPLPIVEVLIT..LGKT.TIGEPDDAHMILSSLLSYASVKAARRAIT-TVCENCGSS.QEIIEGVPACLH.YGTVQLDDLYKPESIVCPCG....KAAIRFVSLQQTPWVLMS....H--V...P.....T...N..V.PL...DT..T.GNW.FSAv...vF..KG.P.V...T.CGH.YM...YAVNG..SliS..V.Y...DAN....TR.K..RTS..DLLVPATDILYKDV.NFTTSSKVV--tf.....................................................................................................................
#=GR A0A1B3Q5W8_9BETC/1466-1787 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A059VJE6_9ALPC/1018-1285 ..............ssdpdkvadvansepeddglnvapetnveseveevaatlsfikdtp---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..-S..TV....TK..DpfaFDF...AS..Y..G..GLKVLRQSHNNCWVTSTLVQLQLL.G.IVD-----DPAMELFSAGRVGPMVRKCYE..SQKA.ILGSLGDVSACLESLTKDLHT---LKITC-SVVCGCGT-.------------.--------------------....------------------....----...-.....-...-..-.--...--..-.---.---.....-..--.-.-...-.---.--...-----..-..-..-.-...---....--.-..---..--------------.-----------geriydgcafrmtptlepfpygacaqcaqvlmhtfksivgtgifcrdttalsldslvvkplcaaafigkdsghyvtnfydaamaidgygrhqikydtlnticvkdvnwtapfvpdvepv
#=GR A0A059VJE6_9ALPC/1018-1285 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
A0A1L2KGB5_9ALPC/1049-1270 .................................................sapvpehpfaf---------------------.----------.-.-------------------------.-.--------.-------..---....-....-.----.-.---..--..--....--..-...---...PF..R..DelGVRVLNQAENNCWINTTLIQLQLT.K.LLEES----VEMELFRVGRTGPIVQKCYE..LSNS.VRGSLGDSGELLNKLLK----DKFTCFMTFETLCGCGKR.RDEQAGCWFWIM.PYTKP-----FPYGKCSICR....KTQIYKLTSMKGTGVFVQ....D---...P.....A...P..V.DF...DA..LpTMP.ICAs...aY..LG.S.R...G.SGH.YQ...-----..T..N..L.Y...---....--.-..---..--------------.-----------nvnkaidgfgvsdikngsintvcfvdvdydntqkeav..................................................................................
#=GR A0A1L2KGB5_9ALPC/1049-1270 pAS ....................................................................................................................................................................................................................*................................................................................................................................................................................................................................................................................................................................................................................................................
#=GC SS_cons .........................................XXXXXXXXXXXXXXXXSHEC-SEEEEEEESSSSSEEEEEE.ETTSBHHHHH.S.SEEETTEEGTTSCSGGGGTTTEEEE.-.SSSHHHHH.HHHHHHH..HHS....T....X.XTTH.H.HHH..HH..HHH..HHT..T...S-E...EE..E..T..TEEEE-S-TTTHHHHHHHHHHTTS.T.T-BSSHHHHHHHHHHHTT--HHHHHHHHH..HTT-.-TTS-B-HHHHHHHHHTTBSSTTCEEEEEEEEETTTEEE.EEEEETHHHHEEEESSSSHHHHHHEEEEECTTS....SEEEEEEEEEESSEEEEEE.EEESSC...E.....E...E..E.EE...EE..T.TSE.SEEE...EE..EC.S.T...T.SEEEEE...EEEESTTS..S..E.EE.EETT....EE.E..EES..EEEEEEEEEEEECS.EEEESS-----ETTTTEEEETTEEE----S-EEEEEEEEEEEE-XXXXX.................................................................................
#=GC seq_cons ..................................................................lhhT.Dshshpp..l.t.s.sht.ph.G.sshhpshslst.hst...tsp.hh..h..p.s..t...sh.......hh....s....h.Dpp..h.h.a...p...h............a.h.......h..s..GhhsLKpsDNNCalNushltLQhh.c.hpFp..thpptapcFpsGcsssFVphlYt..hsst.phGc.GDsptsLppLlphhp.psssthhp.pssspCG.p.ptphpGhpushh.hsshthpththGh..sCsCG....tshhtplsphpushlhss....s......s.....s...s..t.ph...hh..p.sss.hss.....a..pG.s.h...s.sGH.Yp...asthp..t.....h.h...Dut....ph.h..phs.....h.hTsshh...............t..h...................................................................................................................
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