GenomeNet

Database: Pfam
Entry: NAD2
LinkDB: NAD2
Original site: NAD2 
#=GF ID   NAD2
#=GF AC   PF18782.4
#=GF DE   Novel AID APOBEC clade 2
#=GF AU   Iyer LM;0000-0002-4844-2022
#=GF AU   Aravind L;0000-0003-0771-253X
#=GF AU   Burroughs AM;0000-0002-2229-8771
#=GF AU   El-Gebali S;0000-0003-1378-5495
#=GF SE   Iyer LM
#=GF GA   27.00 27.00;
#=GF TC   27.00 27.00;
#=GF NC   26.90 26.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF CL   CL0109
#=GF RN   [1]
#=GF RM   29555751
#=GF RT   Diversification of AID/APOBEC-like deaminases in metazoa:
#=GF RT   multiplicity of clades  and widespread roles in immunity.
#=GF RA   Krishnan A, Iyer LM, Holland SJ, Boehm T, Aravind L;
#=GF RL   Proc Natl Acad Sci U S A. 2018;115:E3201.
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   A distnct family of AID/APOBEC deaminases found only in
#=GF CC   Amphibians [1].
#=GF SQ   331
#=GS A0A6J3HEH8_SAPAP/172-356  AC A0A6J3HEH8.1
#=GS ABC3G_PANPA/195-379       AC Q694B6.1
#=GS A0A2K5XD19_MANLE/191-377  AC A0A2K5XD19.1
#=GS A0A2K5RLG1_CEBIM/5-188    AC A0A2K5RLG1.1
#=GS A0A2K5UEB6_MACFA/204-383  AC A0A2K5UEB6.2
#=GS A0A5F4W5L7_CALJA/18-88    AC A0A5F4W5L7.1
#=GS A0A6J3HGP0_SAPAP/41-188   AC A0A6J3HGP0.1
#=GS A0A2K6MNR2_RHIBE/1-157    AC A0A2K6MNR2.1
#=GS A0A5F8A8F9_MACMU/195-378  AC A0A5F8A8F9.1
#=GS A0A2R8VHT8_MOUSE/2-60     AC A0A2R8VHT8.1
#=GS A0A5F9CNM3_RABIT/62-206   AC A0A5F9CNM3.1
#=GS A0A2R9AS24_PANPA/179-363  AC A0A2R9AS24.1
#=GS ABC3F_HUMAN/10-188        AC Q8IUX4.3
#=GS A0A2K5M2L1_CERAT/179-358  AC A0A2K5M2L1.1
#=GS ABC3C_HUMAN/10-189        AC Q9NRW3.2
#=GS ABC3C_HUMAN/10-189        DR PDB; 3VOW B; 10-189;
#=GS ABC3C_HUMAN/10-189        DR PDB; 3VOW A; 10-189;
#=GS ABC3C_HUMAN/10-189        DR PDB; 3VM8 B; 10-189;
#=GS ABC3C_HUMAN/10-189        DR PDB; 3VM8 A; 10-189;
#=GS A0A2K5RDN7_CEBIM/11-196   AC A0A2K5RDN7.1
#=GS A0A6P6ER06_OCTDE/31-204   AC A0A6P6ER06.1
#=GS A0A2K5RQ07_CEBIM/1-183    AC A0A2K5RQ07.1
#=GS G3RD21_GORGO/193-372      AC G3RD21.2
#=GS A0A2K6FDS6_PROCO/10-156   AC A0A2K6FDS6.1
#=GS A0A2K6F7G3_PROCO/11-188   AC A0A2K6F7G3.1
#=GS A0A5F4VRZ3_CALJA/11-196   AC A0A5F4VRZ3.1
#=GS A0A6P3HY01_BISBI/1-180    AC A0A6P3HY01.1
#=GS A0A2K5IBX2_COLAP/11-194   AC A0A2K5IBX2.1
#=GS A0A2K5VPC4_MACFA/26-209   AC A0A2K5VPC4.2
#=GS A0A2Y9QZB6_TRIMA/217-260  AC A0A2Y9QZB6.1
#=GS A0A2K6NY90_RHIRO/10-189   AC A0A2K6NY90.1
#=GS A0A7E6D225_9CHIR/40-218   AC A0A7E6D225.1
#=GS A0A2Y9QZH2_TRIMA/9-185    AC A0A2Y9QZH2.1
#=GS A0A5F4VRC0_CALJA/12-182   AC A0A5F4VRC0.1
#=GS A0A2K5IKK7_COLAP/215-394  AC A0A2K5IKK7.1
#=GS A0A5F4VWT3_CALJA/6-190    AC A0A5F4VWT3.1
#=GS ABC3G_MACMU/188-370       AC Q7YR23.1
#=GS A0A6J3HFV5_SAPAP/3-134    AC A0A6J3HFV5.1
#=GS A0A3Q0DM17_CARSF/260-439  AC A0A3Q0DM17.1
#=GS A0A2K6T1C9_SAIBB/195-379  AC A0A2K6T1C9.1
#=GS A0A7N9CVF4_MACFA/21-204   AC A0A7N9CVF4.1
#=GS A0A2K6DYE3_MACNE/10-210   AC A0A2K6DYE3.1
#=GS A0A5F7ZZA5_MACMU/206-389  AC A0A5F7ZZA5.1
#=GS A0A2K6D4M0_MACNE/206-389  AC A0A2K6D4M0.1
#=GS F7DDE1_HORSE/197-373      AC F7DDE1.2
#=GS A0A2I3TNB4_PANTR/10-188   AC A0A2I3TNB4.1
#=GS A0A096NK49_PAPAN/182-361  AC A0A096NK49.2
#=GS H2QLP4_PANTR/11-193       AC H2QLP4.2
#=GS A0A2K6MNQ3_RHIBE/10-176   AC A0A2K6MNQ3.1
#=GS A0A2K6KN84_RHIBE/10-189   AC A0A2K6KN84.1
#=GS A0A6P3R3D1_PTEVA/1-112    AC A0A6P3R3D1.1
#=GS A0A2K6LHM2_RHIBE/4-173    AC A0A2K6LHM2.1
#=GS A0A2K5UEL9_MACFA/21-204   AC A0A2K5UEL9.1
#=GS A0A2K6NWJ6_RHIRO/191-377  AC A0A2K6NWJ6.1
#=GS A0A2K5DHC3_AOTNA/175-342  AC A0A2K5DHC3.1
#=GS A0A2K5M2M2_CERAT/10-199   AC A0A2K5M2M2.1
#=GS A0A2K5RDN6_CEBIM/41-220   AC A0A2K5RDN6.1
#=GS A0A2R8ZET4_PANPA/10-189   AC A0A2R8ZET4.1
#=GS A0A2K6DYE3_MACNE/215-394  AC A0A2K6DYE3.1
#=GS A0A1D5QL19_MACMU/11-197   AC A0A1D5QL19.1
#=GS A0A3Q0DPF7_CARSF/190-368  AC A0A3Q0DPF7.1
#=GS A0A5F4VV51_CALJA/1-58     AC A0A5F4VV51.1
#=GS G3S1L9_GORGO/195-373      AC G3S1L9.2
#=GS A0A5F9CNM3_RABIT/232-279  AC A0A5F9CNM3.1
#=GS A0A2K5UGR0_MACFA/10-188   AC A0A2K5UGR0.2
#=GS A0A5F4WMT8_CALJA/24-168   AC A0A5F4WMT8.1
#=GS A0A671DSA2_RHIFE/159-242  AC A0A671DSA2.1
#=GS A0A5F4W035_CALJA/10-191   AC A0A5F4W035.1
#=GS A0A3Q0DNJ5_CARSF/226-410  AC A0A3Q0DNJ5.1
#=GS A0A6J3HRJ7_SAPAP/184-368  AC A0A6J3HRJ7.1
#=GS H0VE76_CAVPO/31-203       AC H0VE76.2
#=GS ABC3G_HUMAN/10-193        AC Q9HC16.1
#=GS ABC3G_HUMAN/10-193        DR PDB; 2KEM A; 1-3;
#=GS A0A3Q0EHM2_CARSF/88-270   AC A0A3Q0EHM2.1
#=GS A0A2K6MS99_RHIBE/11-194   AC A0A2K6MS99.1
#=GS A0A6J3A4A4_VICPA/234-410  AC A0A6J3A4A4.1
#=GS A0A0D9R238_CHLSB/10-185   AC A0A0D9R238.1
#=GS A0A2K6EAZ7_MACNE/10-189   AC A0A2K6EAZ7.1
#=GS A0A3Q0EHM2_CARSF/401-456  AC A0A3Q0EHM2.1
#=GS A0A1D5R7Y3_MACMU/188-237  AC A0A1D5R7Y3.2
#=GS A0A096NK49_PAPAN/1-177    AC A0A096NK49.2
#=GS A0A2I3RKT3_PANTR/10-209   AC A0A2I3RKT3.1
#=GS A0A1D5R7Y3_MACMU/242-421  AC A0A1D5R7Y3.2
#=GS A0A2K6NY96_RHIRO/193-372  AC A0A2K6NY96.1
#=GS A0A2K5VPF3_MACFA/188-363  AC A0A2K5VPF3.2
#=GS A0A0D9R238_CHLSB/190-369  AC A0A0D9R238.1
#=GS A0A2K6P452_RHIRO/169-348  AC A0A2K6P452.1
#=GS A0A2K5Y5T5_MANLE/193-372  AC A0A2K5Y5T5.1
#=GS A0A3Q0DPF7_CARSF/10-185   AC A0A3Q0DPF7.1
#=GS A0A1D5Q057_MACMU/15-201   AC A0A1D5Q057.2
#=GS A0A6J3GYJ9_SAPAP/11-196   AC A0A6J3GYJ9.1
#=GS A0A2K6S9A3_SAIBB/127-311  AC A0A2K6S9A3.1
#=GS A0A2K6LHP1_RHIBE/184-367  AC A0A2K6LHP1.1
#=GS L9L1Q2_TUPCH/124-231      AC L9L1Q2.1
#=GS A0A6J3HGQ9_SAPAP/18-83    AC A0A6J3HGQ9.1
#=GS A0A2K5ISI0_COLAP/189-362  AC A0A2K5ISI0.1
#=GS A0A6J3HGP0_SAPAP/193-372  AC A0A6J3HGP0.1
#=GS A0A2I3MHS0_PAPAN/195-378  AC A0A2I3MHS0.1
#=GS A0A5F4WN42_CALJA/11-183   AC A0A5F4WN42.1
#=GS A0A6I9JTJ2_CHRAS/149-283  AC A0A6I9JTJ2.1
#=GS A0A2K5UGR0_MACFA/193-372  AC A0A2K5UGR0.2
#=GS A0A643C4K1_BALPH/154-210  AC A0A643C4K1.1
#=GS A0A3Q0EHM2_CARSF/655-837  AC A0A3Q0EHM2.1
#=GS A0A2K5I8Y1_COLAP/191-256  AC A0A2K5I8Y1.1
#=GS ABC3G_PAPAN/195-378       AC Q694B7.1
#=GS A0A2K5ISI0_COLAP/10-184   AC A0A2K5ISI0.1
#=GS A0A2K6KN73_RHIBE/182-361  AC A0A2K6KN73.1
#=GS ABC3G_PANPA/10-193        AC Q694B6.1
#=GS A0A2K5VPC4_MACFA/211-386  AC A0A2K5VPC4.2
#=GS A0A0D9R229_CHLSB/206-369  AC A0A0D9R229.1
#=GS A0A6J3HFS6_SAPAP/41-188   AC A0A6J3HFS6.1
#=GS A0A2K6NVA7_RHIRO/14-193   AC A0A2K6NVA7.1
#=GS A0A2K5IKK7_COLAP/10-210   AC A0A2K5IKK7.1
#=GS A0A5F7ZPN8_MACMU/18-201   AC A0A5F7ZPN8.1
#=GS A0A6J3A4A4_VICPA/6-184    AC A0A6J3A4A4.1
#=GS A0A2I3GJ59_NOMLE/4-187    AC A0A2I3GJ59.1
#=GS A0A2K6P452_RHIRO/10-173   AC A0A2K6P452.1
#=GS A0A2K6KQM7_RHIBE/187-366  AC A0A2K6KQM7.1
#=GS A0A2K5IJY0_COLAP/8-187    AC A0A2K5IJY0.1
#=GS L9L1Q2_TUPCH/51-121       AC L9L1Q2.1
#=GS A0A2K5DUX8_AOTNA/10-189   AC A0A2K5DUX8.1
#=GS A0A2K6NVA4_RHIRO/10-189   AC A0A2K6NVA4.1
#=GS H2QLP8_PANTR/214-393      AC H2QLP8.1
#=GS A0A2K6P461_RHIRO/173-352  AC A0A2K6P461.1
#=GS ABC3G_MACFA/10-194        AC Q694C2.1
#=GS A0A2K5C8E2_AOTNA/11-196   AC A0A2K5C8E2.1
#=GS A0A5F9DNY4_RABIT/62-240   AC A0A5F9DNY4.1
#=GS L8Y8K6_TUPCH/3-140        AC L8Y8K6.1
#=GS F7FXJ2_MACMU/10-189       AC F7FXJ2.3
#=GS A0A2Y9T113_PHYMC/31-210   AC A0A2Y9T113.1
#=GS A0A6I9JTJ2_CHRAS/2-148    AC A0A6I9JTJ2.1
#=GS A0A2K5DUY2_AOTNA/10-189   AC A0A2K5DUY2.1
#=GS A0A2K6TEK1_SAIBB/155-325  AC A0A2K6TEK1.1
#=GS H2QLP5_PANTR/284-377      AC H2QLP5.2
#=GS A0A1D5R1V9_MACMU/206-389  AC A0A1D5R1V9.2
#=GS A0A2K5KSF3_CERAT/10-189   AC A0A2K5KSF3.1
#=GS A0A6J3HEH8_SAPAP/27-170   AC A0A6J3HEH8.1
#=GS A0A2I3M1S8_PAPAN/10-194   AC A0A2I3M1S8.1
#=GS A0A7N9IBY1_MACFA/263-408  AC A0A7N9IBY1.1
#=GS A0A3Q1N939_BOVIN/1-180    AC A0A3Q1N939.1
#=GS A0A2K5DHC3_AOTNA/1-174    AC A0A2K5DHC3.1
#=GS A0A2K6NVA4_RHIRO/194-373  AC A0A2K6NVA4.1
#=GS A0A2K6DYF9_MACNE/215-394  AC A0A2K6DYF9.1
#=GS A0A7N9IBY1_MACFA/10-156   AC A0A7N9IBY1.1
#=GS A0A2I2UR32_FELCA/210-254  AC A0A2I2UR32.1
#=GS A0A2Y9QTV6_TRIMA/1-120    AC A0A2Y9QTV6.1
#=GS A0A7N9IBY1_MACFA/209-258  AC A0A7N9IBY1.1
#=GS A0A5F4VYV0_CALJA/4-161    AC A0A5F4VYV0.1
#=GS A0A7E6D225_9CHIR/378-519  AC A0A7E6D225.1
#=GS A0A6J3HFF5_SAPAP/41-220   AC A0A6J3HFF5.1
#=GS A0A2K5IKD7_COLAP/191-370  AC A0A2K5IKD7.1
#=GS A0A2K6SNJ5_SAIBB/195-379  AC A0A2K6SNJ5.1
#=GS A0A2K6DYF9_MACNE/10-210   AC A0A2K6DYF9.1
#=GS F6R1Y1_CALJA/1-183        AC F6R1Y1.3
#=GS A0A2K5IQE0_COLAP/10-188   AC A0A2K5IQE0.1
#=GS A0A2K6D4M0_MACNE/21-204   AC A0A2K6D4M0.1
#=GS H0XYD2_OTOGA/188-350      AC H0XYD2.1
#=GS A0A2K5WDM1_MACFA/21-199   AC A0A2K5WDM1.2
#=GS F7EWS7_RAT/33-212         AC F7EWS7.1
#=GS A0A2R8ZAR6_PANPA/191-377  AC A0A2R8ZAR6.1
#=GS A0A2I3TNB4_PANTR/193-372  AC A0A2I3TNB4.1
#=GS A0A2K6MNQ3_RHIBE/173-352  AC A0A2K6MNQ3.1
#=GS A0A6P6C771_PTEVA/2-132    AC A0A6P6C771.1
#=GS A0A3Q2H4B3_HORSE/197-373  AC A0A3Q2H4B3.2
#=GS ABC3C_GORGO/10-189        AC Q694B5.1
#=GS A0A7N9CVF4_MACFA/206-388  AC A0A7N9CVF4.1
#=GS A0A6J3JPZ6_SAPAP/126-310  AC A0A6J3JPZ6.1
#=GS A0A2K6NWK2_RHIRO/1-182    AC A0A2K6NWK2.1
#=GS A0A2I3GCB3_NOMLE/269-364  AC A0A2I3GCB3.1
#=GS A0A2K5DJU6_AOTNA/10-193   AC A0A2K5DJU6.1
#=GS A0A2Y9QZ31_TRIMA/114-296  AC A0A2Y9QZ31.1
#=GS A0A6J3HZ62_SAPAP/2-166    AC A0A6J3HZ62.1
#=GS A0A5F8A8F9_MACMU/10-193   AC A0A5F8A8F9.1
#=GS A0A6I9LLV1_PERMB/216-390  AC A0A6I9LLV1.1
#=GS A0A2K6LHN7_RHIBE/160-343  AC A0A2K6LHN7.1
#=GS A0A2Y9QZB6_TRIMA/1-124    AC A0A2Y9QZB6.1
#=GS A0A2K6T1C9_SAIBB/10-193   AC A0A2K6T1C9.1
#=GS A0A6I9LLV1_PERMB/33-211   AC A0A6I9LLV1.1
#=GS A0A2K5QTJ9_CEBIM/10-193   AC A0A2K5QTJ9.1
#=GS A0A2K5DJU6_AOTNA/195-370  AC A0A2K5DJU6.1
#=GS A0A3Q0DNJ5_CARSF/11-195   AC A0A3Q0DNJ5.1
#=GS F7CUA6_CALJA/203-387      AC F7CUA6.3
#=GS A0A7N9IDN2_MACFA/21-204   AC A0A7N9IDN2.1
#=GS A0A2R8VKS7_MOUSE/2-97     AC A0A2R8VKS7.1
#=GS H2QLP5_PANTR/191-250      AC H2QLP5.2
#=GS L9KTG4_TUPCH/2-179        AC L9KTG4.1
#=GS A0A2K5RLG1_CEBIM/190-358  AC A0A2K5RLG1.1
#=GS A0A2K6MSA4_RHIBE/10-189   AC A0A2K6MSA4.1
#=GS A0A2K6NWJ4_RHIRO/11-194   AC A0A2K6NWJ4.1
#=GS A0A2K5RQ07_CEBIM/185-369  AC A0A2K5RQ07.1
#=GS A0A2K6U030_SAIBB/11-195   AC A0A2K6U030.1
#=GS A0A2K5RPZ9_CEBIM/185-338  AC A0A2K5RPZ9.1
#=GS A0A2K6KQM7_RHIBE/10-182   AC A0A2K6KQM7.1
#=GS A0A2K5E157_AOTNA/195-379  AC A0A2K5E157.1
#=GS A0A6J3JPZ6_SAPAP/1-124    AC A0A6J3JPZ6.1
#=GS A0A2K5IKD7_COLAP/7-186    AC A0A2K5IKD7.1
#=GS A0A2K5KSF0_CERAT/3-186    AC A0A2K5KSF0.1
#=GS A0A2K5IQE0_COLAP/193-372  AC A0A2K5IQE0.1
#=GS A0A2I3SZP2_PANTR/191-250  AC A0A2I3SZP2.1
#=GS A0A6J3HFS6_SAPAP/188-356  AC A0A6J3HFS6.1
#=GS A0A671DS86_RHIFE/23-197   AC A0A671DS86.1
#=GS A0A2K5M2M4_CERAT/13-192   AC A0A2K5M2M4.1
#=GS A0A096NK45_PAPAN/10-189   AC A0A096NK45.2
#=GS A0A2K6UMX1_SAIBB/1-119    AC A0A2K6UMX1.1
#=GS A0A2K5RK66_CEBIM/10-179   AC A0A2K5RK66.1
#=GS A0A2K5TZ28_MACFA/194-373  AC A0A2K5TZ28.2
#=GS A0A2K6P461_RHIRO/10-180   AC A0A2K6P461.1
#=GS A0A6J3HG50_SAPAP/3-134    AC A0A6J3HG50.1
#=GS A0A2K5UEB6_MACFA/21-199   AC A0A2K5UEB6.2
#=GS A0A2I3GCB3_NOMLE/206-270  AC A0A2I3GCB3.1
#=GS A0A2K5E157_AOTNA/10-193   AC A0A2K5E157.1
#=GS A0A2K5KS89_CERAT/21-204   AC A0A2K5KS89.1
#=GS A0A485NC94_LYNPA/2-59     AC A0A485NC94.1
#=GS H2P4E9_PONAB/24-205       AC H2P4E9.2
#=GS ABC3D_HUMAN/10-201        AC Q96AK3.1
#=GS A0A6J3HRJ7_SAPAP/1-182    AC A0A6J3HRJ7.1
#=GS A0A2K6NWK4_RHIRO/3-189    AC A0A2K6NWK4.1
#=GS A0A0D9R289_CHLSB/10-189   AC A0A0D9R289.1
#=GS A0A2K5KSE0_CERAT/11-197   AC A0A2K5KSE0.1
#=GS A0A2R8ZET4_PANPA/191-377  AC A0A2R8ZET4.1
#=GS L8IDY4_9CETA/11-192       AC L8IDY4.1
#=GS A0A2K6LHS3_RHIBE/167-350  AC A0A2K6LHS3.1
#=GS A0A5F8AQN0_MACMU/199-382  AC A0A5F8AQN0.1
#=GS A0A2R8ZYD2_PANPA/2-136    AC A0A2R8ZYD2.1
#=GS A0A5F8AQN0_MACMU/14-197   AC A0A5F8AQN0.1
#=GS A0A2K6MSA9_RHIBE/1-182    AC A0A2K6MSA9.1
#=GS A0A2K6NWK4_RHIRO/191-374  AC A0A2K6NWK4.1
#=GS A0A2R9AS24_PANPA/29-177   AC A0A2R9AS24.1
#=GS A0A2K5RQ12_CEBIM/7-191    AC A0A2K5RQ12.1
#=GS H3BKS1_MOUSE/1-85         AC H3BKS1.1
#=GS A0A2K5XQK6_MANLE/195-378  AC A0A2K5XQK6.1
#=GS A0A5F5XZ01_FELCA/210-254  AC A0A5F5XZ01.1
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A0A5F4VWM6_CALJA/1-54                ........................................................--MDPDTFTYNFTN......DPS.......V...LG...R.....H......QTYLCYEVEHLH...SGTW.vPLHQHRGF----...........-.............----...---...--..-..---.-............-----...........-......-..-....-......-.....-....-.----..---.....-----....--------.--.-....-.--....-.-.---------.........-..--....--.-......-......-.-.......-----..-.-.-.....-.....----.-.-.--..-...........-----------..............-......-..-....-........---.-..............--...--...--...-------------psacswats.......................................
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#=GC SS_cons                         ........................................................S-EEHHHHHHHC--......SSS.......T...TT...-.....-......EEEEEEEEEEEC...TTCE..-EEEEEEEEEEE...........TT...........SSGCC...SHH...HH..H..HHH.H............HHHTS...........S......T..T....S......E.....E....E.EEEE..EEE.....---HH....HHHHHHHH.HH.H....-.TT....E.E.EEEEEEE-T.........T..TT....CH.H......H......C.C.......HHHHH..H.H.C.....T.....-EEE.E.-.-H..H...........HHHHHHHHHEE..............-......T..T....-........---.-..............-T...TH...HH...HHHHHHHHHHHHTHC..............................................
#=GC seq_cons                        .........................................................hM..tTFhhpFpN......t.h.......h....G...R.....p......poaLCacVchhc...sso....hs.ppGhhpsp...........s...............tp...HAE...hC..F..Lsh.h............st.pL...........s......s..s....p......p.....Y....p.VTWa..lSW.....SPC.s....CAtcVAcF.Lu.c....p.sp....V.s.LsIFsARlY.............a....ps.p......Y......p.c.......uLRpL..p.p.t.....G.....Aplp.I.M.sY..p...........EFpaCW-sFV...............p......p..G....p........PFp.P..............Wc...sL...cc...p.thLptpLptIL................................................
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