#=GF ID LMP
#=GF AC PF04778.18
#=GF DE LMP repeated region
#=GF AU Kerrison ND;0000-0002-1471-953X
#=GF SE Pfam-B_2380 (release 7.6)
#=GF GA 26.00 26.00;
#=GF TC 26.10 26.10;
#=GF NC 24.40 24.90;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch --cpu 8 -E 1000 -Z 90746521 HMM pfamseq
#=GF TP Coiled-coil
#=GF RN [1]
#=GF RM 7543881
#=GF RT Selection of Mycoplasma hominis PG21 deletion mutants by
#=GF RT cultivation in the presence of monoclonal antibody 552.
#=GF RA Jensen LT, Ladefoged S, Birkelund S, Christiansen G;
#=GF RL Infect Immun 1995;63:3336-3347.
#=GF DR INTERPRO; IPR006864;
#=GF DR SO; 0001080; coiled_coil;
#=GF CC This family consists of a repeated sequence element found in the
#=GF CC LMP group of surface-located membrane proteins of Mycoplasma
#=GF CC hominis. The the number of repeats in the protein affects the
#=GF CC tendency of cells to spontaneously aggregate. Agglutination
#=GF CC may be an important factor in colonisation. Non-agglutinating
#=GF CC microorganisms might easily be distributed whereas aggregation
#=GF CC might provide a better chance to avoid an antibody response
#=GF CC since some of the epitopes may be buried [1].
#=GF SQ 17
#=GS D1J7J0_METH1/206-362 AC D1J7J0.1
#=GS S8C103_9LAMI/29-159 AC S8C103.1
#=GS A0A4V2UI99_PAULE/3-98 AC A0A4V2UI99.1
#=GS A0A8S1HBB7_9PELO/272-400 AC A0A8S1HBB7.1
#=GS A0A501XCK3_9BACT/741-845 AC A0A501XCK3.1
#=GS D1J7V1_METH1/337-493 AC D1J7V1.1
#=GS D1J7V1_METH1/494-651 AC D1J7V1.1
#=GS D1J7V1_METH1/809-965 AC D1J7V1.1
#=GS D1J7J0_METH1/520-676 AC D1J7J0.1
#=GS D1J8L6_METH1/132-286 AC D1J8L6.1
#=GS D1J7J1_METH1/181-329 AC D1J7J1.1
#=GS D1J7J0_METH1/677-833 AC D1J7J0.1
#=GS D1J7V1_METH1/966-1125 AC D1J7V1.1
#=GS D1J7J0_METH1/363-519 AC D1J7J0.1
#=GS D1J7J0_METH1/834-990 AC D1J7J0.1
#=GS D1J7V1_METH1/652-808 AC D1J7V1.1
#=GS A0A9N9BI37_9GLOM/23-147 AC A0A9N9BI37.1
D1J7J0_METH1/206-362 .....................QANQLLPQLSDNDSEIAKAKKSLDAEIKNANQAVASNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
S8C103_9LAMI/29-159 .............ialsarin---------------------ALESEISQLRQQLSERDg.fISHLESQLESLDASVIDAEDKLAAAQQEKENLTRENEQLSSAVKKLNRDVAKLEI....FRKTLMKSLQEDEDSQVSVTNYSSASRLIANNDD-------------------------------dvsnqaqlppedset
A0A4V2UI99_PAULE/3-98 ................qssei--------------------------------------...-----------------------------QQRFNHIEQTVRQMSQAC-QSSPNIP...sDLKQCITELDQQTGQAKQVIQSQNEQQIIQCVDSLEDLGDRAKAACEQAGNLNQNVRDAV-----mqahq..........
A0A8S1HBB7_9PELO/272-400 ...................ki--KTLEEQLNKNEKDLKDLQNRLDASTDRIKELE--TV...NENLQARLETSTNKLFELDEMLQIAQSSKELLMKELDQLRPLADSIGLDDVENVP....TYVEAISGLERLRDELAKVTNEA--TEVRSAFEDLQ-----------------------------avhg...........
A0A501XCK3_9BACT/741-845 ...kqnkrqkfegfwtkeywn--------------------------------------...----------------------------KLQYIKDLEDKRHEADNLL-NELRENP....LYKEIYDELAAKLNKYKDVNISSSSDDIIEAFNEINKAINNAKIQKEIADNV-------------ghveqpeen......
D1J7V1_METH1/337-493 .....................NAKEFKKLLIDNDQKIVDLKSNLDNEISKAEQSL-SKD...KESMESANDLLNTKLIEYKEILNKFNQEKEAKFNELEQTRKNIENFLTDEVKNNP....NYATLVKDLTNAKDAKKSVTNSSNKSDIIAANEALIQALADANKAKDQVDEANKSIKEQLNALID...............
D1J7V1_METH1/494-651 .....................KANTLLPQLNDNDSEIVKAKESLNAEITNANKAVNQND...NASMQSAKSSLDDKVTKIQNQLTEFNKDKDAKFKELEQTRKDIDNFLTDDVKNNP....NYATLVKDLTNAKDDKKSVTKSSNKSEIIAANDELKQALDKAKVAKDQIDEANKSIKEQLSDSI-t..............
D1J7V1_METH1/809-965 .....................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASNN...TASMQSAKSSLDAKVTEITKKLETFNKDKDVKFKELEQTRKDIDEFI-NTNKTNP....NYSTLISELTSKRDSKNSVTNSSNKSDIETANTELKQALAKANTDKDQADNLARSTKEQLNKSI-s..............
D1J7J0_METH1/520-676 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSNN...TASMQSAKSWLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
D1J8L6_METH1/132-286 ...................vm--RMLDNKLIDNDVDIQKTKKDLNSQIINALEIFNKNN...IDEINNLNKSLTFKISEVEDILIKFKQSKEQEFEKLQKTRKLVEEFLAKDVVKSD....YYANIVRNLNREVSRRGNVSISSNKSEIVAANINLNEVL---KQSKEFVENDMQKLRDSLISLI-v..............
D1J7J1_METH1/181-329 knklkaiidsepsknvdssre------------------------------LQIFNDSNveaKSTLEDIDKKIDAAIRANNDLNEKIQNYKSAKLSDLESSRNDLSNFIANDLK-NP....VYKEIADKINEKIKEVKGVGKNSTIKELQAAIKTLADAKEKAIKEKAWIDRV-------------gikkvleiqrs....
D1J7J0_METH1/677-833 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
D1J7V1_METH1/966-1125 .....................SANTLLAKLTDKDNTIQQAKTELEKEVQKANQAVASNN...TASMQSAKSSLDAKVTEITKKLETFNKDKDAKFKELEQTRKDIDEFI-KQIENDPqtkkNYQNIVKNLKDKKAEKNSITFSNNKKEIQDANKSLQDELNNAKITKKGITDFYNS-KKQLEDLIK...............
D1J7J0_METH1/363-519 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKADQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALAKANADKVQADNLAKSIKEQLNNSV-s..............
D1J7J0_METH1/834-990 .....................NANTLSAKLTDKDNTIQQAKTELEKEVQKANQAIKSNN...TASMQSAKSSLDAKVAEITKKLETFNKDKEAKFNELKQTRNQIQEFI-NTNKNNP....NYSELISQLTSKRDSKNSVTDSSNKSDIESANTELKQALNTAKAKKSSIDNELRPLKNDLQSKIE...............
D1J7V1_METH1/652-808 .....................NANQLLNKLVDSDKDIQKAKTELSQEIQSASQELNLNN...PTSMQSAKESLDAKVTEITKKLETFNKDKDVKFKELEKTRKDIDEFI-NTNKTNP....NYSTLISELTSKRDSKNSVTNSSNKSDIETANTELKQALAKANTDKAQADNLAKSTKEQLNNSI-s..............
A0A9N9BI37_9GLOM/23-147 ............ksntkeekv------QQLQRQLSQIKQALTTLNQNITQTESSLQQKR...AEQVQTPRSSLQTEINQLEQQLTTYKSQKQRLETIIPKLEQQISNFGKGENNSES....NQEQIVEQLEQEIKE--------------------------------------------------inqelgikeepekk.
#=GC seq_cons .......................ppL.tpL.DpDppItpsKppLppElppApQtltpss...ssohQSscpSLDsKlsElpcpLppFpp-K-sKFpELcQTRppIppFl.sssKsNP....NYspllspLssc+Dp+sSVTpSSNKS-I.uANs-LppALspAptsK.thDsh.psh+cpL.t.l.s..............
//
