GenomeNet

Database: Pfam
Entry: GP120
LinkDB: GP120
Original site: GP120 
#=GF ID   GP120
#=GF AC   PF00516.21
#=GF DE   Envelope glycoprotein GP120
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF SE   Pfam-B_44 (release 1.0)
#=GF GA   27.00 27.00;
#=GF TC   283.10 129.70;
#=GF NC   18.40 17.70;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   Envelope_glycoprotein_GP120
#=GF RN   [1]
#=GF RM   9641677
#=GF RT   Structure of an HIV gp120 envelope glycoprotein in complex with
#=GF RT   the CD4 receptor and a neutralizing human antibody. 
#=GF RA   Kwong PD, Wyatt R, Robinson J, Sweet RW, Sodroski J, Hendrickson
#=GF RA   WA; 
#=GF RL   Nature 1998;393:648-659.
#=GF DR   INTERPRO; IPR000777;
#=GF DR   SCOP; 1gc1; fa;
#=GF DR   HOMSTRAD; GP120;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The entry of HIV requires interaction of viral GP120 with
#=GF CC   Swiss:P01730 and a chemokine receptor on the cell surface.
#=GF SQ   51
#=GS A8E122_9HIV1/33-150    AC A8E122.1
#=GS ENV_HV1ET/33-149       AC Q75008.1
#=GS C7TQ79_9HIV1/32-509    AC C7TQ79.1
#=GS A8E122_9HIV1/136-511   AC A8E122.1
#=GS ENV_HV1YB/23-138       AC Q9IDV2.1
#=GS ENV_HV192/132-504      AC O12164.1
#=GS ENV_HV1AN/139-513      AC Q77377.1
#=GS Q9Q6V8_9HIV1/138-495   AC Q9Q6V8.1
#=GS ENV_HV193/33-501       AC O89292.1
#=GS ENV_SIVCZ/33-150       AC P17281.1
#=GS ENV_HV190/30-145       AC O70902.1
#=GS ENV_HV1EL/33-508       AC P04581.1
#=GS ENV_SIVMB/37-527       AC Q1A261.1
#=GS C7TQ97_9HIV1/143-506   AC C7TQ97.1
#=GS Q9YX49_9HIV1/131-509   AC Q9YX49.1
#=GS ENV_HV2UC/26-514       AC Q76638.1
#=GS ENV_HV1B1/34-511       AC P03375.1
#=GS ENV_HV1H2/34-511       AC P04578.2
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL A; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3J70 U; 34-500;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO G; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3J70 D; 34-500;
#=GS ENV_HV1H2/34-511       DR PDB; 1RZJ G; 195-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN F; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO H; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3TYG A; 60-185;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO D; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 4JPJ C; 57-172;
#=GS ENV_HV1H2/34-511       DR PDB; 2NY7 G; 83-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN C; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 4JPJ B; 57-172;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL I; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN A; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL E; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 6NPR R; 1-10;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN H; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3J70 P; 34-500;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL C; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO I; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN I; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3IDY A; 83-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN E; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 5IVX P; 1-10;
#=GS ENV_HV1H2/34-511       DR PDB; 1GC1 G; 90-492;
#=GS ENV_HV1H2/34-511       DR PDB; 1G9M G; 83-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO E; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL H; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3IDX G; 83-492;
#=GS ENV_HV1H2/34-511       DR PDB; 6NPR P; 1-10;
#=GS ENV_HV1H2/34-511       DR PDB; 4JPJ D; 57-172;
#=GS ENV_HV1H2/34-511       DR PDB; 6B9K A; 1-10;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO A; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO F; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL B; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3IDY G; 83-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO B; 198-396;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN G; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL G; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN D; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL D; 90-124;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNO C; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 4JPJ A; 57-170;
#=GS ENV_HV1H2/34-511       DR PDB; 4JPK A; 57-169;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNL F; 410-492;
#=GS ENV_HV1H2/34-511       DR PDB; 3DNN B; 198-396;
#=GS Q87113_SIVSA/21-527    AC Q87113.1
#=GS ENV_HV1YF/25-142       AC O91086.1
#=GS Q8AII4_SIV/18-534      AC Q8AII4.1
#=GS ENV_SIVEK/27-139       AC Q1A243.1
#=GS B3CKG3_SIV/20-536      AC B3CKG3.1
#=GS ENV_HV1RH/33-519       AC P04579.1
#=GS P89909_SIVTA/26-533    AC P89909.2
#=GS Q72502_9HIV1/34-509    AC Q72502.1
#=GS ENV_HV1BR/34-516       AC P03377.1
#=GS ENV_HV1BR/34-516       DR PDB; 1U6U A; 312-328;
#=GS ENV_HV1BR/34-516       DR PDB; 5WEU P; 1-10;
#=GS ENV_HV1BR/34-516       DR PDB; 1U6V A; 312-328;
#=GS ENV_HV1Y2/33-498       AC P35961.1
#=GS ENV_HV1Y2/33-498       DR PDB; 1YYL P; 1083-1492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4JO3 P; 321-329;
#=GS ENV_HV1Y2/33-498       DR PDB; 2I5Y P; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A7X E; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4JZZ A; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 2QAD E; 90-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4R4F A; 45-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 2I5Y G; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4RQS G; 86-491;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A7X A; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4KA2 A; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 1YYL G; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3TGQ A; 45-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 1YYM P; 1083-1492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4LAJ F; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3HI1 J; 90-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A8H A; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3TGQ C; 45-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4JZW A; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 2I60 G; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4RWY A; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 2QAD A; 90-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4JZW G; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4K0A A; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4LAJ B; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 1G9N G; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3TGQ D; 45-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4LAJ J; 44-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 1RZK G; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3HI1 G; 90-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A7X I; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4JO3 Q; 321-329;
#=GS ENV_HV1Y2/33-498       DR PDB; 2I60 P; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A8H M; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 5A8H G; 86-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 3TGQ B; 45-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 1YYM G; 83-492;
#=GS ENV_HV1Y2/33-498       DR PDB; 4LAJ A; 44-492;
#=GS ENV_HV1MA/33-513       AC P04583.1
#=GS ENV_HV1MA/33-513       DR PDB; 2X4O C; 1-9;
#=GS ENV_SIVEK/127-481      AC Q1A243.1
#=GS ENV_HV1YB/130-481      AC Q9IDV2.1
#=GS ENV_HV1ET/140-500      AC Q75008.1
#=GS ENV_SIVCZ/143-500      AC P17281.1
#=GS ENV_HV1YF/127-488      AC O91086.1
#=GS B7UES4_SIV/21-533      AC B7UES4.1
#=GS ENV_HV190/136-500      AC O70902.1
#=GS A0A1B4WRK4_SIV/24-543  AC A0A1B4WRK4.1
#=GS ENV_HV1A2/33-509       AC P03378.1
#=GS ENV_HV2RO/21-511       AC P04577.1
#=GS Q9Q6V8_9HIV1/30-144    AC Q9Q6V8.1
#=GS C7TQ97_9HIV1/33-147    AC C7TQ97.1
#=GS ENV_HV1MV/35-523       AC Q79670.1
#=GS Q9YX49_9HIV1/33-144    AC Q9YX49.1
#=GS C7TQ73_9HIV1/31-510    AC C7TQ73.1
#=GS ENV_HV1B9/33-508       AC Q73372.2
#=GS ENV_HV1B9/33-508       DR PDB; 4R4H A; 47-488;
#=GS W8E999_9PLVG/34-520    AC W8E999.1
#=GS ENV_HV1AN/34-142       AC Q77377.1
#=GS ENV_SIVSP/24-535       AC P19503.1
#=GS ENV_SIVTN/23-502       AC Q8AIH5.1
#=GS ENV_HV192/33-146       AC O12164.1
#=GS ENV_HV2BE/24-510       AC P18094.1
A8E122_9HIV1/33-150               ............LWVTVYYGVSVWREADTTLFCAsdakaheTEAHNVWATHACVP..TDPN...PQEILLdNVTENF.N..MW..R..NN..MAEQMHEDIISLWDESLKPCVRLTPFCVTLNCTD.VNTT....RI.HDSTNTSIHT----...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------te...........
ENV_HV1ET/33-149                  ............LWVTVYYGVPVWKDASPTLFCAsdakaydTEVHNVWGTFACVP..TDPS...PQELGLeNVTENF.N..MW..K..ND..MVEQMHQDIISLWDQGLKPCVKLTPLCVTLNCNA.IKNN....TK.VTNNSINS------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------and..........
C7TQ79_9HIV1/32-509               ............LWVTVYYGVPVWRDAETTLFCAsdakayeTEIHNVWATHACVP..TDPD...PQEMALpNVTENF.N..MW..K..NN..MVEQMHTDIISLWDQGLKPCVKLTPLCVTLNCTN.VN-I....TN.I-------------...--N..NTN-INNQT---V..NNQTI..GDATQDMKNCSFNMT.TILTDkKEKVQALFYK.....LDI...VPIN........GngsD..S.....NN...S..E..Y...rLINCNTSTIAQACPKITFEPIPIHYCAPAGFAILKCRDKNFNGTGP-CKNVSSVQCTHGIKPVVSTQLLLNGSLAEEEVKIRS..E..NF.......tDN.tKN...II.vQFAK--SVQINCTRPGNNTR.KSIRIGPGq..aFYAT..G...E..V...TG-..DIRQAHCNIStQDWNNTLHLVVVQLE..........K..........H....-..----........-YPN.............KTIVF.-.KQPSGGDLEVTMHSFNCRGEFFYCNTSSLFN............S....T-Y....L.N..IT.KGNit..................mlPCRIKQIVNMWQGVGRAIYAPPIAG...KIQCVSNITGLILTRDG..GN..E.D.NNTET...-FrpgGGNMKDNWRSELYKYKVVKIEPLGIAPTKAKR...--R.V.VEREKR.............
A8E122_9HIV1/136-511              .trihdstntsi----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..-HTTEELKNCSFNVTtAIKDK.KQKLQALFES.....LDV...VPMN........K...S..S.....-N...T..-..Y...rLINCNTSVIKQACPKTSFEPIPIHFCAPAGFAILKCNNKKFNGTGP-CTNVSSVQCTHGIRPVVSTHLLLNGSLAEEEIIIKS..E..NL.......tDN.tKT...II.vHLNE--SVKINCTRPFNNTR.KSVSLGPG....SVWYrpG...E..V...IGD..-IRQAYCNINrKEWNGTLYKVVAQLG..........R..........H....-..----........LNNM.............STINF.Q.PPPSGGDIEITTHTFNCGGEFFYCDTKELFNstwnk..stngtW....TKN....S.T..TG.--Etgnt.............anitlQCRIKQIVNMWQRTGQAIYAPPIRG...IIQCESNITGILLTRDR..HN..H.T.NETFR...PG...GGNMKDNWRNELYKYKVVEIEPLGIAPTRAKR...--R.V.VEREKR.............
ENV_HV1YB/23-138                  ...........h-WVTVYYGVPVWRDAETVLFCAsdakahsTEAHNIWATQACVP..TDPN...PQEVLLtNVTEYF.N..MW..E..NK..MAEQMQEDIISLWEQSLKPCVKLTPLCVTMLCNN.SNGN....SA.G-NST---------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------tnrted.......
ENV_HV192/132-504                 .....nrtidyn----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..--NRT..DNMGGEIKNCSFNMTtEVRDK.REKVHALFYR.....LDI...VPLK........N...E..S.....SN...T..SgdY...rLINCNTSAITQACPKVSFDPIPIHYCAPAGYAILKCNNKTFNGTGP-CNNVSTIQCTHGTKPVVSTQLLLNGSLAEEEIIIRS..K..NL.......tDN.vKT...II.vHLNE--SVEINCTRPNNNTR.KSIRIGPGq..aFYAT..G...E..I...IGD..-IRQAHCNISrTAWNKTLQEVGKKLA..........E..........H....-..----........-FPN.............KAIKF.A.K-HSGGDLEITTHSFNCRGEFFYCNTSSLFNsty......tpnS....TEN....I.T..GT.ENSii..................tiPCRIKQIINMWQGVGRAMYAPPIEG...ILTCRSNITGLLLTRDG..GT..G.M.HDTEI...-FrpeGGDMRDNWRSELYKYKVVEIKPLGIAPTKAKR...--R.V.VEREKR.............
ENV_HV1AN/139-513                 ........nenl----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..------MKKCEFNVTtVIKDK.KEKKQALFYVsdlmeLNE...TSST........N...K..T.....NS...K..M..Y...tLTNCNSTTITQACPKVSFEPIPIHYCAPAGYAIFKCNSTEFNGTGT-CRNITVVTCTHGIRPTVSTQLILNGTLSKGKIRMMA..K..DIl......eGG..KN...II.vTLNS--TLNMTCERPQIDIQeMRIGPMAWy..sMGIG..G...T..A...GNS..-SRAAYCKYNaTDWGKILKQTAERYL..........E..........L....-..----........VNNT.............GSINM.TfNHSSGGDLEVTHLHFNCHGEFFYCNTAKMFN............Y....TFS....C.N..GT.TCSvsnvsq..........gnngtlPCKLRQVVRSWIRGQSGLYAPPIKG...NLTCMSNITGMILQMDN..TW..N.S.SNNNV...TFrpiGGDMKDIWRTELFNYKVVRVKPFSVAPTRIARp.vIST.R.THREKR.............
Q9Q6V8_9HIV1/138-495              ........ntss----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..-IKMMEMKNCSFNITtDLRDK.VKKEYALFYK.....LDV...VQID........N...D..S.....--...-..-..Y...rLISCNTSVVTQACPKISFEPIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIKPVVSTQLLLNGSLAEEEVVIRS..V..NF.......tDN.tKT...II.vQLKE--PVEINCTRPNNNTR.KGIHIGPGr..aFYAT..G...D..I...TGD..-IRQAHCNISiTKWNNTLKQIVIKLR..........K..........Q....-..----........FG-N.............KTIVF.-.NQSSGGDPEIVMHSFNCGGEFFYCNTTKLFNs..........tWn..gTEE....L.N..NT.EGDiv..................tlPCRIKQIINMWQEVGKARYAPPIAG...QIRCSSNITGLLLTRDG..GN..Q.S.NVTEI...-FrtgGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKR...--R.V.VQREKR.............
ENV_HV193/33-501                  ............LWVTVYYGVPVWKEATTTLFCAsdaksyeKEAHNVWATHACVP..TDPN...PQEVVLeNVTERF.N..MW..E..NN..MVEQMHTDIISLWDQSLKPCVKLTPLCVTLDCRN.IATN....GT.N-------------...---..DTIAINDTL----..-----..KEDPEAIQNCSFNTTtEIRDK.QLKVHALFYK.....LDI...VQIN........K...D..D.....NR...T..Y..R....LINCDASTITQACPKVSWDPIPIHYCAPAGYAILKCNEKNFTGTGS-CKNVSTVQCTHGIKPVVSTQLLLNGSLAEGEIVIRS..Q..NI.......sDN.aKT...II.vHLNE--SVQINCTRPNNNTR.KRISLGPGr..vFYTT..G...E..I...IGD..-IRKAHCNVSgTQWRNTLAKVKAKLG..........S..........Y....-..----........-FPN.............ATIKF.-.NSSSGGDLEITRHNFNCMGEFFYCNTDELFNd.........tkF...nDTG....F.N..GT.ITL......................PCRIKQIVNMWQEVGRAMYANPIAG...NITCNSNITGLLLTRDG..GL..N.S.TNE--...TFrpgGGNMKDNWRSELYKYKVVEIEPLGVAPTKAKR...--Q.V.VKRERR.............
ENV_SIVCZ/33-150                  ............LWVTVYYGVPVWHDADPVLFCAsdakahsTEAHNIWATQACVP..TDPS...PQEVFLpNVIESF.N..MW..K..NN..MVDQMHEDIISLWDQSLKPCVKLTPLCVTLQCSK.ANFS....Q-.--------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------aknltnqtssppl
ENV_HV190/30-145                  ............LWVTVYYGVPVWKEAKTTLFCAsdakayeTEKHNVWATHACVP..TDPN...PQEMVMeNVTESF.N..MW..E..NN..MVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTN.VRNN....TS.NS------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------tssmeagg.....
ENV_HV1EL/33-508                  ............LWVTVYYGVPVWKEATTTLFCAsdaksyeTEAHNIWATHACVP..TDPN...PQEIALeNVTENF.N..MW..K..NN..MVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCSDeLRNN....GT.MGNN----------...---..--VTTEEKG----..-----..------MKNCSFNVTtVLKDK.KQQVYALFYR.....LDI...VPID........N...DssT.....NS...T..N..Y...rLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCRDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVIIRS..E..NL.......tNN.aKN...II.aHLNE--SVKITCARPYQNTR.QRTPIGLG....QSLY..T...T..R...SRS..IIGQAHCNISrAQWSKTLQQVARKLG..........T..........L....-..----........-LNK.............TIIKF.-.KPSSGGDPEITTHSFNCGGEFFYCNTSGLFNstw.....nisaWn.niTES....N.N..ST.NTNi...................tlQCRIKQIIKMVA-GRKAIYAPPIER...NILCSSNITGLLLTRDG..GI..N.N.STNE-...TFrpgGGDMRDNWRSELYKYKVVQIEPLGVAPTRAKR...--R.V.VEREKR.............
ENV_SIVMB/37-527                  ............MWVTVYYGVPVWREADTTLFCAsdakaqnPEVHNVWASQACVS..TNPN...PEEIELtNVTEYF.N..AW..E..NN..MVEQMHEDIVNLWDQSVKPCVKLIPLCVTLNCSL.FKCI....KE.NGNTTNCTVQISTG...NDS..TANNI--------..-----..TVGTIDMYNCSFNATtELRDR.KKQVYSLFYR.....QDL...EPLE........G...N..KppegdKN...A..L..Y...rLYNCNTTAMTQACSKVSLEPIPIHYCAPAGFALLKCNDKNFTGIGQ-CKNVSTVHCTHGIRPVVSTQFLLNGTLEEKVTVLDR..N..VS.......nDM..DT...II.vKLNE--TVRLNCTRTGNNTI.KGIPIGPS....QIFY..GietV..I...GD-..-TRQAFCQLNkTVWTNTFKKVRHALN..........E..........T....-..-YKG........YLGN.............ETITF.-.GPSTGGDLEVTNLHLICGGEFFYCNTSILFNts........iiF....NET....K.D..DN.ITI......................PCRIRQIVRLWQRVGRGIFLPPIRG...TINCISNITGILFAQQK..TD..R.M.NKSAM...-FtpvGGEMRNNWRSELYKYKVVRIEPLGVAPTKAKR...--R.T.VHREKR.............
C7TQ97_9HIV1/143-506              ........tdin----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..----REMRNCSFNMTtVLRDK.QEKVHALFYR.....LDI...VLMN.......gN...D..Sk...nSS...G..E..Y...rLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCRDKDFNGTGL-CTNVSTVQCTHGIKPVVSTQLLLNGSLAEGGVKVRS..E..NF.......tNN.aKN...II.vQFDK--AVVINCSRPNNNTR.KSIHLGPGq..sFYAT..G...D..I...IGD..-IRQAACNISrKDWDKALSKVAKQLS..........D..........H....-..----........-FPN.............KSIAF.-.NQSSGGDLEITMHSFNCRGEFFYCNTSGLFNrtw.....kdgnW....TTQ....E.N..GT.NENi...................tlPCRIKQIVRMWQEVGQAMYAPPVAG...MIQCISNITGLILTRDG..GK..D.K.NDTEI...-FrpgGGNMKDNWRSELYKYKVVQIEPLGLAPTKARR...--R.V.VEREKR.............
Q9YX49_9HIV1/131-509              .......inatt----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..------------T..NSTNG..TVIKEGIKNCSFDITtEIRDK.KKKEYALFYR.....IDI...VPINarvpingsN...R..N....nST...E..E..Y...mLINCNASTIKQACPKVSFEPIPIHYCAPAGFAILKCNEKNFTGLGP-CTNVSSVRCTHGIKPVVSTQLLLNGSLATEEVVIRS..K..NI.......tDN.tKN...II.vQLAK--AVKINCTRPGNNTR.KSVHIGPG....LTWYatG...E..I...IGD..-IRQAHCNISgNDWNDTLKVISEELK..........R..........L....-..----........-FPN.............KTIKF.-.APPVGGDLEITTHSFNCKGEFFYCNTTPLFNsthmq.ngtnitS....TDS....T.N..ST.ITL......................QCRLKQFVRMWQEVGQAMYASPIAG...SINCSSDITGIILTRDG..GT..N.N.TEI--...-FrpgGGDMRDNWRSELYKYKVVKIEPIGVAPNKARR...--R.V.VQREK-.............
ENV_HV2UC/26-514                  ...........n-YVTVFYGIPAWRNATVPLFCA.......TTNRDTWGTVQCLP..DNGD...YTEISV.NITEAF.D..AW..N..NT..VTEQAVDDVWSLFETSIKPCVKLTPLCVAMRCNN.TGTN....TT.T-KPITTPITTTKP...---..SENLLNDTSPCIK..NDTCP..GIGLENTVDCYFNMT.GLRRD.EKKQYKDTWY.....EKD...LECN.......gN...S..T.....ST...I..C..Y....MRTCNTSVIQESCDKHYWDSLRFRYCAPPGYALLRCNDTNYSGFMPKCSKVVVSSCTRMMETQTSTWFGFNGTRTENRTYMYW..H..SK........DN..RT...II..SLNKYYNLTMHCRRPGNKTV.IPITIMSG....LNFH..S...Q..P...LNT..RPRQAWCWFK.GNWIEAIREVKETII..........K..........H....P..RYKG........TNNT.............ERIRL.V.GPSAGSDPEVRHMWTNCRGEFFYCNMTWFLN............W....VEN....R.T..GT.TQKn...................yvTCHIKQIVNTWHKVGKYVYLPPREG...TLSCNSSVTSLIANIDVyyDG..N.D.TKTNI...TM...SAEVGELYRLELGDYKLVEITPIGFAPTEIKR...YSS.T.TPRNKR.............
ENV_HV1B1/34-511                  ............LWVTVYYGVPVWKEATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVVLvNVTENF.N..MW..K..ND..MVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTD.LKND....TN.T-------------...NSS..SGRMIMEKG----..-----..-----EIKNCSFNIStSIRGK.VQKEYAFFYK.....LDI...IPID........N...D..T.....--...T..S..Y...tLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRS..A..NF.......tDN.aKT...II.vQLNQ--SVEINCTRPNNNTR.KSIRIQRGpgraFVTI..G...K..I...GNM..--RQAHCNISrAKWNNTLKQIDSKLR..........E..........Q....-..----........FGNN.............KTIIF.-.KQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNstw.....fnstW...sTKG....S.N..NT.EGSdt.................itlPCRIKQIINMWQEVGKAMYAPPISG...QIRCSSNITGLLLTRDG..GN..S.N.NESEI...-FrpgGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR...--R.V.VQREKR.............
ENV_HV1H2/34-511                  ............LWVTVYYGVPVWKEATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVVLvNVTENF.N..MW..K..ND..MVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTD.LKND....TN.T-------------...NSS..SGRMIMEKG----..-----..-----EIKNCSFNIStSIRGK.VQKEYAFFYK.....LDI...IPID........N...D..T.....--...T..S..Y...kLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRS..V..NF.......tDN.aKT...II.vQLNT--SVEINCTRPNNNTR.KRIRIQRGpgraFVTI..G...K..I...GNM..--RQAHCNISrAKWNNTLKQIASKLR..........E..........Q....-..----........FGNN.............KTIIF.-.KQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNstw.....fnstW...sTEG....S.N..NT.EGSdt.................itlPCRIKQIINMWQKVGKAMYAPPISG...QIRCSSNITGLLLTRDG..GN..S.N.NESEI...-FrpgGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR...--R.V.VQREKR.............
#=GR ENV_HV1H2/34-511       SS    ............SSXXXXEEEXXEEEXXXXXEEEXXXXTTXXXHHHHHHHHSXBX..XXSS...XXXEEESSEEEEE.E..TS..S..TS..SHHHHHHHHHHHHHHHSXXSEEEEEBSSSEEEEE.XTTX....XE.E-------------...EEE..ETTTTEEEE----..-----..-----EEEXSSSXXXSSEEEE.EEEEEXTTSX.....EEE...EEEX........X...S..S.....--...X..X..X...TTXSXBEEEEEEE--SEEEEE--BEEB--SSEEEEEE--TT--SSEE-ESSEEEESB---BSSSEBSSEEESS---SSS-EEEE..S..-S.......SST.TS-...EE.EEEEE--EEEEEEEXXBSXSS.SXBXXTTTTTBTTBXX..X...X..X...SXT..--TEEEEEEEHHHHHHHHHHHHHHHH..........H..........T....-..----........STST.............SEEEE.-.-----CSHHHHTEEEEETTEEEEEETTTTS-EEE.....SSHHH...HHHH....H.H..HH.HHXSE.................EEEEEEEESEEEGSSSSEEEEEEXXTBS...TBEEEEEEEEEEEEEES..ST..T.T.SSEEE...-EEESXSSTHHHHHHHHTTEEEEEEXSXEEEXXXXXX...--X.X.XXXXXX.............
Q87113_SIVSA/21-527               ............QYVTVFYGIPVWKNSSVQAFCK.......TPNTNLWASTNCIP..DDEPegtIAEVPIpNITEKF.D..AW..K..NRnpLVGQAESNIHLLFESTLKPCVKLSPMCIKMNCYR.LEGG....AA.T--TTSPSTSTARP...EVV..SVG--FNDS-VIE..QE---..-MEKEQAMNCSFAMA.GYRRD.VKKNYSTVWD.....DQE...VVCEegr..eksN...A..T....hTV...G..C..Y....MIHCNTSVIKEACDKTYWDTFRLRYCAPAGYALLRCADTDYSGHKA-CRNVTVSACTRLINTTVSTGIGINGSYVANRTEI-W..QknGN........SN.dSV...II..RLNRYFNLTIRCRRPGNKTV.LPVTIMAG....LVFH..S...Q..K...YNT..RLKQAWCWFG.GNWRGAWKEVKETIV..........R..........L....PpkKYSG........TNDT.............NKIFL.-.-QRQWGDPESEFFFFNCQGEFFYCKMDWFLNylnn....ksvdP....--D....H.N..NC.AKNntkpc...........wqrtyvPCHIRQVVNDWYTLSKKTYAPPREG...HLECNSTATALYVELNY..-N..S.K.NRTNV...TL...SPQIESIWANELGDYKLVEIKPIGFAPTKVRR...YT-.G.PERQKR.............
ENV_HV1YF/25-142                  ...........h-WVTVYYGVPVWREAETTLFCAsdakahsTEAHNIWATQACVP..TDPN...PQEVLLpNVTEKF.N..MW..E..NK..MADQMQEDIISLWEQSLKPCVKLTPLCVTMLCND.SYGE....ER.N-------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------ntnmttrepdi..
Q8AII4_SIV/18-534                 ............QWVTVYYGTPKWHKAETHLFCA.......TENDSLWVTTSCVP..SLLH...YEEQPIpNITWNF.TgpME..E..NE..VVMQAWGAISSMIDAVLKPCVKLTPYCVKMQCTK.GK-D....LA.TPIPTTSTTTTTTT...TKT..---VANTTELDID..TNNTE..T-TTQQNRVCKFNTT.GLCRD.CKLEIEENFR.....YED...VTCT........N...G..T.....NN...TysC..Y....MTQCNTSVITQDCNKASTDEIKFRLCAPPGYVLLRCLERL--NVSKKCTNITAVQCTQPLPATTSTMCGSSGTKHDYNELIQT..N..TKkgk.eefhDH..KY...VY..RVDEKYNLQVVCRRKGNRSV.ISTPSATG....LIFY..S...G..L...EPG.kNLKKGMCQLK.GQWGIAMHDLAIELR..........KidssiwrnvtK....G..YCKG........LKRKenrt.....gcalKTIKV.S.DYTTKGEPGAETIMLLCGGEYFFCNWTKIWR............T....WND....Q.N..SS.VWYp...................wmSCNIRQIIDDWHKVGKKIYMPPVSGfnnEIRCSNDVTEMFFEVQ-..-K..T.E.EGYII...KFv.pQDEVQNRFTAVGAHYQLVKVDPIGFAPTEVAR...YHL.P.EARQKR.............
ENV_SIVEK/27-139                  ............LWVTVYYGVPVWRDAETVLFCAsdakahsTEAHNIWATQACVP..TDPN...PQEVLIpNVTERF.D..MW..K..NN..MVDQMQEDIISLWEQSLKPCVKLTPLCVTLSCSS.WRSV....NN.SV------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------nqtnh........
B3CKG3_SIV/20-536                 ............QYITVYYGVPQWEEAKDFMLCA.......TENRSLWVTTHCLP..HIEE...ITEQYMeGIKENF.TkkVE..E..NE..VVQQAWTGVTSMIDTLLKPCVKINPYCVKMSCTL.GDEK....SNyTEDIELTTVKTTTP...VTP..PQNTTPSM--DVE..NNSTS..LNLTDTNHVCRFNVT.GLCRD.CKQEIVESFR.....GDD...VRCT........Q...H..G.....NGt.qT..C..Y....INHCNESVIHQDCQKAWHDEQYIRMCAPPGYVLLRCNEKL-NSSKL-CENVSAVTCTDLMTATISSFFGFNGTKYDKGELIEV..I..GNinh..kpkDG.tGA...FV.yKVPAKYNVAIECHRKGNRSL.VSVSSASG....LIYY..A...G..L...EPY.kNIRKALCKFT.GQWGHMLYGLGKELQaynsswvnytE..........E....C..NKKGnssafatcIKQF.............QIRNF.T.KQGADRATENL--MMICGGEMFFCNITKIAD............W....WNN....K.T..EK.RWYp...................waPCTIRSIVDDWASIGKKIYLPPVSGfnnHIRCTQRVSEVLFNWEN..GQ..V.E.FQ---...-A...PSHMQNSFVAVGQKYKLVKLKLIGVAPTDGKR...VTPpD.HHREK-r............
ENV_HV1RH/33-519                  ............LWVTVYYGVPVWKEATTTLFCAseakaykTEVHNVWAKHACVP..TDPN...PQEVLLeNVTENF.N..MW..K..NN..MVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTD.ANLN....GT.N------------V...TSS..SGGTMMENG----..-----..-----EIKNCSFQVTtSRRDK.TQKKYALFYK.....LDV...VPIEkgnispknN...T..S.....NN...T..S..YgnytLIHCNSSVITQACPKVSFEPIPIHYCTPAGFAILKCNDKKFNGTGP-CKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRS..E..NF.......tDN.vKT...II.vQLNA--SVQINCTRPNNNTR.KSITKGPGr..vIYAT..G...Q..I...IGD..-IRKAHCNLSrAQWNNTLKQVVTKLR..........E..........Q....-..----........-FDN.............KTIVF.-.TSSSGGDPEIVLHSFNCGGEFFYCNTTQLFNs..........tWn..sTEG....S.N..NT.GGNdt.................itlPCRIKQIVNMWQEVGKAMYAPPISG...QIKCISNITGLLLTRDG..GE..D.T.TNTTE...IFrlgGGNMRDNWRSELYKYKVVRIEPLGVAPTRAKR...--R.V.VQREKR.............
P89909_SIVTA/26-533               ............QYITVFYGIPVWKNSSVQAFCM.......TPNTNLWATTNCIP..DDHD...YTEVQL.NVSEKF.E..AW..KdrNP..LVAQAESNIHLLFESTLKPCVKLTPMCIKMNCTK.LTST....AP.TSSTPTSSSTTDPC...PNT..D-----ESS-CNA..TLVTN..SMDYENSSICSFAMA.GYRRD.VKKKYNSTWY.....DQE...LVCEk......eN...N..T.....TG...TrgC..Y....MIHCNDSVIKEACEKTYWDTLRLRYCAPAGFAILKCKDTNYTGFGV-CRNVSVVSCTGLMNTTVSSAFGINGSQAENRTEI-WqkH..GV........SN.nSV...II..KLNKHYKLKIVCRRPGNKTV.LPVTIMAG....LVFH..S...Q..Q...YNT..KLRQAWCHFQ.GDWKGAWREVRKTIV..........E..........L....PkeKYRG........TNNT.............RQIWL.S.RQ--WGDPEAANIWLNCQGEFFYCTPDWFVN............W....LNN....E.S..NS.GRNvdvegnncttgkdkrcykrtyvPCHIRSIVNDWYTLSKKTYAPPREG...HLECTSTVTSMMVSLDY..-N..S.K.ERTNV...TL...TANLENIWAYELGRYKLIEIEPIGFAPTEIRR...YV-.G.PTREKR.............
Q72502_9HIV1/34-509               ............LWVTVYYGVPVWKEATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVVLvNVTENF.N..MW..K..DD..MVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTD.LKND....TN.T-------------...NSS..SGRMIMEKG----..-----..-----EIKNCSFNIStSIRDK.VQKEYAFFYK.....LDI...VPID........N...T..S.....--...-..-..Y...rLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDVVIRS..A..NF.......tDN.aKT...II.vQLNT--SVEINCTRPNNNTR.KSIRIQRGpgraFVTI..G...K..I...GNM..--RQAHCNISrAKWNATLKQIASKLR..........E..........Q....-..----........FGNN.............KTIIF.-.KQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNstw.....fnstW...sTEG....S.N..NT.EGSdt.................itlPCRIKQFINMWQEVGKAMYAPPISG...QIRCSSNITGLLLTRDG..GN..N.N.NGSEI...-FrpgGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR...--R.V.VQREKR.............
ENV_HV1BR/34-516                  ............LWVTVYYGVPVWKEATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVVLvNVTENF.N..MW..K..ND..MVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTD.LGNA....TN.T--------NSSNT...NSS..SGEMMMEKG----..-----..-----EIKNCSFNIStSIRGK.VQKEYAFFYK.....LDI...IPID........N...D..T.....--...T..S..Y...tLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRS..A..NF.......tDN.aKT...II.vQLNQ--SVEINCTRPNNNTR.KSIRIQRGpgraFVTI..G...K..I...GNM..--RQAHCNISrAKWNATLKQIASKLR..........E..........Q....-..----........FGNN.............KTIIF.-.KQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNstw.....fnstW...sTEG....S.N..NT.EGSdt.................itlPCRIKQFINMWQEVGKAMYAPPISG...QIRCSSNITGLLLTRDG..GN..N.N.NGSEI...-FrpgGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR...--R.V.VQREKR.............
#=GR ENV_HV1BR/34-516       SS    ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX...XXXXXXXXXXXXX.X..XX..X..XX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXX....XX.X--------XXXXX...XXX..XXXXXXXXX----..-----..-----XXXXXXXXXXXXXXXX.XXXXXXXXXX.....XXX...XXXX........X...X..X.....--...X..X..X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X..XX.......XXX.XXX...XX.XXXXX--XXXXXXXXXXXXXX.-EEEE--STT-TEEEE..-...X..X...XXX..--XXXXXXXXXXXXXXXXXXXXXXXX..........X..........X....-..----........XXXX.............XXXXX.-.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.....XXXXX...XXXX....X.X..XX.XXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX..XX..X.X.XXXXX...-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...--X.X.XXXXXX.............
ENV_HV1Y2/33-498                  ............LWVTVYYGVPVWKEATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVKLeNVTENF.N..MW..K..NN..MVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTD.LRNA....TN.T-------------...-TS..SSWETMEKG----..-----..-----EIKNCSFNITtSIRDK.VQKEYALFYN.....LDV...VPID........N...A..S.....--...-..-..Y...rLISCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNDKKFNGTGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRS..E..NF.......tNN.aKT...II.vQLNE--SVVINCTRPNNNTR.KSINIGPGr..aLYTT..G...E..I...IGD..-IRQAHCNLSkTQWENTLEQIAIKLK..........E..........Q....-..----........FGNN.............KTIIF.-.NPSSGGDPEIVTHSFNCGGEFFYCNSTQLFT............Wn..dTRK....L.N..NT.GRNi...................tlPCRIKQIINMWQEVGKAMYAPPIRG...QIRCSSNITGLLLTRDG..GK..D.T.NGTEI...-FrpgGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKR...--R.V.VQREKR.............
#=GR ENV_HV1Y2/33-498       SS    ............XXXXXXXXXX--EE-----EEEE---TTB-SHHHHHHHHHEEE..--SS...--EEEETTS-EEE.E..GG..G..-H..HHHHHHHHHHHHHHHHSS-SEEEEEEEXSSSXXX.XXXX....XX.X-------------...-XX..XXXXXXXXX----..-----..-----XXXXXXXXXXXXXXXX.XXXXXXXXXX.....XXX...XXXX........X...X..X.....--...-..-..X...XXXXEEEEEEEC-EEBE-SS---BEEE--TTEEEEEE--TT-BSEEE-ESSEEEESBEEEB----BSSEEES----SSS-EEEE..S..BT.......TST.TS-...EE.EEEEE--EEEEEEEE-S-SEE.XXEEETTTX..XXXX-..-...E..E...XCE..-TTEEEEEEEHHHHHHHHHHHHHHHH..........H..........H....-..----........H-TT.............SEEEE.-.----SBSHHHHTEEEEETTEEEEE-TTTTS-............BE..SSGG....G.-..TT.TSEE...................EEEEEEESEEESSSSSSEEE---SSSS...SEEEEEEEEEEEEEEE-..SS..S.S.SSEEE...-EEE-BSSHHHHHHHHHTTEEEEE--XXXXXXXXXXX...--X.X.XXXXXX.............
ENV_HV1MA/33-513                  ............LWVTVYYGVPVWKEATTTLFCAsdaksyeTEVHNIWATHACVP..TDPN...PQEIELeNVTEGF.N..MW..K..NN..MVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTN.VNGT....AV.N-------GTNAGS...NRT..NAELKMEIG----..-----..-----EVKNCSFNIT.PVGSD.KRQEYATFYN.....LDL...VQID........D...S..D.....-N...S..S..Y...rLINCNTSVITQACPKVTFDPIPIHYCAPAGFAILKCNDKKFNGTEI-CKNVSTVQCTHGIKPVVSTQLLLNGSLAEEEIMIRS..E..NL.......tDN.tKN...II.vQLNE--TVTINCTRPGNNTR.RGIHFGPGq..aLYTT..G...I..V...GDI..--RRAYCTINeTEWDKTLQQVAVKLG..........S..........L....-..----........-LNK.............TKIIF.-.NSSSGGDPEITTHSFNCRGEFFYCNTSKLFNs..........tW....QNNgarlS.N..ST.ESTgs.................itlPCRIKQIINMWQKTGKAMYAPPIAG...VINCLSNITGLILTRDG..GN..S.S.DNSDN..eTLrpgGGDMRDNWISELYKYKVVRIEPLGVAPTKAKR...--R.V.VEREKR.............
#=GR ENV_HV1MA/33-513       SS    ............XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..XXXX...XXXXXXXXXXXXX.X..XX..X..XX..XXXXXXXXXXXXXXXXXXXXX---SS----XXXX.XXXX....XX.X-------XXXXXX...XXX..XXXXXXXXX----..-----..-----XXXXXXXXXX.XXXXX.XXXXXXXXXX.....XXX...XXXX........X...X..X.....-X...X..X..X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..X..XX.......XXX.XXX...XX.XXXXX--XXXXXXXXXXXXXX.XXXXXXXXX..XXXXX..X...X..X...XXX..--XXXXXXXXXXXXXXXXXXXXXXXX..........X..........X....-..----........-XXX.............XXXXX.-.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX..........XX....XXXXXXXX.X..XX.XXXXX.................XXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXXXXXX..XX..X.X.XXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...--X.X.XXXXXX.............
ENV_SIVEK/127-481                 ........wrsv----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..NNSVN..QTNHVQMQNCSFNVTtELRDK.KKQVYSLFYM.....GDI...IPLD.......tN...N..S.....SGn.nS..Q..Y...rLINCNTTAVTQACPKISFEPIPIYYCAPPGFAIIKCNDQDFNGTGE-CNNVSTVQCTHGIKPVISTQLILNGSLATSNIVI--..-..-R........NNskDT...LL.vQLNE--SIPINCTRPGNKTR.GQVQIGPG....MTFYniE...N..I...IGD..-TRQAYCEVN.RTWEQIWNTTKQ---..........-..........I....-..---I........INNR.............KNITF.-.IPNPGGDLEVTNLMINCGGEFFYCNTSQLFT............-....-NQ....N.G..NT.TGNi...................tlQCRIRQIVNLWTRVGKGIYAPPIKG...PINCLSNITGIILDYT-..-K..S.G.TEKYT...IYp.tGGDMTNLWRQELYKYKVVSIEPIGVAPGKAKR...--H.T.VTRQKR.............
ENV_HV1YB/130-481                 .......nsttn----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..--RTE..DLEDRQMKNCSFNITtEIRDR.KKQVYSLFYV.....EDV...VPIK........D...G..T.....DN...N..T..Y...rLINCNTTAVTQACPKTTFEPIPIHYCAPPGFAIMKCNEGNFSGNGS-CTNVSTVQCTHGIKPVISTQLILNGSLDTDDIVIRH..H..GG........--..NL...LV..QWNE--TVSINCTRPGNNTG.GQVQIGPAm..tFYNI..E...K..I...VGD..-VRQAYCNVS.EEWGSMWNKTKKKIK..........R..........L....-..----........LGNN.............TTFKA.-.QDKNGGDLEVTHLMFNCXGEFFYCNTSRLFN............E....SEN....KtN..KT.IIL......................PCRIKQIVBLWTRVXKGIYAPPIRG...NLSCXSSITGLILEHSG..EN..G.N.-KTVY...PS...GGNMVNLWRQELYKYKVVSIEPIGVAPGKAKR...--R.T.VSREKR.............
ENV_HV1ET/140-500                 .......tnnsi----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..NSANDEMKNCSFNITtELRDK.KRKAYALFYK.....LDI...VPLN........N...G..S.....--...T..D..Y...rLINCNTSTITQACPKVSLDPIPIHYCAPAGYAILKCRDKTFTGTGP-CHNVSTVQCTHGIKPVVSTQLLLNGSIAEGETIIRF..E..NL.......tNN.aKI...II.vQLNE--SVEITCTRPSNNTR.ESIRIGPGq..tFYAT..G...D..I...IGD..-IRQAHCNISeEKWNKTLQKVKEKLQ..........K..........H....-..----........-FPN.............KTIEF.-.KPSSGGDLEITTHSFNCGGEFFYCNTSNLFNstk......lelF....NSS....-.-..-T.NLNi...................tlQCRIKQIINMWQGVGRAMYAPPIEG...IIMCRSNITGLLLTRDG..AK..E.P.HSTKE...IFrpeGGDMRDNWRSELYKYKVVEIKPLGVAPTKPKR...--R.V.VEREKR.............
ENV_SIVCZ/143-500                 ....nqtssppl----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..-----EMKNCSFNVTtELRDK.KKQVYSLFYV.....EDV...VNLG........N...E..N.....--...N..T..Y...rIINCNTTAITQACPKTSFEPIPIHYCAPAGFAILKCNDKDFSGKGK-CTNVSTVHCTHGIKPVVTTQLLINGSLAEGNITVRV..E..NK........SK..NTdvwIV..QLVE--AVSLNCHRPGNNTR.GEVQIGPG....MTFY..N...I..-...ENVvgDTRSAYCKINgTTWNRTVEEVKKALA..........T..........S....-..---S........NRTA.............ANITL.-.NRASGGDPEVTHHMFNCGGEFFYCNTSQIFT............-....---....D.N..IT.NGIi...................ilPCRIRQIVSSWMRVGRGIYAPPIRG...NITCNSNITGLLLTSDT..PV..T.N.NSGNL...TFrptGGNMKDIWRSELYKYKVVRIEPLSVAPTKARR...--H.T.VARQK-drqkr........
ENV_HV1YF/127-488                 geernntnmttr----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..---EP..DIGYKQMKNCSFNATtELTDK.KKQVYSLFYV.....EDV...VPIN........A...Y..N.....-K...T..-..Y...rLINCNTTAVTQACPKTSFEPIPIHYCAPPGFAIMKCNEGNFSGNGS-CTNVSTVQCTHGIKPVISTQLILNGSLNTDGIVIRN..D..S-........HS..NL...LV..QWNE--TVPINCTRPGNNTG.GQVQIGPAm..tFYNI..E...K..I...VGD..-IRQAYCNVSkELWEPMWNRTREEIK..........K..........I....-..----........LGK-.............NNITFrA.RERNEGDLEVTHLMFNCRGEFFYCNTSKLFN............E....-EL....L.N..ET.GEPi...................tlPCRIRQIVNLWTRVGKGIYAPPIRG...VLNCTSNITGLVLEYSG..GP..D.T.KETIV...-Yp.sGGNMVNLWRQELYKYKVVSIEPIGVAPGKAKR...--R.T.VSREKR.............
B7UES4_SIV/21-533                 ............QYVTVFYGTPKWRDSNDTLMCV.......TANKSLWVTTACLPsfDEDE...IEQPIP.GVEEVFyN..VS..D..NE..VVRQAWFGIASLLDAVLKPCVKLTPFCVKMQCED.PSAN....FT.EPITPISTAAPTTV...TSS..TGGQTTTIGLGVD..NSTVK..-PETEKLKQCRYNIT.GLCRD.CKIEMNQTFD.....LED...VACT........N...N..T.....--...-..C..Y....MSHCNTSVITQDCQYAVSDQQMVKLCAPPGRVLIKCNNRTE---NP-CRNISAVTCTPPLSATVSSFFGFNGTRHKASRLIPI..T..GDlnhkpregTG..VY...VM..AIADKYKLEIECIRKGNRSI.VSVNSASG....LVYY..A...G..LepyGNI..--DKGLCRFK.GQWGWMLYALGKGLE..........K..........EnntwA..NYTG........VNITgigrnsttfakaiKRFKF.DeKLKRGGDDAAENMMMMCGGYMWFCNITKILK...........tW....NNA....S.DpkWY.PWS......................QCRLRQNVDDWMKVGRRIYLPPQPGfnnRIRCTQRVTEMFLEIQK..VE..N.G.TQVSL...LP...PSDNVNQFVSVASDYKLVELELIGFAPTETQR...YQP.R.------nkrg.........
ENV_HV190/136-500                 .....nstssme----------------------.......--------------..----...------.------.-..--..-..--..----------------------------------.----....--.--------------...---..-------------..-----..--AGGELTNCSFNVTtVLRDK.QQKVHALFYR.....LDV...VPID........N...N..S.....--...T..Q..Y...rLINCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGL-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEQIIIRT..K..NI.......sDN.tKN...II.vQLKT--PVNITCTRPNNNTR.TSIHLGPGr..aFYAT..G...D..I...IGD..-IRQAHCNISrTDWNKTLHQVVTQLG..........I..........H....-..----........-LNN.............RTISF.-.KPNSGGDMEVRTHSFNCRGEFFYCNTSGLFNs..........sWemhtNYT....S.N..DT.KGNen.................itlPCRIKQIVNMWQRVGRAMYAPPIQG...NIMCVSNITGLILTIDE..GN..A.S.AE-NY...TFrpgGGDMRDNWRSELYKYKVVKIEPLGIAPTKTRR...--R.V.VEREKR.............
A0A1B4WRK4_SIV/24-543             ............LYVTVFYGVPVWKNSTVQAFCM.......TPTNRLWATTNCIP..DDHD...YTEVPL.NITEPF.E..AWadR..NP..LVAQAGSNIHLLFEQTLKPCVKLSPLCIKMSCVP.LNGS....KT.G--STTAPSTTQTT..kSTQ..RPCKQYEKNNTLQacNDTIIerEMDEEPASNCTFAMA.GYIRD.QKKNYSVVWD.....DRE...IYCK........N...G..SdnsskVK...E..C..Y....MIHCNDSVIKEACDKTYWDELRLRYCAPAGYALLKCNDHDYNGYKQNCSNVSVVHCTGLMNTTVSTGLLLNGSYSENRTQIWQ..K..HR.......vNN.dSV...II..LFNKFYNLTVTCKRPGNKTV.LPVTIMAG....LVFH..S...Q..K...YNM..RLRQAWCHFQ.GNWKGAWKEVREEIV..........K..........L....PkdRYQG........TNNT.............EQIKL.L.RQ--DGDPEAANLWFNCQGEFFYCKMDWFLN............Y....INN....A.T..TTfDGNkcgnktkkgn.apgpcvqrtyvACHIRSVVNDWYTVSKLTYAPPREG...HLQCTSTVTGMTVELNY..-N..N.K.NVTNV...TL...SPQIEGIWAAELGRYKLVEITPIGFAPTEVRR...YTG.G.HERQKR.............
ENV_HV1A2/33-509                  ............LWVTVYYGVPVWKEATTTLFCAsdaraydTEVHNVWATHACVP..TDPN...PQEVVLgNVTENF.N..MW..K..NN..MVEQMQEDIISLWDQSLKPCVKLTPLCVTLNCTD.LGKA....TN.T-------------...NSS..NWK--EEI-----..-----..---KGEIKNCSFNITtSIRDK.IQKENALFRN.....LDV...VPID........N...A..S.....TTtnyT..N..Y...rLIHCNRSVITQACPKVSFEPIPIHYCTPAGFAILKCNNKTFNGKGP-CTNVSTVQCTHGIRPIVSTQLLLNGSLAEEEVVIRS..D..NF.......tNN.aKT...II.vQLNE--SVAINCTRPNNNTR.KSIYIGPGr..aFHTT..G...R..I...IGD..-IRKAHCNISrAQWNNTLEQIVKKLR..........E..........Q....-..----........FGNN.............KTIVF.-.NQSSGGDPEIVMHSFNCRGEFFYCNTTQLFNn..........tW...rLNH....T.E..GT.KGNdt.................iilPCRIKQIINMWQEVGKAMYAPPIGG...QISCSSNITGLLLTRDG..GT..N.VtNDTEV...-FrpgGGDMRDNWRSELYKYKVIKIEPLGIAPTKAKR...--R.V.VQREKR.............
ENV_HV2RO/21-511                  ............QYVTVFYGVPTWKNATIPLFCA.......TRNRDTWGTIQCLP..DNDD...YQEITL.NVTEAF.D..AW..N..NT..VTEQAIEDVWHLFETSIKPCVKLTPLCVAMKCSS.TESS....TG.NNTTSKSTSTTTTT...PTD..QEQEISEDTPCAR..ADNCS..GLGEEETINCQFNMT.GLERD.KKKQYNETWY.....SKD...VVCEt......nN...S..T.....NQ...T.qC..Y....MNHCNTSVITESCDKHYWDAIRFRYCAPPGYALLRCNDTNYSGFAPNCSKVVASTCTRMMETQTSTWFGFNGTRAENRTYIYW..H..GR........DN..RT...II..SLNKYYNLSLHCKRPGNKTV.KQIMLMSG....HVFH..Sh.yQ..P...INK..RPRQAWCWFK.GKWKDAMQEVKETLA..........K..........H....P..RYRG........TNDT.............RNISF.A.APGKGSDPEVAYMWTNCRGEFLYCNMTWFLN............W....IEN....K.T..HR.NYA......................PCHIKQIINTWHKVGRNVYLPPREG...ELSCNSTVTSIIANIDW..QN..-.N.NQTNI...TF...SAEVAELYRLELGDYKLVEITPIGFAPTKEKR...YSS.A.HGRHTR.............
Q9Q6V8_9HIV1/30-144               ............LWVTVYYGVPVWKEATTTLFCAsdakaysKEVHNVWATYACVP..TDPS...PQEIPLkNVTENF.N..MG..K..NN..MVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTD.LKKE....VT.STNT----------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------ssikm........
C7TQ97_9HIV1/33-147               ............LWVTVYYGVPVWRDAETTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEMNLtNVTEYF.N..MW..K..NN..MVEQMHADIISLWDQSLKPCVKLTPLCVTLNCTD.ITTN....RT.SRN-----------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------htdinr.......
ENV_HV1MV/35-523                  ............LYATVYSGVPVWEEAAPVLFCAsdanltsTEQHNIWASQACVP..TDPN...PHEFPLgNVTDNF.D..IW..K..NY..MVDQMHEDIISLWEQSLKPCEKMTFLCVQMNCVD.LQTN....KT.G-------------...---..---LLNETI----..-----..----NEMRNCSFNVT.TVLTD.KKEQKQALFY.....VSDlskVNDS........N...A..V.....NG...T..T..Y...mLTNCNSTIIKQACPKVSFEPIPIHYCAPTGYAIFKCNDTDFNGTGL-CHNISVVTCTHGIKPTVSTQLILNGTLSREKIRIMG..K..NIt......eSA..KN...II.vTLNT--PINMTCIREGIAEV.QDIYTGPMr.wrSMTL..K...R..S...NNTspRSRVAYCTYNkTVWENALQQTAIRYL..........N..........L....-..--VN........QTEN.............VTIIF.-.SRTSGGDAEVSHLHFNCHGEFFYCNTSGMFNytfinctksgcqE....IKG....S.N..ET.NKNg...................tiPCKLRQLVRSWMKGESRIYAPPIPG...NLTCHSNITGMILQLDQ..PW..N.S.TGENT...LRp.vGGDMKDIWRTKLYNYKVVQIKPFSVAPTKMSRpiiNIH.T.PHREKR.............
Q9YX49_9HIV1/33-144               ............LWVTVYYGVPVWRDAETTLFCAseakayeKEVHNIWATHACVP..TDPN...PQEVALiNVTENF.N..MW..K..ND..MVEQMHEDIISLWNEGLKPCAKLTSLCVTFTCIN.ATTT....NS.T-------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------ngtvi........
C7TQ73_9HIV1/31-510               ............LWVTVYYGVPVWRDAKTTLFCAsdakaydPEVHNVWATHACVP..TNPD...PQEIPLhNVTEYF.N..MW..K..NN..MVEQMHEDIISLWDQSLKPCLKLTPLCVTLNCAN.IKSN....NN.SS------------...N-S..SETTAEDMG----..-----..----REIKNCSFNMTtILKDK.KEKVHALFYR.....LDI...VPIE........G...K..S.....NS...S..E..Y...rLINCNTSAITQACPKVTFDPIPIHYCAPAGFAILKCKDEEFNGTGP-CKNVSSVQCTHGIKPVVSTQLLLNGSLAKEKVMVRS..K..NF.......tDN.tDN...II.vQLAE--PVVINCTRPNNNTR.KSIRIGPGq..sFYAT..G...D..I...IGD..-IRQAHCNISkGQWSKTLSHVAEQLK..........I..........H....-..----........-FPN.............KTIAF.-.NQSSGGDLEITMHSFNCRGEFFYCNTSGLFNs..........tW....--L....V.N..ST.RENgtstm............gnitlPCRIKQIVNMWQGVGQAMYAPPVAG...MIQCVSNITGLILTRDG..GS..N.D.NSTDNnteTFrptGGNMKDNWRSELYKYKVVQLEPLGLAPTEAKR...--R.V.VEREKR.............
ENV_HV1B9/33-508                  ...........t-WVTIYYGVPVWREATTTLFCAsdakaydTEVHNVWATHACVP..TDPN...PQEVVLgNVTENF.N..MW..K..NN..MVDQMHEDIISLWDESLKPCVKLTPLCVTLNCTN.LNIT....KN.TTN-----------...PTS..SSWGMMEKG----..-----..-----EIKNCSFYITtSIRNK.VKKEYALFNR.....LDV...VPIE........N...T..N.....-N...T..K..Y...rLISCNTSVITQACPKVSFQPIPIHYCVPAGFAMLKCNNKTFNGSGP-CTNVSTVQCTHGIRPVVSTQLLLNGSLAEEDIVIRS..E..NF.......tDN.aKT...II.vQLNE--SVVINCTRPNNNTR.RRLSIGPG....RAFY..A...RrnI...IG-..DIRQAHCNISrAKWNNTLQQIVIKLR..........E..........K....-..----........-FRN.............KTIAF.-.NQSSGGDPEIVMHSFNCGGEFFYCNTAQLFNs..........tWn..vTGG....T.N..GT.EGNdi.................itlQCRIKQIINMWQKVGKAMYAPPITG...QIRCSSNITGLLLTRDG..GN..StE.TETEI...-FrpgGGDMRDNWRSELYKYKVVRIEPIGVAPTRAKR...--R.T.VQREKR.............
#=GR ENV_HV1B9/33-508       SS    ...........X-XXXXXXXXXXXX------B------TT--SHHHHHHHHH---..----...S--EE-TT--EEE.E..GG..G..-H..HHHHHHHHHHHHHHHSS--SEEESXXXXXXXXXX.XXXX....XX.XXX-----------...XXX..XXXXXXXXX----..-----..-----XXXXXXXXXXXXXXXX.XXXXXXXXXX.....XXX...XXXX........X...X..X.....-X...X..X..X...XXXXXSS-EEE------------B--B--TT--EEEE--SS--SEEE-ESSEEEESB---B----BSSEEES----SSS-EEE-..S..-S.......S-T.TSE...EE.EEEEE--EEEEEEEE------.--------....----..-...----...---..---EEEEEEEHHHHHHHHHHHHHHHH..........H..........H....-..----........-TSS.............--EEE.-.----SB-HHHHTEEEESSS-EEEE--TTTS--..........EE-..----....-.-..--.--SSE.................EEEEEEB-SEEE-SSSS-EEE-----SS...-EEEEEEEEEEEEEE--..-S..SS-.-S-EE...-EEE----THHHHHTTSSSEE-XXXXXXXXXXXXXXX...--X.X.XXXXXX.............
W8E999_9PLVG/34-520               ............LWVTVYYGVPVWRDAETTLFCAsdakaydTEAHNVWATHACVP..TDPN...PQEVVLgNVTENF.N..MW..D..NP..MVQQMHDDVISLWDQSLKPCVKLTPLCVTLNCTN.WTAN....ST.TNNSTGTNVTTAKP...PTT..ATP------NTIE..-----..----GEIKNCSFNITtSI-QT.KVADHALFHK.....IDI...VPID........D...G..N.....-T...T..K..Y...rLLQCNTSVITQACPKISFEPIPIHYCTPAGFAILKCNNKTFSGKGP-CKNVSTVQXTHGIRPVVSTQLLLNGSLAEKEVVIRS..S..NF.......sDN.aKI...II.vQLNE--TVKINCSRPNNNTR.KGIHLGLGr..aW-YA..T...E..R...ITG..DIRKAHCNIStSEWNNALKKIVKKLR..........E..........Q....-..----........FG-N.............KTIVF.-.NQPSGGDPEIVTHSFNCGGEFFYCNTTSLFNs..........tWn.ntNSN....E.N..NT.TGNni.................ttiHCRIKQIVNRWQEVGRAMYAPPIEG...PIMCSSNITGLLLTRDG..GNinN.T.NGTEI...-FrpgGGDMRDNWRSELYKYKIVKIEPLGVAPTEAKR...--R.V.VQREKR.............
ENV_HV1AN/34-142                  ............LYATVYAGVPVWEDATPVLFCAsdanltsTEKHNIWASQACVP..TDPT...PYEYPLhNVTDDF.N..IW..K..NY..MVEQMQEDIISLWDQSLKPCVQMTFLCVQMECTN.IAGT....TN.E-------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------nl...........
ENV_SIVSP/24-535                  ............QYVTVFYGIPAWRNATVPLFCA.......TKNRDTWGTTQCLP..DNGD...YSELAI.NVTEAF.D..AW..D..NT..VTEQAIEDVWNLFETSIKPCVKLTPLCITMRCNK.SETDrwglTG.TPAPTTTQTTTTQAsttPTSpiTAKVVNDSDPCIK..INNCT..GLEQEPMVSCKFNMT.GLKRD.KKREYNETWY.....SRD...LVCEq.....nsN...E..T.....DS...K..C..Y....MNHCNTSVIQESCDKHYWDAIRFRYCAPPGYALLRCNDSNYSGFAPNCTKVVVSSCTRMMETQTSTWFGFNGTRAENRTYIYW..H..GR........SN..RT...II..SLNKYYNLTMRCRRPGNKTV.LPVTIMSG....LVFH..S...Q..P...INE..RPKQAWCWFG.GEWKKAIQEVKETLV..........K..........H....P..RYTG........TNKT.............EQIKL.T.APG-GGDPEVTFMWTNCRGEFLYCKMNWFLN............W....VEN....I.Q..NG.SRWtsqnqke........rqrrnyvPCHIRQIINTWHKVGKNVYLPPREG...DLTCNSTVTSLIAEIDW..IN..-.G.NETNI...TM...SAEVAELYRLELGDYKLVEITPIAFAPTSVKR...YTT.TgASRNKR.............
ENV_SIVTN/23-502                  ...........y-YTTVFYGVPVWKEAQPTLFCAsdaditsRDKHNIWATHNCVP..LDPN...PYEVTLaNVSIRF.N..ME..E..NY..MVQEMKEDILSLFQQSFKPCVKLTPFCIKMTCTM.----....TN.TTNKTLNSATTTLT...PTV..NLSSI--------..-----..--PNYEVYNCSFNQTtEFRDK.KKQIYSLFYR.....EDI...VKED........G...N..N.....-N...S..Y..Y....LHNCNTSVITQECDKSTFEPIPIRYCAPAGFALLKCRDQNFTGKGQ-CSNVSVVHCTHGIYPMIATALHLNGSLEEEETKAYF..V..NT........SV..NT...PLlvKFNV--SINLTCERTGNNTR.GQVQIGPG....MTFY..N...I..-...ENVvgDTRKAYCSVNaTTWYRNLDWAMAAIN..........T..........T....-..-MRA........RNET.............VQQTF.-.QWQRDGDPEVTSFWFNCQGEFFYCNLTNWTN...........tW...tANR....T.N..NT.HGTl...................vaPCRLRQIVNHWGIVSKGVYLPPRRG...TVKCHSNITGLIMTAEK..DN..N.N.SYTPQ...-F...SAVVEDYWKVELARYKVVEIQPLSVAPRPGKR...---.-.------peikanhtrsrr.
ENV_HV192/33-146                  ............LWVTVYYGVPVWKEAKTTLFCAsdakaydAEVHNVWATHACVP..TDPN...PQEMVLeNVTENF.N..MW..E..ND..MVEQMHQDIISLWDQSLKPCVKLTPLCVTLHCSN.RTID....YN.--------------...---..-------------..-----..---------------.-----.----------.....---...----........-...-..-.....--...-..-..-....-----------------------------------------------------------------------------------..-..--........--..--...--..--------------------.--------....----..-...-..-...---..----------.---------------..........-..........-....-..----........----.............-----.-.-------------------------------............-....---....-.-..--.---......................-------------------------...-----------------..--..-.-.-----...--...--------------------------------...---.-.------nrtdnmgg.....
ENV_HV2BE/24-510                  ............QYVTVFYGIPAWKNASIPLFCA.......TKNRDTWGTIQCLP..DNDD...YQEIIL.NVTEAF.D..AW..N..NT..VTEQAVEDVWHLFETSIKPCVKLTPLCVAMNCSR.VQGN....TT.TPNPRTSSSTTSRP...PTS..AASIINETSNCIE..NNTCA..GLGYEEMMQCEFNMK.GLEQD.KKRRYKDTWY.....LED...VVCD........N...T..T.....AG...T..C..Y....MRHCNTSIIKESCDKHYWDAMRFRYCAPPGFALLRCNDTNYSGFEPKCTKVVAASCTRMMETQTSTWFGFNGTRAENRTYIYW..H..GR........DN..RT...II..SLNKYYNLTMRCKRPGNKTV.LPITLMSG....LVFH..S...Q..P...INT..RPRQAWCRFG.GRWREAMQEVKQTLV..........Q..........H....P..RYKG........INDT.............GKINF.T.KPGAGSDPEVAFMWTNCRGEFLYCNMTWFLN............W....VED....K.N..QT.RRN......................YCHIKQIINTWHKVGKNVYLPPREG...ELACESTVTSIIANIDI..DK..N.R.THTNI...TF...SAEVAELYRLELGDYKLIEITPIGFAPTDQRR...YSS.T.PVRNKR.............
#=GC SS_cons                      ...........XSSXXXXEEEXXEEE-----EEEE---TTB-SHHHHHHHHHEEE..--SS...S-EEEETTCEEEE.E..GG..G..TH..HHHHHHHHHHHHHHHHSS-SEEEEECCSSCCEEE.XTTX....XE.EXX-----------...EEE..ETTTTEEEE----..-----..-----EEEXSSSXXXSSEEEE.EEEEEXTTSX.....EEE...EEEX........X...S..S.....-X...X..X..X...TTXSECEEEEECEEECEECCE--BEEB--TTEEEEEE--TT-BSEEE-ESSEEEESBEEEBSSSEBSSEEESS---SSS-EEEE..S..BS.......SST.TSE...EE.EEEEE--EEEEEEEE-CSSCC.SEEEETTTTTBTCEEE..-...E--E...SCC..-TTEEEEEEEHHHHHHHHHHHHHHHH..........H..........H....-..----........CTST.............SEEEE.-.----SBSHHHHTEEEEETTEEEEEETTTTS-EEE.....SSHCCE..CCHH....H.H..CC.CCCSE.................EEEEEEEESEEECSSSSCEEEEE-STSS...TEEEEEEEEEEEEEEES..SS..SST.SSEEE...-EEESBSSTHHHHHHHHTTEEEEEEXSXEEEXXXXXX...--X.X.XXXXXX.............
#=GC seq_cons                     .............aVTVaYGVPVW+-ApssLFCA.......T-s+NlWATpsClP..s-ss....pEh.L.NVTEtF.s..hW..c..Np..hV-QhppDIhSLa-poLKPCVKLTPLCVphpCsp.hpts....ts.s................................................phpNCoFNhT.tlppc.hpp.ashhah......-....lshp........s...s..s..........p.....Y....hhpCNoSsIpQACsKssa-sI.l+YCAPsGaAlLKCssppasGhu..CpNVSsVpCT+slcsslSTthhlNGohscpphhIh...p..sh........ss..ps...II..plsp..slplsCpRPsNpTh.htlpltsG....hhhh..u...p..h...hs.....RpAaCphs.spWptshpplhtplh..........p.................................s.............ppIhh...p.ssGGD.Elshh.hNCtGEFFYCNho.hhN..................pt......s..to.tt.....................hh.C+I+QIls.WtpVG+shYhPPhtG....lpC.SslTulllph-h...p..s.p.sts......h...uuphps.WRsELh+YKlVcIcPlGhAPTcs+R.....p.s.spRpKR.............
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