GenomeNet

Database: Pfam
Entry: EIAV_GP90
LinkDB: EIAV_GP90
Original site: EIAV_GP90 
#=GF ID   EIAV_GP90
#=GF AC   PF00971.21
#=GF DE   EIAV coat protein, gp90
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_210 (release 3.0)
#=GF GA   21.00 21.00;
#=GF TC   22.20 21.80;
#=GF NC   20.90 19.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   1649329
#=GF RT   Characterization of variable regions in the envelope and S3 open
#=GF RT   reading frame of equine infectious anemia virus. 
#=GF RA   Alexandersen S, Carpenter S; 
#=GF RL   J Virol 1991;65:4255-4262.
#=GF DR   INTERPRO; IPR001361;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   Equine infectious anaemia (EIAV). EIAV belongs to the family
#=GF CC   Retroviridae. EIAV gp90 is hypervariable in the carboxyl-end
#=GF CC   region and more stable in the amino-end region.  This
#=GF CC   variability is a pathogenicity factor that allows the evasion of
#=GF CC   the host's immune response.
#=GF SQ   2
#=GS A0A2K9V360_9CAUD/51-120  AC A0A2K9V360.1
#=GS A0A444DTV5_ENSVE/52-145  AC A0A444DTV5.1
A0A2K9V360_9CAUD/51-120             qenekqlkedeavr-----------KVHELELDQEKAEKARKLDWAKIGMKALTFAGTIGMTVYWS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-------------------------------iceaggvtqlsraig
A0A444DTV5_ENSVE/52-145             ......lqanicri-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AVALSCVYLLL-CVVSRILIGVLMLETEKLTAVFFIELNSEQFECSIQFLGVFGRDVTEKKRKDSKRRQRSkaiIIMFVCSTN----------------------kcfg...........
#=GC seq_cons                       ......Lpts.shh....................................................................................................................................................................................................................................................................................................................................................................................................hC.u...........
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