#=GF ID   Collagen
#=GF AC   PF01391.22
#=GF DE   Collagen triple helix repeat (20 copies)
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF AU   Eddy SR;0000-0001-6676-4706
#=GF SE   Swissprot
#=GF GA   27.20 27.20;
#=GF TC   27.20 27.20;
#=GF NC   27.10 27.10;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 4 -Z 75585367 -E 1000 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Collagen_helix
#=GF RN   [1]
#=GF RM   8240831
#=GF RT   New members of the collagen superfamily 
#=GF RA   Mayne R, Brewton RG; 
#=GF RL   Curr Opin Cell Biol 1993;5:883-890.
#=GF RN   [2]
#=GF RM   11158359
#=GF RT   Streptococcus pyogenes sclB encodes a putative hypervariable
#=GF RT   surface protein with a collagen-like repetitive structure.
#=GF RA   Whatmore AM;
#=GF RL   Microbiology. 2001;147:419-429.
#=GF RN   [3]
#=GF RM   21726633
#=GF RT   Characterisation of a large family of polymorphic collagen-like
#=GF RT   proteins in the endospore-forming bacterium Pasteuria ramosa.
#=GF RA   McElroy K, Mouton L, Du Pasquier L, Qi W, Ebert D;
#=GF RL   Res Microbiol. 2011;162:701-714.
#=GF DR   INTERPRO; IPR008160;
#=GF DR   MIM; 240400;
#=GF DC   Scurvy is associated with collagens.
#=GF DR   SCOP; 1a9a; fa;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   Members of this family belong to the collagen superfamily [1].
#=GF CC   Collagens are generally extracellular structural proteins
#=GF CC   involved in formation of connective tissue structure. The
#=GF CC   alignment contains 20 copies of the G-X-Y repeat that forms a
#=GF CC   triple helix.  The first position of the repeat is glycine, the
#=GF CC   second and third positions can be any residue but are frequently
#=GF CC   proline and hydroxy-proline.  Collagens are post translationally
#=GF CC   modified by proline hydroxylase to form the hydroxy-proline
#=GF CC   residues. Defective hydroxylation is the cause of scurvy. Some
#=GF CC   members of the collagen superfamily are not involved in
#=GF CC   connective tissue structure but share the same triple helical
#=GF CC   structure. The family includes bacterial collagen-like
#=GF CC   triple-helix repeat proteins [2,3].
#=GF SQ   251201
#=GS A0A5N3XQ51_MUNRE/815-881      AC A0A5N3XQ51.1
#=GS A0A6P6DET9_OCTDE/1003-1066    AC A0A6P6DET9.1
#=GS A0A8V0YGH0_CHICK/1085-1154    AC A0A8V0YGH0.1
#=GS A0A834J9H1_VESGE/414-472      AC A0A834J9H1.1
#=GS A0A7K6VAL5_9PASS/187-266      AC A0A7K6VAL5.1
#=GS A0A8C6D272_MOSMO/804-853      AC A0A8C6D272.1
#=GS A0A850XXA9_AEGCA/36-109       AC A0A850XXA9.1
#=GS A0A2K5IXU8_COLAP/796-854      AC A0A2K5IXU8.1
#=GS A0A8J4N0G2_EUDMI/37-107       AC A0A8J4N0G2.1
#=GS A0A7K9ST58_9AVES/747-816      AC A0A7K9ST58.1
#=GS A0A7K9XU66_9GRUI/735-787      AC A0A7K9XU66.1
#=GS R5WUL1_9BACT/119-187          AC R5WUL1.1
#=GS A0A7L3A982_9PASE/918-981      AC A0A7L3A982.1
#=GS A0A665UWX3_ECHNA/1112-1185    AC A0A665UWX3.1
#=GS A0A851NV45_9GALL/760-817      AC A0A851NV45.1
#=GS A0A7L3FIQ2_9GRUI/1-53         AC A0A7L3FIQ2.1
#=GS A0A7K6RLI8_9GRUI/77-124       AC A0A7K6RLI8.1
#=GS S7P6B2_MYOBR/184-248          AC S7P6B2.1
#=GS A0A7K4ST90_9CHAR/274-333      AC A0A7K4ST90.1
#=GS A0A1I7VIT2_LOALO/76-138       AC A0A1I7VIT2.1
#=GS A0A7E6D039_9CHIR/283-345      AC A0A7E6D039.1
#=GS A0A8C4WC59_9SAUR/777-844      AC A0A8C4WC59.1
#=GS A0A851ARN1_SULDA/114-164      AC A0A851ARN1.1
#=GS M7BK84_CHEMY/1469-1528        AC M7BK84.1
#=GS A0A7J7T1I3_PIPKU/1295-1355    AC A0A7J7T1I3.1
#=GS A0A852EVR1_PEUTA/1110-1173    AC A0A852EVR1.1
#=GS A0A3B5QPD7_XIPMA/241-303      AC A0A3B5QPD7.1
#=GS A0A8C4MT42_EQUAS/571-629      AC A0A8C4MT42.1
#=GS A0A6P8I0K1_ACTTE/222-291      AC A0A6P8I0K1.1
#=GS A0A3Q0H9A2_ALLSI/605-673      AC A0A3Q0H9A2.1
#=GS A0A7K5QAK6_9PASE/962-1031     AC A0A7K5QAK6.1
#=GS A0A669DHT5_ORENI/278-341      AC A0A669DHT5.1
#=GS G3WSQ0_SARHA/140-198          AC G3WSQ0.2
#=GS A0A6V7XH71_9BILA/270-329      AC A0A6V7XH71.1
#=GS A0A1S3FDE2_DIPOR/1086-1148    AC A0A1S3FDE2.1
#=GS A0A444SQ30_ARMVU/678-734      AC A0A444SQ30.1
#=GS A0A6P8R084_GEOSA/856-917      AC A0A6P8R084.1
#=GS G3U9E2_LOXAF/22-82            AC G3U9E2.1
#=GS A0A151NX03_ALLMI/167-221      AC A0A151NX03.1
#=GS A0A6J3QA40_TURTR/421-489      AC A0A6J3QA40.1
#=GS A0A8C6RST6_NANGA/283-345      AC A0A8C6RST6.1
#=GS A0A6P5C0X9_BOSIN/293-365      AC A0A6P5C0X9.1
#=GS A0A3M0JMH0_HIRRU/925-990      AC A0A3M0JMH0.1
#=GS A0A7K9PDL2_9CORV/2140-2200    AC A0A7K9PDL2.1
#=GS A0A7K5X4G2_9CHAR/115-166      AC A0A7K5X4G2.1
#=GS A0A7J8JBS1_ROUAE/680-739      AC A0A7J8JBS1.1
#=GS A0A7K9BAE0_DRONO/1412-1464    AC A0A7K9BAE0.1
#=GS A0A814CHT4_9BILA/542-608      AC A0A814CHT4.1
#=GS A0A8D0C158_SALMN/659-707      AC A0A8D0C158.1
#=GS A0A2Y9EAZ2_TRIMA/378-439      AC A0A2Y9EAZ2.1
#=GS A0A452F573_CAPHI/2035-2094    AC A0A452F573.1
#=GS A0A6A4WXB7_AMPAM/1022-1100    AC A0A6A4WXB7.1
#=GS A0A7K6LI10_9CORV/1303-1367    AC A0A7K6LI10.1
#=GS A0A5N5MJK3_PANHP/703-768      AC A0A5N5MJK3.1
#=GS A0A7M7TDG1_NASVI/402-463      AC A0A7M7TDG1.1
#=GS L1I6I1_GUITC/203-262          AC L1I6I1.1
#=GS A0A7K9T8S4_9AVES/59-116       AC A0A7K9T8S4.1
#=GS A0A3P8TUT9_AMPPE/125-186      AC A0A3P8TUT9.1
#=GS A0A7N4V308_SARHA/1490-1549    AC A0A7N4V308.1
#=GS A0A8C5Z928_MARMA/555-620      AC A0A8C5Z928.1
#=GS A0A811ZXM3_NYCPR/1154-1215    AC A0A811ZXM3.1
#=GS G1RZZ2_NOMLE/89-150           AC G1RZZ2.2
#=GS A0A7L2G776_NYCGR/1077-1145    AC A0A7L2G776.1
#=GS A0A7J8BVR1_ROUAE/497-562      AC A0A7J8BVR1.1
#=GS A0A5J4NQ96_9TREM/651-713      AC A0A5J4NQ96.1
#=GS A0A5N5PSC5_PANHP/2057-2119    AC A0A5N5PSC5.1
#=GS A0A1S3LZY7_SALSA/971-1030     AC A0A1S3LZY7.1
#=GS A0A2K5N4L3_CERAT/917-976      AC A0A2K5N4L3.1
#=GS A0A852F9S2_PEUTA/155-213      AC A0A852F9S2.1
#=GS A0A0J9YC03_BRUMA/301-368      AC A0A0J9YC03.1
#=GS L7N115_MYOLU/53-115           AC L7N115.1
#=GS A0A6P8X9E2_GYMAC/879-947      AC A0A6P8X9E2.1
#=GS A0A7I9VS61_9DELT/27-82        AC A0A7I9VS61.1
#=GS A0A183T9T7_SCHSO/815-872      AC A0A183T9T7.1
#=GS A0A384BSB7_URSMA/209-274      AC A0A384BSB7.1
#=GS A0A5S6PJ96_BRUMA/1103-1183    AC A0A5S6PJ96.1
#=GS A0A0C2H5L1_9BILA/285-363      AC A0A0C2H5L1.1
#=GS A0A8C0J9C8_CHEAB/155-211      AC A0A8C0J9C8.1
#=GS A0A6A4WXX3_AMPAM/1290-1353    AC A0A6A4WXX3.1
#=GS A0A6P5BF72_BOSIN/770-831      AC A0A6P5BF72.1
#=GS A0A2I4CEW4_9TELE/456-519      AC A0A2I4CEW4.1
#=GS A0A2K6FNS4_PROCO/861-938      AC A0A2K6FNS4.1
#=GS A0A6I9Q1A3_9TELE/637-694      AC A0A6I9Q1A3.1
#=GS A0A5C5W592_9BACT/1-58         AC A0A5C5W592.1
#=GS F6ZA65_HORSE/360-419          AC F6ZA65.3
#=GS A0A7K8GV94_ORTSP/540-603      AC A0A7K8GV94.1
#=GS A0A8C5INE6_JUNHY/589-664      AC A0A8C5INE6.1
#=GS A0A8C6CVH1_MOSMO/971-1030     AC A0A8C6CVH1.1
#=GS A0A3P9A0U3_ESOLU/488-549      AC A0A3P9A0U3.1
#=GS A0A3P6QWK2_9BILA/182-237      AC A0A3P6QWK2.1
#=GS A0A673U304_SURSU/588-654      AC A0A673U304.1
#=GS A0A8I5N2X4_PAPAN/287-344      AC A0A8I5N2X4.1
#=GS A0A8J1KTJ4_XENLA/22-82        AC A0A8J1KTJ4.1
#=GS A0A7L1Y517_9AVES/1037-1099    AC A0A7L1Y517.1
#=GS A0A8D2N9R6_ZONAL/273-337      AC A0A8D2N9R6.1
#=GS A0A3B1J9G8_ASTMX/112-179      AC A0A3B1J9G8.1
#=GS A0A7K5VBE2_9CORV/545-606      AC A0A7K5VBE2.1
#=GS A0A8C8Y4U8_PANLE/1073-1135    AC A0A8C8Y4U8.1
#=GS A0A3Q0KR54_SCHMA/765-825      AC A0A3Q0KR54.1
#=GS A0A850EES4_9BACL/90-148       AC A0A850EES4.1
#=GS V9K8F4_CALMI/1166-1228        AC V9K8F4.1
#=GS M1NNA9_9VIRU/88-144           AC M1NNA9.1
#=GS A0A7K6U5B7_9AVES/683-752      AC A0A7K6U5B7.1
#=GS A0A7K7U2D6_9CHAR/1040-1099    AC A0A7K7U2D6.1
#=GS A0A8B7VV72_CASCN/903-964      AC A0A8B7VV72.1
#=GS A0A8D2FFN9_THEGE/1008-1073    AC A0A8D2FFN9.1
#=GS A0A8C6VCM0_NAJNA/87-144       AC A0A8C6VCM0.1
#=GS A0A8C6NX32_NOTFU/394-470      AC A0A8C6NX32.1
#=GS A0A851WEQ8_CORMO/313-383      AC A0A851WEQ8.1
#=GS G9K9T7_MUSPF/38-97            AC G9K9T7.1
#=GS A0A8B8IRE0_VANTA/329-390      AC A0A8B8IRE0.1
#=GS A0A7M3RMZ5_SPIER/466-529      AC A0A7M3RMZ5.1
#=GS A0A8C3CTZ6_CAIMO/1617-1674    AC A0A8C3CTZ6.1
#=GS CO1A1_MOUSE/396-468           AC P11087.4
#=GS A0A850TXB4_GRUAM/50-120       AC A0A850TXB4.1
#=GS A0A5E4A8E1_MARMO/1068-1132    AC A0A5E4A8E1.1
#=GS A0A8B7ZLX4_ACAPL/45-106       AC A0A8B7ZLX4.1
#=GS A0A1V4KYV4_PATFA/53-115       AC A0A1V4KYV4.1
#=GS A0A6A4X8H1_AMPAM/83-137       AC A0A6A4X8H1.1
#=GS A0A2K6A6M2_MANLE/411-471      AC A0A2K6A6M2.1
#=GS A0A4D9EQW9_9SAUR/164-226      AC A0A4D9EQW9.1
#=GS A0A672YJR1_9TELE/366-434      AC A0A672YJR1.1
#=GS M4A7S5_XIPMA/409-478          AC M4A7S5.1
#=GS A0A368H304_ANCCA/464-530      AC A0A368H304.1
#=GS A0A850XRH2_AEGCA/422-483      AC A0A850XRH2.1
#=GS A0A8B8IRE0_VANTA/213-265      AC A0A8B8IRE0.1
#=GS A0A7L3YJP3_FREGA/115-166      AC A0A7L3YJP3.1
#=GS A0A7K7ETX4_9SYLV/674-736      AC A0A7K7ETX4.1
#=GS A0A2B4RGJ3_STYPI/1225-1289    AC A0A2B4RGJ3.1
#=GS A0A673T565_SURSU/662-728      AC A0A673T565.1
#=GS A0A8C8S7A8_9SAUR/268-333      AC A0A8C8S7A8.1
#=GS A0A8V0ZP48_CHICK/1096-1154    AC A0A8V0ZP48.1
#=GS A0A2Y9E0K3_TRIMA/293-366      AC A0A2Y9E0K3.1
#=GS A0A8C4EAT8_DICLA/546-607      AC A0A8C4EAT8.2
#=GS A0A368F4Y9_ANCCA/171-234      AC A0A368F4Y9.1
#=GS A0A8C5UPL7_MICMU/785-849      AC A0A8C5UPL7.1
#=GS A0A7K6NG23_PEDTO/120-183      AC A0A7K6NG23.1
#=GS F6T1Y0_HORSE/909-980          AC F6T1Y0.3
#=GS A0A3P7NNR2_DIBLA/61-114       AC A0A3P7NNR2.1
#=GS A0A7L1SJ13_ARAGA/217-278      AC A0A7L1SJ13.1
#=GS A0A671T1D5_9TELE/1472-1532    AC A0A671T1D5.1
#=GS A0A556TZ85_BAGYA/905-964      AC A0A556TZ85.1
#=GS A0A8C9X331_SANLU/359-419      AC A0A8C9X331.1
#=GS A0A493TYA8_ANAPP/422-488      AC A0A493TYA8.1
#=GS U3IX04_ANAPP/21-74            AC U3IX04.2
#=GS A0A2K6T570_SAIBB/1-61         AC A0A2K6T570.1
#=GS A0A671TVI0_SPAAU/152-226      AC A0A671TVI0.1
#=GS A0A3B3HN31_ORYLA/1588-1637    AC A0A3B3HN31.1
#=GS A0A0V1HED0_9BILA/227-286      AC A0A0V1HED0.1
#=GS A0A6F9A3K8_9TELE/19-76        AC A0A6F9A3K8.1
#=GS A0A7K9PFW7_9CORV/252-312      AC A0A7K9PFW7.1
#=GS A0A8C4N293_EPTBU/421-493      AC A0A8C4N293.1
#=GS A0A5E4ATL3_MARMO/99-188       AC A0A5E4ATL3.1
#=GS A0A8B7ILX7_9AVES/1397-1454    AC A0A8B7ILX7.1
#=GS A0A8R2NL53_ACYPI/24-84        AC A0A8R2NL53.1
#=GS K9U003_CHRTP/250-308          AC K9U003.1
#=GS A0A7L0DA61_9CHAR/1252-1311    AC A0A7L0DA61.1
#=GS A0A5F8GPQ6_MONDO/244-298      AC A0A5F8GPQ6.1
#=GS A0A6I9WCI0_9HYME/241-301      AC A0A6I9WCI0.1
#=GS L9L3H8_TUPCH/542-615          AC L9L3H8.1
#=GS A0A6P7J4B0_9TELE/493-555      AC A0A6P7J4B0.1
#=GS A0A8C5ISB2_JUNHY/279-339      AC A0A8C5ISB2.1
#=GS A0A850UEX3_9CORV/99-159       AC A0A850UEX3.1
#=GS A0A4W4F8K4_ELEEL/870-954      AC A0A4W4F8K4.1
#=GS F7DXN3_HORSE/211-268          AC F7DXN3.3
#=GS A0A5F9CXD3_RABIT/222-284      AC A0A5F9CXD3.1
#=GS A0A0B1TET2_OESDE/139-214      AC A0A0B1TET2.1
#=GS A0A0B1RY70_OESDE/86-149       AC A0A0B1RY70.1
#=GS A0A8B7JNB5_9AVES/12-73        AC A0A8B7JNB5.1
#=GS H3D3T6_TETNG/514-575          AC H3D3T6.1
#=GS A0A8J6EFZ4_ELECQ/260-323      AC A0A8J6EFZ4.1
#=GS A0A3Q2WVE9_HAPBU/178-249      AC A0A3Q2WVE9.1
#=GS A0A815UYF9_9BILA/801-863      AC A0A815UYF9.1
#=GS A0A8I3WQZ2_CALJA/364-425      AC A0A8I3WQZ2.1
#=GS A0A6P4Y4G6_BRABE/133-206      AC A0A6P4Y4G6.1
#=GS T1KZ78_TETUR/874-950          AC T1KZ78.1
#=GS A0A834L0D6_ORYME/1294-1353    AC A0A834L0D6.1
#=GS A0A8D2F1I4_THEGE/488-552      AC A0A8D2F1I4.1
#=GS A0A2K5L8N6_CERAT/529-606      AC A0A2K5L8N6.1
#=GS A0A7L3PVW5_9DEND/120-183      AC A0A7L3PVW5.1
#=GS A0A6J2VA99_CHACN/624-684      AC A0A6J2VA99.1
#=GS A0A090LGQ0_STRRB/142-208      AC A0A090LGQ0.1
#=GS A0A2U3WMG8_ODORO/27-87        AC A0A2U3WMG8.1
#=GS A0A7M3RX19_SPIER/206-266      AC A0A7M3RX19.1
#=GS A0A0B1TPY1_OESDE/345-401      AC A0A0B1TPY1.1
#=GS A0A8C4HIK4_DICLA/987-1049     AC A0A8C4HIK4.2
#=GS A0A1U7UJM4_CARSF/1130-1189    AC A0A1U7UJM4.1
#=GS A0A2K6USJ6_SAIBB/63-143       AC A0A2K6USJ6.1
#=GS A0A674E8F8_SALTR/229-286      AC A0A674E8F8.1
#=GS G3V763_RAT/1518-1577          AC G3V763.4
#=GS A0A673XPC7_SALTR/146-210      AC A0A673XPC7.1
#=GS A0A8C5TFT2_9PASS/131-189      AC A0A8C5TFT2.1
#=GS A0A6P9DF65_PANGU/970-1026     AC A0A6P9DF65.1
#=GS A0A671U153_SPAAU/377-432      AC A0A671U153.1
#=GS A0A8B9W004_9AVES/1060-1119    AC A0A8B9W004.1
#=GS A0A4W5KUY5_9TELE/93-152       AC A0A4W5KUY5.1
#=GS A0A674HP60_TAEGU/259-337      AC A0A674HP60.1
#=GS A0A8C6D8W0_MOSMO/56-116       AC A0A8C6D8W0.1
#=GS A0A7K9H8E2_9AVES/1430-1500    AC A0A7K9H8E2.1
#=GS A0A7L0M3P2_9PSIT/1-59         AC A0A7L0M3P2.1
#=GS A0A6P4ZNU7_BRABE/421-479      AC A0A6P4ZNU7.1
#=GS A0A7L2PUC2_9PASS/540-600      AC A0A7L2PUC2.1
#=GS A0A452HQP5_9SAUR/80-139       AC A0A452HQP5.1
#=GS A0A4Y2DSU5_ARAVE/2-62         AC A0A4Y2DSU5.1
#=GS A0A7L2QH35_9PASS/465-527      AC A0A7L2QH35.1
#=GS A0A6P6DET9_OCTDE/1302-1362    AC A0A6P6DET9.1
#=GS A0A7N5PA62_AILME/271-331      AC A0A7N5PA62.1
#=GS A0A7K9LVR2_OCETE/37-107       AC A0A7K9LVR2.1
#=GS A0A8J0SMA1_XENTR/2162-2221    AC A0A8J0SMA1.1
#=GS A0A8J0U7X5_XENLA/50-119       AC A0A8J0U7X5.1
#=GS A0A8K1GAC9_9PASS/598-663      AC A0A8K1GAC9.1
#=GS A0A6I8TV46_AEDAE/423-481      AC A0A6I8TV46.1
#=GS A0A7K5AXE8_9FURN/1-64         AC A0A7K5AXE8.1
#=GS A0A8P4JYG9_DICLA/38-99        AC A0A8P4JYG9.1
#=GS A0A7K9RKV6_9PASS/207-270      AC A0A7K9RKV6.1
#=GS A0A3Q1EEQ2_9TELE/399-464      AC A0A3Q1EEQ2.1
#=GS A0A8C8AGB7_9STRI/340-412      AC A0A8C8AGB7.1
#=GS A0A1V4KKA8_PATFA/174-236      AC A0A1V4KKA8.1
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