GenomeNet

Database: Pfam
Entry: GvpD_P-loop
LinkDB: GvpD_P-loop
Original site: GvpD_P-loop 
#=GF ID   GvpD_P-loop
#=GF AC   PF07088.14
#=GF DE   GvpD gas vesicle protein, P-loop domain
#=GF PI   GvpD;
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Pfam-B_14302 (release 10.0)
#=GF GA   24.00 24.00;
#=GF TC   24.00 24.00;
#=GF NC   23.90 23.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0023
#=GF RN   [1]
#=GF RM   8763925
#=GF RT   Transcript analysis of the c-vac region and differential
#=GF RT   synthesis of the two regulatory gas vesicle proteins GvpD and
#=GF RT   GvpE in Halobacterium salinarium PHH4. 
#=GF RA   Kruger K, Pfeifer F; 
#=GF RL   J Bacteriol 1996;178:4012-4019.
#=GF RN   [2]
#=GF RM   12864859
#=GF RT   Regulation of the expression of gas vesicle genes in Haloferax
#=GF RT   mediterranei: interaction of the two regulatory proteins GvpD
#=GF RT   and GvpE. 
#=GF RA   Zimmermann P, Pfeifer F; 
#=GF RL   Mol Microbiol 2003;49:783-794.
#=GF RN   [3]
#=GF RM   17379705
#=GF RT   GvpD-induced breakdown of the transcriptional activator GvpE of
#=GF RT   halophilic archaea requires a functional p-loop and an
#=GF RT   arginine-rich region of GvpD.
#=GF RA   Scheuch S, Pfeifer F;
#=GF RL   Microbiology (Reading). 2007;153:947-958.
#=GF RN   [4]
#=GF RM   11160801
#=GF RT   A p-loop motif and two basic regions in the regulatory protein
#=GF RT   GvpD are important for the repression of gas vesicle formation
#=GF RT   in the archaeon Haloferax mediterranei.
#=GF RA   Pfeifer F, Zotzel J, Kurenbach B, Roder R, Zimmermann P;
#=GF RL   Microbiology (Reading). 2001;147:63-73.
#=GF RN   [5]
#=GF RM   25648404
#=GF RT   Haloarchaea and the formation of gas vesicles.
#=GF RA   Pfeifer F;
#=GF RL   Life (Basel). 2015;5:385-402.
#=GF RN   [6]
#=GF RM   31191505
#=GF RT   Improved GFP Variants to Study Gene Expression in Haloarchaea.
#=GF RA   Born J, Pfeifer F;
#=GF RL   Front Microbiol. 2019;10:1200.
#=GF DR   INTERPRO; IPR009788;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This family consists of several archaeal GvpD gas vesicle
#=GF CC   regulatory proteins. GvpD is involved in the regulation of gas
#=GF CC   vesicle formation and functions as a repressor through the
#=GF CC   interaction and the breakdown induction of the transcriptional
#=GF CC   activator GvpE [1,2,3, 4,5]. This domain includes the P-loop and
#=GF CC   the basic region 1 (bR1, an arginine-rich region) which are
#=GF CC   essential for GvpD repressive function [3,4].
#=GF SQ   42
#=GS E4NUR9_HALBP/23-211      AC E4NUR9.1
#=GS A0A2K5AS88_9ARCH/25-207  AC A0A2K5AS88.1
#=GS A0A2V3J812_9EURY/5-187   AC A0A2V3J812.1
#=GS GVPD1_HALSA/23-211       AC P13043.1
#=GS A0A0Q4BCG1_9ARCH/15-76   AC A0A0Q4BCG1.1
#=GS M1XPG1_NATM8/23-211      AC M1XPG1.1
#=GS A0A2V3JC86_9EURY/10-196  AC A0A2V3JC86.1
#=GS A0A557SVJ2_9ARCH/40-215  AC A0A557SVJ2.1
#=GS A0A4E0PZ13_9EURY/74-175  AC A0A4E0PZ13.1
#=GS F4C0Q2_METSG/13-208      AC F4C0Q2.1
#=GS A0A6A7LEW1_9ARCH/20-205  AC A0A6A7LEW1.1
#=GS A0A2V3JK38_9EURY/6-206   AC A0A2V3JK38.1
#=GS T0M120_9ARCH/11-214      AC T0M120.1
#=GS A0A484ID77_9ARCH/42-216  AC A0A484ID77.1
#=GS A0A1F2P6N5_9EURY/7-197   AC A0A1F2P6N5.1
#=GS T0LHY1_9ARCH/10-215      AC T0LHY1.1
#=GS V4Y4N8_9ARCH/23-216      AC V4Y4N8.1
#=GS A0A2H5VCC7_9ARCH/36-217  AC A0A2H5VCC7.1
#=GS A0A1F2PB51_9EURY/19-198  AC A0A1F2PB51.1
#=GS A0A2K5ARS5_9ARCH/51-229  AC A0A2K5ARS5.1
#=GS A0A5B2Z181_9ARCH/40-215  AC A0A5B2Z181.1
#=GS A0A4E0PZ13_9EURY/6-78    AC A0A4E0PZ13.1
#=GS A0A1F2P5C1_9EURY/16-197  AC A0A1F2P5C1.1
#=GS A0A554NBK5_9EURY/23-211  AC A0A554NBK5.1
#=GS G7WNE0_METH6/7-194       AC G7WNE0.1
#=GS B5IAA9_ACIB4/6-212       AC B5IAA9.1
#=GS Q9HJL4_THEAC/4-201       AC Q9HJL4.1
#=GS W9DQA0_METTI/6-88        AC W9DQA0.1
#=GS A0A1F2PA21_9EURY/7-198   AC A0A1F2PA21.1
#=GS A0A2K5ARY1_9ARCH/13-202  AC A0A2K5ARY1.1
#=GS A0B6C4_METTP/7-204       AC A0B6C4.1
#=GS A0A5B9D9P2_9ARCH/22-213  AC A0A5B9D9P2.1
#=GS V4XT84_9ARCH/23-211      AC V4XT84.1
#=GS U1QQ25_9EURY/32-225      AC U1QQ25.1
#=GS B5IFR8_ACIB4/8-193       AC B5IFR8.1
#=GS K0IL09_NITGG/5-188       AC K0IL09.1
#=GS A0A2V3JLE7_9EURY/12-189  AC A0A2V3JLE7.1
#=GS GVPD2_HALSA/23-211       AC Q9HHT2.1
#=GS A0A518S857_9EURY/23-211  AC A0A518S857.1
#=GS T0N0U4_9ARCH/8-215       AC T0N0U4.1
#=GS A0A218ZVV7_9ARCH/4-211   AC A0A218ZVV7.1
#=GS W9DQA0_METTI/71-173      AC W9DQA0.1
E4NUR9_HALBP/23-211                 .................ISRFFTGD..PGHAL.LVKGAPGTGKTL..FTIR.G.L....D..V...L..E.R..D..G.D.V.L.YV.S...T.R.V..D..Q.DT.V.H...EMY.............FEEH.F.SL..DKT...........................SIL.D.L.......S..Q..D...P...F..E....LP.....L....DMD........VP..FE..R.L..D.L....D....A...L.L.E.W.I.Q.Q.V...KA.ASKR...L...TIA.FD..SWE...LI.Y.E.........YLA.....TR..HD..EPPD....IE...T.VTTQLVA..L...AR..Q...E.D..I.R..L....L.L..V......S...E....T.....A...D......S....S....P........L.......E....Y..I.V.DGVVTL.......QV...AEDE..R..GRTRRHLRLE.........................................................................................................
A0A2K5AS88_9ARCH/25-207             ..............ldr---FLR-T..KPTSL.LIRGPPGAGKTT..LALE.L.L....K..A...S..N.R..A..-.-.G.Y.YI.S...T.R.V..S..L.KK.I.K...EQFpwi.......adlLKDE.Y.IV..NSK...........................DYN.A.N.......G..N..D...D...G..S....IP....vV....DAR........LG..SA..K.G..V.L....E....R...V.L.D.F.I.L.M.-...--.-HGN...S...VII.LD..SWD...AI.A.K.........---.....-E..AD..KNER....LK...-.AEKSMVY..M...AD..A...N.N..G.L..L....I.F..I......S...E....E.....P...E......E....N....T........V.......S....Y..L.V.DGVITL.......DM...EYR-..D..GFRMRKMR--fd.......................................................................................................
A0A2V3J812_9EURY/5-187              ........enalksmes--------..--YTI.LLKGAPGTGKTT..YAIT.L.L....E..R...L..C.R.eD..T.K.G.V.YI.S...T.R.I..D..P.AV.L.Y...RQF.............PGLE.S.RV..PPR...........................NII.D.A.......T..Q..S...E...F..S....-E.....A....EFQ........VL..Y-..-.E..D.T....M....S...F.L.R.A.V.Y.S.L...VA.EEDV...T...ILI.ID..SWD...AV.S.-.........FQI.....GR..EN..-QMS....IE...K.LENSMLD..I...AR..K...T.K..T.R..L....L.L..I......T...E....Y.....S...G......E....R....K........L.......D....Y..L.V.DGIVRL.......DK...-EEI..E..GRSVRRLF--id.......................................................................................................
GVPD1_HALSA/23-211                  .................LSQFFMGD..AGETL.LINGAPGTGKTL..FTIR.G.L....D..V...L..D.R..D..S.D.V.L.YV.S...T.R.V..D..Q.ET.V.H...EMY.............FADH.S.SL..DTT...........................AIL.D.L.......F..Q..D...P...F..E....LP.....L....DVD........VP..FE..K.L..D.L....D....S...L.L.E.W.I.Q.E.I...NA.ATTQ...L...TIA.FD..SWE...LI.Y.E.........YLA.....VR..HD..DPPD....IK...T.VTNQLAV..L...AR..E...E.N..I.R..L....M.L..V......T...E....T.....A...A......P....S....S........L.......E....Y..I.V.DGVVTL.......QV...KEDD..R..GRTRRDLRLD.........................................................................................................
A0A0Q4BCG1_9ARCH/15-76              ..............lle---FMRAP..GGHSL.VVKGDAGTGKTT..LALQ.T.I....E..E...M..G.E..E..Q.P.D.Y.YL.S...T.R.V..S..D.EA.L.F...HQ-.............----.-.--..---...........................---.-.-.......-..-..-...-...-..-....--.....-....---........--..--..-.-..-.-....-....-...-.-.-.-.-.-.-.-...--.----...-...---.--..---...--.-.-.........---.....--..--..----....--...-.-------..-...--..-...-.-..-.-..-....-.-..-......-...-....-.....-...-......-....-....-........-.......-....-..-.-.------.......--...----..-..----------fpwyvsr..................................................................................................
M1XPG1_NATM8/23-211                 .................ISRFFGLD..KAHTL.LIKGAPGTGKTL..FTIS.S.L....D..L...L..E.R..Q..T.N.V.L.YV.S...T.R.V..D..K.NT.V.H...DMY.............FEQH.S.SI..DKT...........................HIL.D.I.......S..Q..G...A...F..E....GP.....L....DVD........VP..FE..R.M..D.L....D....S...L.L.E.W.L.T.R.V...SE.ASAQ...L...TVA.FD..SWD...LI.Y.E.........YLA.....AR..HD..DPPD....IT...A.VTTRLVT..L...AR..E...E.G..I.R..T....L.L..V......S...E....G.....S...E......L....L....S........L.......E....Y..V.V.DGVVKL.......EV...SEDE..R..GRTRRQLKLE.........................................................................................................
A0A2V3JC86_9EURY/10-196             .................ISAFFDDE..YGKIL.LVKGAPGSGKTV..FALT.L.L....S..M...L..K.G..N..G.-.-.A.YL.A...T.R.V..D..P.ET.M.Y...KQH.............PWIK.G.EI..SAA...........................NIV.D.A.......A..Q..S...-...V..R....VQ.....K....AKEf.....tiKP..LR..Y.T..D.V....P....D...F.L.K.A.I.Y.A.R...TE.SMEK...P...VII.ID..SWD...AV.V.S.........YTG.....YH..AQ..--KE....RE...E.LEHSLCD..F...CR..R...T.K..T.K..I....L.L..L......A...E....N.....T...E......Q....T....P........L.......D....Y..L.A.DGVVVL......eSV...MYDE..R..-RLRRML---lqk......................................................................................................
A0A557SVJ2_9ARCH/40-215             ...............lk----FVKN..ESYSL.LIKGKPGTGKTT..FALT.L.L....D..N...L..N.D..D..S.N.Y.F.YI.S...T.R.L..S..L.KQ.L.L...FYYp...........wVEKF.F.SK..DEN...........................KSG.Y.R.......F..E..D...-...-..-....AR.....L....D--........E-..--..-.-..-.P....E....S...L.F.E.R.I.T.N.Q...LM.DVKS...P...VII.ID..TWD...TI.A.S.........FMD.....RE..SR..--LN....N-...-.-ERVLQI..W...RE..R...A.G..A.K..L....I.F..L......S...E....T.....F...D......L....G....I........L.......D....S..I.V.DGVITL......dNIifeSTNN..R..QLTIN-----klrg.....................................................................................................
A0A4E0PZ13_9EURY/74-175             .flrmlasrikviwesg--------..-----.------------..----.-.-....-..-...-..-.-..-..-.-.-.-.--.-...-.-.-..-..-.--.-.-...---.............----.-.--..---...........................---.-.-.......-..-..-...-...-..-....--.....-....---........--..--..-.-..-.-....-....-...-.-.-.-.-.-.-.-...--.-DSK...P...MIV.VD..SID...SL.S.I.........-AT.....TR..SS..RWED....NK...FeLERLLSD..F...SR..K...V.N..A.D..L....V.L..I......T...E....Q.....T...E......V....T....S........L.......D....Y..L.V.DGVVSL.......EV...SEIS..-..----------dadvrkvqmlkl.............................................................................................
F4C0Q2_METSG/13-208                 ................v-KEFFHVD..KGQTL.LIKGMPGTGKTT..LALE.I.M....S..S...L..C.E..E..R.N.G.I.YI.S...T.R.V..D..P.AR.L.Y...ATNpwi.......ekvLMPR.N.VV..NATq.........................tKLLgS.L.......N..K..T...-...-..-....-S.....K....DLS........NY..YA..-.-..V.M....D....F...F.R.L.F.F.E.E.-...TE.EMDN...P...MII.ID..SWD...AV.L.N.........YTS.....HL..IG..--TS....QH...S.FEQNICE..F...AR..D...L.D..T.H..L....V.F..V......S...E....F.....A...D......V....M....P........L.......D....Y..I.V.DGVVTMeqfnlpgHA...GGNM..R..NRYVRQIKLE.........................................................................................................
A0A6A7LEW1_9ARCH/20-205             ..............ler----FVRR..DTYAL.LIKGKAGTGKTT..LSLT.I.L....K..T...L..G.Q..A..S.N.F.F.YI.S...T.R.V..S..P.RQ.L.F...TYYp...........wLEHFvQ.AI..KPQ...........................PTS.N.H.......E..E..Q...V...Y..K....MS.....M....FED........AR..L-..-.D..E.P....E....S...L.F.E.R.I.T.N.E...LM.DVKA...P...III.ID..SWD...AI.A.S.........FMD.....KE..AR..--LN....N-...-.-ERVLQT..W...RE..R...A.G..A.K..L....I.F..I......S...E....D.....T...S......Y....S....T........L.......D....F..L.V.DGIVEL.......DQ...STHDscR..LRQIRMI---klr......................................................................................................
A0A2V3JK38_9EURY/6-206              .................IKNFLSHE..GGSSL.IIQGNPGSGKTI..LALE.L.M....D..A...F..L.D..C..N.P.-.M.YL.T...T.R.L..T..T.DA.V.Y...RYFp..........rlRQRQ.K.EI..NVIesrdtfwd...........kffakadsNEL.R.V.......E..R..D...A...F..E....MY.....G....MLD........DPdrTD..I.A..E.F....D....R...V.C.D.R.V.D.E.-...-F.LPER...S...LLI.LD..SIE...GL.C.D.........KYK.....VS..EK..---F....--...F.VGLINRC..L...IE..P...A.H..T.K..V....V.I..V......L...E....K.....M...E......K....T....E........I.......D....Y..L.A.DGVISM.......HQ...MDR-..N..GRRMRMLSI-d........................................................................................................
T0M120_9ARCH/11-214                 ................l-DNFFSQK..FGKSL.VIKGKPGAGKTT..FALG.Y.L....E..G...I..L.G..N..T.P.V.C.YL.S...S.R.F..S..D.DS.L.F...ESFpwlkd...vsiknR---.-.--..--Eggtqsdltsvst..dslqklermieegQIS.S.S.......L..N..K...-...-..G....LI.....L....NIA........DL..L-..-.P..D.I....R....S...I.Y.E.F.V.D.A.-...-N.YGNN...P...LIV.ID..SME...AL.S.E.........---.....-K..YD..-MSS....LT...L.FSVLHSD..L...VE..K...S.R..A.N..I....I.A..I......L...E....A.....N...E......N....Q....K........L.......E....Y..F.S.DGVVSM.......DY...YVD-..-..----------adflvrratve..............................................................................................
A0A484ID77_9ARCH/42-216             ...............lk----FVKN..ESYSL.LVKGKPGTGKTT..FALT.L.L....D..N...L..H.D..D..S.N.Y.F.YI.S...T.R.L..S..L.KQ.L.T...FYYp...........wIEKF.F.SK..DEN...........................KSG.Y.R.......F..E..D...-...-..-....AR.....L....D--........E-..--..-.-..-.P....E....S...L.F.E.R.I.T.N.Q...LM.DVKS...P...VIF.ID..TWD...TI.A.S.........FMD.....KE..SR..--LN....N-...-.-ERVLQI..W...RE..R...A.G..A.K..L....I.F..L......S...E....T.....F...D......L....G....I........L.......D....S..I.S.DGVITLen...hfNK...ANNN..R..L---------lkinklr..................................................................................................
A0A1F2P6N5_9EURY/7-197              ...............ii--EFFKGE..MGKTM.LVKGEPGTGKTI..FALT.L.L....K..E...L..Y.G..S..N.N.G.I.YL.S...T.R.V..D..S.AK.L.Y...ADF.............PWIS.K.VI..PPR...........................HII.D.A.......T..Q..S...E...F..E....PI.....ArentEMD........YF..IN..T.L..K.Y....S....D...R.P.S.F.L.G.N.I...YR.MCDEyevA...VVV.ID..SWD...AV.L.Tq......tgELE.....NK..ED..----....LE...S.---LITD..I...SS..K...A.N..I.D..F....I.L..V......T...E....Y.....T...F......Q....D....K........L.......D....Y..L.V.DSVITM.......EA...KDI-..D..GRAVRILN--vn.......................................................................................................
T0LHY1_9ARCH/10-215                 .................FSEFFNQK..YGKSL.VVKGKPGSGKTT..FALE.F.T....G..M...V..Y.K..E..N.P.V.H.YL.S...S.R.F..S..D.DP.L.K...EVFgfide...vsyrsN---.-.-K..DSIefkedfskvtt....dslkklelmieeK--.R.V.......N..S..S...S...S..G....LI.....F....NIQ........EV..I-..-.P..E.I....N....A...I.Y.S.F.V.E.E.-...-N.AGTN...P...III.LD..SIE...AL.A.Q.........KYG.....ID..EG..--IL....FS...V.LQN---D..L...VE..H...S.G..V.G..L....V.V..I......L...E....N.....T...G......N....A....Q........L.......E....Y..Y.A.DGVMSLd.....yKI...MND-..-..-YLVRTMRI-ek.......................................................................................................
V4Y4N8_9ARCH/23-216                 ...............ll--RFFTQE..EGRVL.LVRGDPGAGKTL..FAVQ.A.L....N..V...L..R.R..Y.gG.D.V.L.YV.T...T.R.V..D..T.DT.V.Y...RNY.............LRGT.T.DL..ARS...........................NVL.D.V.......S..Q..D...P...F..D....AD.....I....APAd......dIG..AD..R.F..D.P....A....G...F.L.E.W.L.R.A.V...GD.VSNP...L...TVA.FD..SWE...LV.E.R.........HLL.....SQ..AS..QEDA....VEp.gE.LVTRTAT..L...AR..R...H.D..V.R..I....I.L..I......T...E....E.....A...E......Q....T....S........L.......D....Y..V.V.DGVVEL.......HA...GHST..G..GRPERELLLE.........................................................................................................
A0A2H5VCC7_9ARCH/36-217             ..............ldr---FLR-T..KPTSL.LIRGPPGSGKTT..LALE.L.L....K..A...S..N.R..A..-.-.G.Y.YI.S...T.R.V..S..L.KK.I.K...EQFpwi.......adlLKDE.Y.TV..NKD...........................YNV.N.G.......N..D..D...G...S..I....PV.....V....DAR........LG..SA..K.G..V.L....E....R...V.L.D.F.I.L.M.-...--.-HGD...S...VII.LD..SWD...AI.A.K.........---.....-E..AD..KNER....LK...-.AEKSMVY..M...SD..A...N.N..G.L..L....I.F..I......S...E....E.....P...E......E....N....T........V.......S....Y..L.V.DGVITL.......DM...EYR-..D..GFRMRKMR--fd.......................................................................................................
A0A1F2PB51_9EURY/19-198             ..........lraiekp--------..GGFSL.LLKGRPGVGKTS..LALE.L.L....R..A...V..G.G..E..-.-.G.I.YL.S...T.R.V..S..P.KA.L.Y...THF.............PWLE.E.CI..EPI...........................NII.D.T.......S..K..I...-...-..Y....VP.....T....DYT........VY..TS..A.M..T.G....T....M...T.FpE.VlA.R.R.I...SE.MGEG...V...TVV.ID..SWD...AI.K.-.........---.....LQ..CE..-PVE....MA...R.LEALVTE..L...VR..E...R.N..I.N..L....I.L..T......G...E....T.....M...D......V....T....T........L.......D....Y..L.V.DGIVVF.......N-...----..-..----------dimieyrrvreiyms..........................................................................................
A0A2K5ARS5_9ARCH/51-229             ..........frdflnm--------..EPTSM.LIRGLPGTGKTT..LALE.L.M....Q..L...M..H.D..R..Y.K.C.F.YI.S...T.R.V..S..L.AR.L.Q...RYFpwi.......igyLKDE.S.VL..SYD...........................KI-.-.-.......E..K..D...-...-..-....SV.....I....DLR........LG..SA..T.G..T.V....E....L...V.I.D.T.-.-.-.-...LI.NNKR...A...FVV.LD..SWD...AL.A.K.........--E.....IK..HE..DRMK....M-...-.-EKTMIT..V...AD..T...N.D..G.F..L....L.F..V......S...E....E.....P...E......M....N....T........L.......S....Y..L.V.DGIVTL.......SV...RDYD..D..GVSIRSMHID.........................................................................................................
A0A5B2Z181_9ARCH/40-215             ..............llq----FVKN..ESYSL.LIKGKPGTGKTT..FALT.L.L....D..N...L..K.D..D..S.N.Y.F.YI.S...T.R.L..SlkQ.LA.F.Y...FPW.............IEKF.F.SK..DDT...........................KSG.Y.R.......F..E..D...-...-..-....AR.....L....D--........E-..--..-.-..-.P....E....S...L.F.E.R.I.T.N.Q...LM.DVKS...P...VIL.ID..TWD...TI.A.S.........FMD.....RE..SR..--LN....N-...-.-ERVLQI..W...RE..R...A.G..A.K..L....I.F..L......S...E....A.....F...D......L....G....I........L.......D....S..I.V.DGVITLe.....nHI...VDST..-..--NSRK----ltinklr..................................................................................................
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