GenomeNet

Database: Pfam
Entry: DUF865
LinkDB: DUF865
Original site: DUF865 
#=GF ID   DUF865
#=GF AC   PF05906.17
#=GF DE   Herpesvirus-7 repeat of unknown function (DUF865)
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_9911 (release 8.0)
#=GF GA   27.00 27.00;
#=GF TC   29.90 87.20;
#=GF NC   25.40 18.80;
#=GF BM   hmmbuild  HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 90746521 -E 1000 --cpu 8 HMM pfamseq
#=GF TP   Repeat
#=GF WK   Domain_of_unknown_function
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This family consists of a series of 12 repeats of 35 amino acids
#=GF CC   in length which are found exclusively in Herpesvirus-7. The
#=GF CC   function of this family is unknown.
#=GF SQ   12
#=GS Q69517_HHV7J/281-315  AC Q69517.1
#=GS Q69517_HHV7J/1-35     AC Q69517.1
#=GS Q69517_HHV7J/351-385  AC Q69517.1
#=GS Q69517_HHV7J/386-420  AC Q69517.1
#=GS Q69517_HHV7J/316-350  AC Q69517.1
#=GS Q69517_HHV7J/106-140  AC Q69517.1
#=GS Q69517_HHV7J/211-245  AC Q69517.1
#=GS Q69517_HHV7J/71-105   AC Q69517.1
#=GS Q69517_HHV7J/176-210  AC Q69517.1
#=GS Q69517_HHV7J/141-175  AC Q69517.1
#=GS Q69517_HHV7J/246-280  AC Q69517.1
#=GS Q69517_HHV7J/36-70    AC Q69517.1
Q69517_HHV7J/281-315             MGSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/1-35                MSSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/351-385             MGSHPFRQERPRPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/386-420             MGSHPFRQETPRPHNPLTFKPVKTTGTAVDFSAGF
Q69517_HHV7J/316-350             MGSHPFRQERPEPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/106-140             MGSHPFRQERPQPHNPLTFKPVKTTGTAVVFSAGF
Q69517_HHV7J/211-245             MGSHPFRQERPQPHNPLTFKPVKTTGTAVVFSAGF
Q69517_HHV7J/71-105              MSSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/176-210             MSSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/141-175             MSSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/246-280             MSSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
Q69517_HHV7J/36-70               MGSHPFRQERPQPHNPLTFKPVKTTGTAVVFSAGF
#=GC seq_cons                    MuSHPFRQERPQPHNPLTFKPVKTTGTAVAFSAGF
//
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