GenomeNet

Database: Pfam
Entry: LMP
LinkDB: LMP
Original site: LMP 
#=GF ID   LMP
#=GF AC   PF04778.15
#=GF DE   LMP repeated region
#=GF AU   Kerrison ND;0000-0002-1471-953X
#=GF SE   Pfam-B_2380 (release 7.6)
#=GF GA   26.00 26.00;
#=GF TC   26.80 26.10;
#=GF NC   25.90 25.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Coiled-coil
#=GF RN   [1]
#=GF RM   7543881
#=GF RT   Selection of Mycoplasma hominis PG21 deletion mutants by
#=GF RT   cultivation in the presence of monoclonal antibody 552. 
#=GF RA   Jensen LT, Ladefoged S, Birkelund S, Christiansen G; 
#=GF RL   Infect Immun 1995;63:3336-3347.
#=GF DR   INTERPRO; IPR006864;
#=GF DR   SO; 0001080; coiled_coil;
#=GF CC   This family consists of a repeated sequence element found in the
#=GF CC   LMP group of surface-located membrane proteins of Mycoplasma
#=GF CC   hominis.  The the number of repeats in the protein affects the
#=GF CC   tendency of cells to spontaneously  aggregate.  Agglutination
#=GF CC   may be an important factor in colonisation. Non-agglutinating
#=GF CC   microorganisms might easily be distributed whereas  aggregation
#=GF CC   might provide a better chance to avoid an antibody response
#=GF CC   since some of the epitopes may be buried [1].
#=GF SQ   18
#=GS A0A505IK67_9MOLU/357-519    AC A0A505IK67.1
#=GS D1J8L6_MYCHP/132-286        AC D1J8L6.1
#=GS D1J7J0_MYCHP/206-362        AC D1J7J0.1
#=GS D1J7V1_MYCHP/494-651        AC D1J7V1.1
#=GS S8C103_9LAMI/29-159         AC S8C103.1
#=GS D1J7J0_MYCHP/363-519        AC D1J7J0.1
#=GS D1J7J0_MYCHP/834-990        AC D1J7J0.1
#=GS A0A505IK76_9MOLU/1045-1207  AC A0A505IK76.1
#=GS D1J7J1_MYCHP/185-329        AC D1J7J1.1
#=GS D1J7V1_MYCHP/966-1125       AC D1J7V1.1
#=GS D1J7V1_MYCHP/809-965        AC D1J7V1.1
#=GS D1J7V1_MYCHP/652-808        AC D1J7V1.1
#=GS D1J7V1_MYCHP/337-493        AC D1J7V1.1
#=GS A0A501XCK3_9MOLU/742-845    AC A0A501XCK3.1
#=GS A0A505IK67_9MOLU/196-356    AC A0A505IK67.1
#=GS A0A4Y6I6C3_9MOLU/139-296    AC A0A4Y6I6C3.1
#=GS D1J7J0_MYCHP/677-833        AC D1J7J0.1
#=GS D1J7J0_MYCHP/520-676        AC D1J7J0.1
A0A505IK67_9MOLU/357-519               ................s-ANELSDQMS--DATIANAKEKLSNAIATAQQAYDANpkqT...NEQIERATSAINAAKQEAQTALDNLNKEKSAL.KQQIN..ANEEAIKNYI.NNTLSDP......KYAEIKKDLQAALDNFNNVQKplldNETKAKLEEIKNQLNTALEAAKEKKTEKDKE.IAGLeKAALENAI-k..............
D1J8L6_MYCHP/132-286                   ...............vm--RMLDNKLIDNDVDIQKTKKDLNSQIINALEIFNKN...N...IDEINNLNKSLTFKISEVEDILIKFKQSKEQE.FEKLQ..KTRKLVEEFLaKDVVKSD......YYANIVRNLNREVSRRGNVSI....SSNKSEIVAANINLNEVL---KQSKEFVEND.MQKL.RDSLISLI-v..............
D1J7J0_MYCHP/206-362                   .................QANQLLPQLSDNDSEIAKAKKSLDAEIKNANQAVASN...N...TASMQSAKSSLDAKVAEITKKLETFNKDKEAK.FNELK..QTRNQIQEFI.NTNKNNP......NYSELISQLTSKRDSKNSVTD....SSNKSDIESANTELKQALAKANADKVQADNL.AKSI.KEQLNNSV-s..............
D1J7V1_MYCHP/494-651                   .................KANTLLPQLNDNDSEIVKAKESLNAEITNANKAVNQN...D...NASMQSAKSSLDDKVTKIQNQLTEFNKDKDAK.FKELE..QTRKDIDNFLtDDVKNNP......NYATLVKDLTNAKDDKKSVTK....SSNKSEIIAANDELKQALDKAKVAKDQIDEA.NKSI.KEQLSDSI-t..............
S8C103_9LAMI/29-159                    .........ialsarin---------------------ALESEISQLRQQLSER...Dg.fISHLESQLESLDASVIDAEDKLAAAQQEKENL.TRENE..QLSSAVKKLN.RDVAKLE.....iFRKTLMKSLQEDEDSQVSVTN....YSSASRLIANNDD------------------.----.---------dvsnqaqlppedset
D1J7J0_MYCHP/363-519                   .................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSN...N...TASMQSAKSSLDAKVAEITKKLETFNKDKEAK.FNELK..QTRNQIQEFI.NTNKNNP......NYSELISQLTSKRDSKNSVTD....SSNKSDIESANTELKQALAKANADKVQADNL.AKSI.KEQLNNSV-s..............
D1J7J0_MYCHP/834-990                   .................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSN...N...TASMQSAKSSLDAKVAEITKKLETFNKDKEAK.FNELK..QTRNQIQEFI.NTNKNNP......NYSELISQLTSKRDSKNSVTD....SSNKSDIESANTELKQALNTAKAKKSSIDNE.LRPL.KNDLQSKIE...............
A0A505IK76_9MOLU/1045-1207             ................s-ANELSDQMS--DPVIASAKEKLSNAIATAQQAYDANpkqT...NEQIESATSAINAAKQEAQTALDNLNKEKSAL.KEQIN..ANAEDIKNYI.NNTLNNP......EYAEIKKDLQAALDNFNNVQKplldSETKAKLEQIKNQLNTALEAAKEKKTQKDKEiAGSE.KAALENAI-k..............
D1J7J1_MYCHP/185-329                   kaiidsepsknvdssre------------------------------LQIFNDS...NveaKSTLEDIDKKIDAAIRANNDLNEKIQNYKSAK.LSDLE..SSRNDLSNFI.ANDLKNP......VYKEIADKINEKIKEVKGVGK....NSTIKELQAAIKTLADAKEKAIKEKAWIDRV.----.---------gikkvleiqrs....
D1J7V1_MYCHP/966-1125                  .................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASN...N...TASMQSAKSSLDAKVTEITKKLETFNKDKDAK.FKELE..QTRKDIDEFI.KQIENDPqt..kkNYQNIVKNLKDKKAEKNSITF....SNNKKEIQDANKSLQDELNNAKITKKGITDF.YNS-.KKQLEDLIK...............
D1J7V1_MYCHP/809-965                   .................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASN...N...TASMQSAKSSLDAKVTEITKKLETFNKDKDVK.FKELE..QTRKDIDEFI.NTNKTNP......NYSTLISELTSKRDSKNSVTN....SSNKSDIETANTELKQALAKANTDKDQADNL.ARST.KEQLNKSI-s..............
D1J7V1_MYCHP/652-808                   .................NANQLLNKLVDSDKDIQKAKTELSQEIQSASQELNLN...N...PTSMQSAKESLDAKVTEITKKLETFNKDKDVK.FKELE..KTRKDIDEFI.NTNKTNP......NYSTLISELTSKRDSKNSVTN....SSNKSDIETANTELKQALAKANTDKAQADNL.AKST.KEQLNNSI-s..............
D1J7V1_MYCHP/337-493                   .................NAKEFKKLLIDNDQKIVDLKSNLDNEISKAEQSL-SK...D...KESMESANDLLNTKLIEYKEILNKFNQEKEAK.FNELE..QTRKNIENFLtDEVKNNP......NYATLVKDLTNAKDAKKSVTN....SSNKSDIIAANEALIQALADANKAKDQVDEA.NKSI.KEQLNALID...............
A0A501XCK3_9MOLU/742-845               qnkrqkfegfwtkeywn-------------------------------------...-...----------------------------KLQY.IKDLE..DKRHEADNLL.NELRENP......LYKEIYDELAAKLNKYKDVNI....SSSSDDIIEAFNEINKAINNAKIQKEIADNV.----.---------ghveqpeen......
A0A505IK67_9MOLU/196-356               ............kdlei----IKNLISSHDRALTDLKTSLVNLIQEAREILNNE...E...VSKYVSETQKINDAIAAAKKKIDEFKKSKAAEkLNHTKalQAANDLLNSL.KSYSNKE......NLGSVIEALKQAINVNSNIED....NSPLTDIEAKVNALNQAIEAANAAKAQADSE.TNEK.LAQLKSAI-d..............
A0A4Y6I6C3_9MOLU/139-296               ...tildsqlaqiakyl------------DDEYAQIKTDLIATYNQVKEILNSN...D...IQTIQQARETLEQAILKAESDKQAILNEKESQ.RNLVN..QARNTLIELI.KVVDAQIaelnaeKYNQIRHELTEANNQAKLKSD....LQDISELQAATQQLQIAINKARNDKQTKDGS.NNST.---------sn.............
D1J7J0_MYCHP/677-833                   .................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSN...N...TASMQSAKSSLDAKVAEITKKLETFNKDKEAK.FNELK..QTRNQIQEFI.NTNKNNP......NYSELISQLTSKRDSKNSVTD....SSNKSDIESANTELKQALAKANADKVQADNL.AKSI.KEQLNNSV-s..............
D1J7J0_MYCHP/520-676                   .................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSN...N...TASMQSAKSWLDAKVAEITKKLETFNKDKEAK.FNELK..QTRNQIQEFI.NTNKNNP......NYSELISQLTSKRDSKNSVTD....SSNKSDIESANTELKQALAKANADKVQADNL.AKSI.KEQLNNSV-s..............
#=GC seq_cons                          ..................ANpL.spLsDpDssItpAKpcLppElppApQulsuN...s...suohpSAcsoLDAKlsEhpccL-sFNK-K-AK.FpELc..QTRpsIpcFI.ssscsNP......NYupllcpLssccDs+sSVTc....SSNKS-IpuANspLppALspAptcKsptDsh.spSh.KppLpstl.s..............
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