GenomeNet

Database: Pfam
Entry: MMTV_SAg
LinkDB: MMTV_SAg
Original site: MMTV_SAg 
#=GF ID   MMTV_SAg
#=GF AC   PF01054.19
#=GF DE   Mouse mammary tumour virus superantigen
#=GF AU   Finn RD;0000-0001-8626-2148
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_518 (release 3.0)
#=GF GA   25.00 25.00;
#=GF TC   38.00 37.30;
#=GF NC   21.20 20.00;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   7612231
#=GF RT   Superantigens of mouse mammary tumor virus. 
#=GF RA   Acha-Orbea H, MacDonald HR; 
#=GF RL   Annu Rev Immunol 1995;13:459-486.
#=GF DR   INTERPRO; IPR001213;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The mouse mammary tumour virus (MMTV) is a milk-transmitted type
#=GF CC   B retrovirus.  The  superantigen (SAg) is encoded by the long 
#=GF CC   terminal repeat. The SAgs are also called PR73.
#=GF SQ   6
#=GS VIEG_SHV21/19-197    AC Q00997.1
#=GS PR73_MMTVB/52-256    AC P10260.1
#=GS G3HM08_CRIGR/44-143  AC G3HM08.1
#=GS G3HM08_CRIGR/2-48    AC G3HM08.1
#=GS PR73_MMTVC/52-256    AC P03319.3
#=GS E9M5J1_9GAMA/59-217  AC E9M5J1.1
VIEG_SHV21/19-197               ..imiwimLCLALPT--------.........DSKPISTTEAPILNITQSPSLNI-SSPSTLEPSEPLKNCTTFLD.....................LLWQRLG.ENASIKDLMLTLQREEVHGRMTTLPSPRPSSKVEEQ--QLQRPRNLLPTAVG.PPHVKYRLYNRLWEAPKGADV..NGKPI.QFDDPPLPYTGAYNDDGVLMVNINGKHVRFDSLSYWERIK...
PR73_MMTVB/52-256               ........LGIALLCLGLLGEVAvrarraltlDSFNSSSVQDYNLNDSENSTFLLRQGPQPTSSYKPHQPCPSEIEirmlaknyif.tnktnpigrlLVTMLRN.ESLPFSTIFTQIQRLE----MGIENRKRHSTSVEEQVQGLR--ASGLEVKRG.KRSALVKIGDRWWQP---GTY..RGPYIyRPTDAPLPYTGRYDLNFDRWVTVNGYKVLYRSLSFRERLA...
G3HM08_CRIGR/44-143             .....vdp---------------.........--------------------------------------------.....................-------.------------EKIKVEQLIGNEKSETKGSA-EEQLRKLAIPTRHLPGG--.--YIQYKIRDRWWAPPQWTKQ..SGNYL.----DPLPYTGGYDELGNRWVNHEGKKTTLERLAFPGKIS...
G3HM08_CRIGR/2-48               ........LNSAPPFIKAFAEVA.........SSGNKGSSLGQFLDAVEQKELLMQGDP-----VD----------.....................-------.----------------------------------------------------.---------------------..-----.----------------------------------------pek
PR73_MMTVC/52-256               ........LGIALLCLGLLGEVAvrarraltlDSFNSSSVQDYNLNNSENSTFLLRQGPQPTSSYKPHRFCPSEIEirmlaknyif.tnktnpigrlLVTMLRN.ESLSFSTIFTQIQKLE----MGIENRKRRSTSIEEQVQGLL--TTGLEVKKG.KKSVFVKIGDRWWQP---GTY..RGPYIyRPTDAPLPYTGRYDLNWDRWVTVNGYKVLYRSLPFRERLA...
E9M5J1_9GAMA/59-217             armlylsn---------------.........-----------------------------HESSDPVSNCNLSLSveeesatgpissrlkdspiktAMEKLLKiNLTKFSDFLEVLDKEEL-----YQPVATKSPTVEEY--R--AERIILKTKYTrEDELKYRIKTTTSPPPELPVWedRARYT.-----LVEWTGWYDDDGQRWVMHQGKKVLYNSLSFDLRL-q..
#=GC seq_cons                   ........Ls.A..h.................sShs.uos.s..Ls.spp.ph.h.tsP..hps.cPhp.Cs..lp.....................hh..hht.p.h.hpshh..lp+.E....hshpsptp+SoslEEQ..tL...pphL.sths...plhh+ItsRhWtP...ssh..pG.Yl.....sPLPYTGtYD.shsRWVshpGhKVhacSLuF.tRlt...
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