#=GF ID   Collagen
#=GF AC   PF01391.21
#=GF DE   Collagen triple helix repeat (20 copies)
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Eddy SR;0000-0001-6676-4706
#=GF SE   Swissprot
#=GF GA   27.20 27.20;
#=GF TC   27.20 27.20;
#=GF NC   27.10 27.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Collagen_helix
#=GF RN   [1]
#=GF RM   8240831
#=GF RT   New members of the collagen superfamily 
#=GF RA   Mayne R, Brewton RG; 
#=GF RL   Curr Opin Cell Biol 1993;5:883-890.
#=GF RN   [2]
#=GF RM   11158359
#=GF RT   Streptococcus pyogenes sclB encodes a putative hypervariable
#=GF RT   surface protein with a collagen-like repetitive structure.
#=GF RA   Whatmore AM;
#=GF RL   Microbiology. 2001;147:419-429.
#=GF RN   [3]
#=GF RM   21726633
#=GF RT   Characterisation of a large family of polymorphic collagen-like
#=GF RT   proteins in the endospore-forming bacterium Pasteuria ramosa.
#=GF RA   McElroy K, Mouton L, Du Pasquier L, Qi W, Ebert D;
#=GF RL   Res Microbiol. 2011;162:701-714.
#=GF DR   INTERPRO; IPR008160;
#=GF DR   MIM; 240400;
#=GF DC   Scurvy is associated with collagens.
#=GF DR   SCOP; 1a9a; fa;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   Members of this family belong to the collagen superfamily [1].
#=GF CC   Collagens are generally extracellular structural proteins
#=GF CC   involved in formation of connective tissue structure. The
#=GF CC   alignment contains 20 copies of the G-X-Y repeat that forms a
#=GF CC   triple helix.  The first position of the repeat is glycine, the
#=GF CC   second and third positions can be any residue but are frequently
#=GF CC   proline and hydroxy-proline.  Collagens are post translationally
#=GF CC   modified by proline hydroxylase to form the hydroxy-proline
#=GF CC   residues. Defective hydroxylation is the cause of scurvy. Some
#=GF CC   members of the collagen superfamily are not involved in
#=GF CC   connective tissue structure but share the same triple helical
#=GF CC   structure. The family includes bacterial collagen-like
#=GF CC   triple-helix repeat proteins [2,3].
#=GF SQ   158865
#=GS A0A5N4E6D9_CAMDR/271-337      AC A0A5N4E6D9.1
#=GS A0A093RTT8_9PASS/833-895      AC A0A093RTT8.1
#=GS A0A5F4DHD9_CANLF/282-342      AC A0A5F4DHD9.1
#=GS COL14_CAEEL/264-333           AC P18834.2
#=GS CO4A4_MOUSE/54-113            AC Q9QZR9.1
#=GS A0A6J3G3W8_SAPAP/246-308      AC A0A6J3G3W8.1
#=GS A0A7E4VK49_PANRE/832-891      AC A0A7E4VK49.1
#=GS A0A6P3F6G8_OCTDE/278-335      AC A0A6P3F6G8.1
#=GS A0A452ID03_9SAUR/431-491      AC A0A452ID03.1
#=GS A0A671PGX9_9TELE/475-551      AC A0A671PGX9.1
#=GS A0A6P8H3U0_CLUHA/258-314      AC A0A6P8H3U0.1
#=GS A0A671RU76_9TELE/22-75        AC A0A671RU76.1
#=GS G1QSI7_NOMLE/443-500          AC G1QSI7.2
#=GS A0A183T320_SCHSO/110-161      AC A0A183T320.1
#=GS A0A3Q4GHL3_NEOBR/988-1049     AC A0A3Q4GHL3.1
#=GS A0A6J2RYN0_COTGO/2808-2866    AC A0A6J2RYN0.1
#=GS A0A6P7HZV1_9TELE/518-574      AC A0A6P7HZV1.1
#=GS A0A1S3FE03_DIPOR/258-317      AC A0A1S3FE03.1
#=GS A0A091KJL2_9GRUI/467-546      AC A0A091KJL2.1
#=GS G1TB96_RABIT/657-724          AC G1TB96.2
#=GS A0A6P7NLM3_BETSP/333-389      AC A0A6P7NLM3.1
#=GS A0A6P9BJA7_PANGU/1010-1079    AC A0A6P9BJA7.1
#=GS T1G104_HELRO/1-56             AC T1G104.1
#=GS A0A287B821_PIG/686-750        AC A0A287B821.2
#=GS A0A1L8HZW7_XENLA/322-383      AC A0A1L8HZW7.1
#=GS E7G7H1_9FIRM/1-60             AC E7G7H1.1
#=GS A0A3P4RQ47_GULGU/60-127       AC A0A3P4RQ47.1
#=GS A0A131ZWW9_SARSC/308-366      AC A0A131ZWW9.1
#=GS A0A0V0S713_9BILA/41-98        AC A0A0V0S713.1
#=GS A0A665T4A4_ECHNA/47-102       AC A0A665T4A4.1
#=GS G1RCL9_NOMLE/1060-1122        AC G1RCL9.3
#=GS CO4A5_HUMAN/283-352           AC P29400.2
#=GS A0A2Y9P9S9_DELLE/246-294      AC A0A2Y9P9S9.1
#=GS A0A0Q9WHU5_DROVI/522-582      AC A0A0Q9WHU5.1
#=GS L8HQD6_9CETA/44-105           AC L8HQD6.1
#=GS A0A6P6JNY0_CARAU/1378-1423    AC A0A6P6JNY0.1
#=GS A0A2Y9K4B3_ENHLU/725-787      AC A0A2Y9K4B3.1
#=GS A0A4U5TYS6_COLLU/528-589      AC A0A4U5TYS6.1
#=GS A0A2Y9F2W8_PHYMC/2300-2375    AC A0A2Y9F2W8.1
#=GS Q9ZXF4_BPPH1/55-117           AC Q9ZXF4.1
#=GS A0A0N9QJ10_CEV01/17-77        AC A0A0N9QJ10.1
#=GS A0A1S3FXL7_DIPOR/1303-1363    AC A0A1S3FXL7.1
#=GS A0A4W6BQQ2_LATCA/463-523      AC A0A4W6BQQ2.1
#=GS A0A1S3K3L1_LINUN/591-656      AC A0A1S3K3L1.1
#=GS A0A6J0SZA1_9SAUR/408-464      AC A0A6J0SZA1.1
#=GS A0A484BWL7_DRONA/216-274      AC A0A484BWL7.1
#=GS A0A6G1Q9Z4_9TELE/306-364      AC A0A6G1Q9Z4.1
#=GS J9NUJ2_CANLF/63-113           AC J9NUJ2.2
#=GS A0A673TGB2_SURSU/616-688      AC A0A673TGB2.1
#=GS A0A672KJ46_SINGR/422-479      AC A0A672KJ46.1
#=GS F1QYN1_DANRE/1326-1392        AC F1QYN1.3
#=GS A0A161SSL8_9MICO/403-463      AC A0A161SSL8.1
#=GS A0A6J1VFG8_9SAUR/74-121       AC A0A6J1VFG8.1
#=GS A0A2K8PGJ2_STRLA/348-419      AC A0A2K8PGJ2.1
#=GS A0A498NB91_LABRO/3978-4037    AC A0A498NB91.1
#=GS A0A5F4D857_CANLF/1122-1181    AC A0A5F4D857.1
#=GS A0A0C1U1X2_9CLOT/208-265      AC A0A0C1U1X2.1
#=GS W5JBH7_ANODA/1435-1486        AC W5JBH7.1
#=GS A0A384BAY0_BALAS/45-106       AC A0A384BAY0.1
#=GS A0A452ECL1_CAPHI/479-540      AC A0A452ECL1.1
#=GS A0A4W3GEK2_CALMI/16-75        AC A0A4W3GEK2.1
#=GS A0A5F9CPM2_RABIT/862-923      AC A0A5F9CPM2.1
#=GS A0A669BR74_ORENI/632-708      AC A0A669BR74.1
#=GS A0A7E6DJB1_9CHIR/966-1025     AC A0A7E6DJB1.1
#=GS A0A151NYN3_ALLMI/545-605      AC A0A151NYN3.1
#=GS A0A210QYC1_MIZYE/189-249      AC A0A210QYC1.1
#=GS A0A665U5N5_ECHNA/673-733      AC A0A665U5N5.1
#=GS A0A452I6M8_9SAUR/1164-1223    AC A0A452I6M8.1
#=GS A0A2K5E8P9_AOTNA/589-650      AC A0A2K5E8P9.1
#=GS A0A2B4R7Q3_STYPI/623-681      AC A0A2B4R7Q3.1
#=GS A0A5N3XH32_MUNRE/1052-1111    AC A0A5N3XH32.1
#=GS A0A1L8GHR0_XENLA/1150-1210    AC A0A1L8GHR0.1
#=GS A0A673U8K7_SURSU/371-428      AC A0A673U8K7.1
#=GS G1KZU9_AILME/499-561          AC G1KZU9.2
#=GS A0A452FMR4_CAPHI/932-997      AC A0A452FMR4.1
#=GS A0A553NGB9_9TELE/677-736      AC A0A553NGB9.1
#=GS A0A6P9DMQ4_PANGU/220-289      AC A0A6P9DMQ4.1
#=GS A0A672J8R1_SALFA/801-840      AC A0A672J8R1.1
#=GS A0A0N4YKE3_NIPBR/1-53         AC A0A0N4YKE3.1
#=GS A0A671EA03_RHIFE/199-260      AC A0A671EA03.1
#=GS A0A0P7XX83_SCLFO/109-166      AC A0A0P7XX83.1
#=GS A0A0A0A0I3_CHAVO/1291-1363    AC A0A0A0A0I3.1
#=GS A0A0B1TCQ9_OESDE/139-201      AC A0A0B1TCQ9.1
#=GS A0A091FKE6_9AVES/36-94        AC A0A091FKE6.1
#=GS A0A183DWG1_9BILA/891-957      AC A0A183DWG1.1
#=GS A0A3P9CQD3_9CICH/464-529      AC A0A3P9CQD3.1
#=GS A0A2K6BN52_MACNE/357-409      AC A0A2K6BN52.1
#=GS A0A3N0Z9Q2_ANAGA/33-104       AC A0A3N0Z9Q2.1
#=GS A0A5N5KKB7_PANHP/1026-1088    AC A0A5N5KKB7.1
#=GS A0A672T5U8_SINGR/600-668      AC A0A672T5U8.1
#=GS A0A674HIB9_TAEGU/1058-1117    AC A0A674HIB9.1
#=GS A0A195F0A5_9HYME/1547-1625    AC A0A195F0A5.1
#=GS A0A1V4JHV1_PATFA/349-416      AC A0A1V4JHV1.1
#=GS A0A2Y9D6L8_TRIMA/1974-2036    AC A0A2Y9D6L8.1
#=GS A0A091V6H3_NIPNI/233-290      AC A0A091V6H3.1
#=GS A0A2I4CEW4_9TELE/604-662      AC A0A2I4CEW4.1
#=GS CO1A1_MOUSE/285-344           AC P11087.4
#=GS A0A1S3W452_ERIEU/288-349      AC A0A1S3W452.1
#=GS G3NNJ9_GASAC/159-222          AC G3NNJ9.1
#=GS A0A6J3DR31_AYTFU/106-167      AC A0A6J3DR31.1
#=GS A0A0N4U7B8_DRAME/213-281      AC A0A0N4U7B8.1
#=GS A0A093F4F3_TYTAL/704-759      AC A0A093F4F3.1
#=GS A0A6P7Y6A0_9AMPH/744-804      AC A0A6P7Y6A0.1
#=GS A0A195DSW5_9HYME/1118-1181    AC A0A195DSW5.1
#=GS A0A2I3GRZ3_NOMLE/1090-1150    AC A0A2I3GRZ3.1
#=GS H2UF53_TAKRU/672-743          AC H2UF53.3
#=GS A0A672SUN6_SINGR/410-474      AC A0A672SUN6.1
#=GS A0A4W4H375_ELEEL/625-684      AC A0A4W4H375.1
#=GS A0A6P6QJ74_CARAU/317-382      AC A0A6P6QJ74.1
#=GS A0A3P9PM33_POERE/801-857      AC A0A3P9PM33.1
#=GS A0A091ED69_CORBR/1433-1486    AC A0A091ED69.1
#=GS K0B3M8_GOTA9/446-516          AC K0B3M8.1
#=GS A0A4Z2DJT0_SCHJA/985-1046     AC A0A4Z2DJT0.1
#=GS A0A672SWB6_SINGR/752-804      AC A0A672SWB6.1
#=GS A0A5F9CXD3_RABIT/1244-1298    AC A0A5F9CXD3.1
#=GS A0A6P4ZFQ9_BRABE/561-633      AC A0A6P4ZFQ9.1
#=GS A0A4U5VLJ3_COLLU/986-1039     AC A0A4U5VLJ3.1
#=GS A0A0D8XMT2_DICVI/221-285      AC A0A0D8XMT2.1
#=GS A0A6J1ZDV2_ACIJB/804-861      AC A0A6J1ZDV2.1
#=GS E9H7I8_DAPPU/48-108           AC E9H7I8.1
#=GS E9Q5L6_MOUSE/233-297          AC E9Q5L6.1
#=GS F1QVG7_DANRE/1072-1132        AC F1QVG7.1
#=GS V4A4G2_LOTGI/84-184           AC V4A4G2.1
#=GS A0A553NGX2_9TELE/1312-1371    AC A0A553NGX2.1
#=GS A0A668SA92_OREAU/808-872      AC A0A668SA92.1
#=GS A0A6J2WE30_CHACN/734-791      AC A0A6J2WE30.1
#=GS A0A6A4XE63_AMPAM/1327-1398    AC A0A6A4XE63.1
#=GS F2GDD7_HAEPS/614-674          AC F2GDD7.1
#=GS A0A485PBB2_LYNPA/574-632      AC A0A485PBB2.1
#=GS A0A2G8LJH9_STIJA/178-238      AC A0A2G8LJH9.1
#=GS A0A1L8GPQ2_XENLA/1767-1830    AC A0A1L8GPQ2.1
#=GS A0A6J3FZK9_SAPAP/303-366      AC A0A6J3FZK9.1
#=GS H0ZBD1_TAEGU/26-85            AC H0ZBD1.2
#=GS A0A093EGS0_9AVES/439-508      AC A0A093EGS0.1
#=GS A0A341D2Y2_NEOAA/283-342      AC A0A341D2Y2.1
#=GS T1ID48_RHOPR/456-520          AC T1ID48.1
#=GS G3WCB9_SARHA/2139-2207        AC G3WCB9.2
#=GS W2SU41_NECAM/207-276          AC W2SU41.1
#=GS A0A6I9Q2J6_9TELE/835-893      AC A0A6I9Q2J6.1
#=GS A0A4W4GBQ7_ELEEL/1059-1115    AC A0A4W4GBQ7.1
#=GS A0A672SBZ8_SINGR/552-625      AC A0A672SBZ8.1
#=GS A0A091DVA8_FUKDA/876-935      AC A0A091DVA8.1
#=GS A0A2K5DS01_AOTNA/726-791      AC A0A2K5DS01.1
#=GS K1Q335_CRAGI/63-129           AC K1Q335.1
#=GS COGA1_HUMAN/571-635           AC Q07092.2
#=GS A0A3Q3S7N0_9TELE/553-610      AC A0A3Q3S7N0.2
#=GS A0A2K6G7U5_PROCO/576-637      AC A0A2K6G7U5.1
#=GS A0A3B5Q617_XIPMA/858-926      AC A0A3B5Q617.1
#=GS A0A674P888_TAKRU/99-158       AC A0A674P888.1
#=GS A0A6J2XT87_SITOR/269-326      AC A0A6J2XT87.1
#=GS A0A673T2B9_SURSU/556-618      AC A0A673T2B9.1
#=GS A0A091P2X6_HALAL/1419-1470    AC A0A091P2X6.1
#=GS A0A669B0W5_ORENI/286-345      AC A0A669B0W5.1
#=GS A0A2K5I8P2_COLAP/1332-1396    AC A0A2K5I8P2.1
#=GS A0A0M3JVC2_ANISI/143-213      AC A0A0M3JVC2.1
#=GS A0A6J3HTL3_SAPAP/111-171      AC A0A6J3HTL3.1
#=GS K7FM73_PELSI/620-679          AC K7FM73.1
#=GS A0A5F4W4V8_CALJA/26-100       AC A0A5F4W4V8.1
#=GS A0A6I9M8R3_PERMB/1681-1743    AC A0A6I9M8R3.1
#=GS A0A672LFS2_SINGR/91-138       AC A0A672LFS2.1
#=GS A0A212ELT1_DANPL/276-338      AC A0A212ELT1.1
#=GS A0A2K6C3K6_MACNE/659-707      AC A0A2K6C3K6.1
#=GS A0A7E4S013_CIMLE/967-1040     AC A0A7E4S013.1
#=GS A0A090LRT5_STRRB/132-193      AC A0A090LRT5.1
#=GS A0A2U4CI37_TURTR/1074-1133    AC A0A2U4CI37.1
#=GS A0A212F0E5_DANPL/115-168      AC A0A212F0E5.1
#=GS A0A4W3JBN1_CALMI/235-299      AC A0A4W3JBN1.1
#=GS A0A1I6M1G5_9BACT/514-561      AC A0A1I6M1G5.1
#=GS A0A5A9NDX1_9TELE/23-73        AC A0A5A9NDX1.1
#=GS A0A6P6EWZ5_OCTDE/1264-1339    AC A0A6P6EWZ5.1
#=GS A0A2G5UTP5_9PELO/137-199      AC A0A2G5UTP5.1
#=GS A0A2K5N4H7_CERAT/655-701      AC A0A2K5N4H7.1
#=GS H3DK71_TETNG/79-143           AC H3DK71.1
#=GS A0A6P3GSC1_BISBI/1030-1094    AC A0A6P3GSC1.1
#=GS A0A3B5KGA4_TAKRU/1347-1410    AC A0A3B5KGA4.2
#=GS A8XR65_CAEBR/203-271          AC A8XR65.1
#=GS A0A671G3E6_RHIFE/712-782      AC A0A671G3E6.1
#=GS B4JAS0_DROGR/1480-1541        AC B4JAS0.1
#=GS H3AEE8_LATCH/85-149           AC H3AEE8.1
#=GS A0A6J3BCU7_VICPA/2555-2628    AC A0A6J3BCU7.1
#=GS A0A0R4II70_DANRE/390-449      AC A0A0R4II70.2
#=GS A0A6P8VKI4_GYMAC/208-262      AC A0A6P8VKI4.1
#=GS S4RMA4_PETMA/388-443          AC S4RMA4.1
#=GS A0A087RDJ3_APTFO/52-115       AC A0A087RDJ3.1
#=GS A0A401QE14_SCYTO/17-78        AC A0A401QE14.1
#=GS A0A6P8VHU9_GYMAC/1157-1222    AC A0A6P8VHU9.1
#=GS A0A6A5DYD9_PERFL/703-754      AC A0A6A5DYD9.1
#=GS A0A2R9A457_PANPA/120-179      AC A0A2R9A457.1
#=GS A0A091R0A0_9GRUI/551-611      AC A0A091R0A0.1
#=GS A0A1M5KPQ4_9GAMM/122-179      AC A0A1M5KPQ4.1
#=GS W5MZF4_LEPOC/206-265          AC W5MZF4.1
#=GS A0A183E9R4_9BILA/130-191      AC A0A183E9R4.1
#=GS A0A0T6AZP4_9SCAR/1-53         AC A0A0T6AZP4.1
#=GS A0A5F8A8G3_MACMU/836-900      AC A0A5F8A8G3.1
#=GS A0A3Q1M906_BOVIN/165-222      AC A0A3Q1M906.1
#=GS A0A6J3QS41_TURTR/752-815      AC A0A6J3QS41.1
#=GS A0A2T7NS19_POMCA/228-285      AC A0A2T7NS19.1
#=GS A0A2G9UJ24_TELCI/220-292      AC A0A2G9UJ24.1
#=GS A0A559IH05_9BACL/98-153       AC A0A559IH05.1
#=GS A0A671YPG6_SPAAU/210-266      AC A0A671YPG6.1
#=GS A0A665X8D9_ECHNA/27-92        AC A0A665X8D9.1
#=GS A0A0N7C2X2_9CAUD/338-403      AC A0A0N7C2X2.1
#=GS D6VP96_CAEEL/46-116           AC D6VP96.1
#=GS A0A6J2W593_CHACN/62-109       AC A0A6J2W593.1
#=GS A0A3B1JH63_ASTMX/981-1048     AC A0A3B1JH63.1
#=GS A0A670Y4C1_PSETE/146-200      AC A0A670Y4C1.1
#=GS A0A2U3ZRP2_ODORO/498-559      AC A0A2U3ZRP2.1
#=GS A0A803KC26_XENTR/60-112       AC A0A803KC26.1
#=GS A0A2G9V0B0_TELCI/2-61         AC A0A2G9V0B0.1
#=GS W5JBH7_ANODA/255-314          AC W5JBH7.1
#=GS A0A3Q0CZ96_MESAU/2147-2209    AC A0A3Q0CZ96.1
#=GS A0A2K6RKZ8_RHIRO/44-103       AC A0A2K6RKZ8.1
#=GS A0A3Q7S3M3_VULVU/654-715      AC A0A3Q7S3M3.1
#=GS A0A2I3ML89_PAPAN/981-1038     AC A0A2I3ML89.1
#=GS A0A6P7P4X7_BETSP/589-663      AC A0A6P7P4X7.1
#=GS A0A1Y6CWZ6_9PROT/279-337      AC A0A1Y6CWZ6.1
#=GS A0A4W5Q0D6_9TELE/534-603      AC A0A4W5Q0D6.1
#=GS A0A3Q1M651_BOVIN/304-362      AC A0A3Q1M651.1
#=GS A0A452FFW7_CAPHI/1282-1350    AC A0A452FFW7.1
#=GS A0A091UW46_PHALP/157-214      AC A0A091UW46.1
#=GS G5CQ58_9VIRU/183-243          AC G5CQ58.1
#=GS A0A6P8FWD8_CLUHA/441-502      AC A0A6P8FWD8.1
#=GS A0A6P6R392_CARAU/1458-1515    AC A0A6P6R392.1
#=GS A0A3Q7T4L0_VULVU/1680-1740    AC A0A3Q7T4L0.1
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#=GS A0A1G6HCW6_9BACI/254-311      AC A0A1G6HCW6.1
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#=GS A0A1V4KN27_PATFA/19-81        AC A0A1V4KN27.1
#=GS K7G400_PELSI/362-424          AC K7G400.1
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