#=GF ID PAS_4
#=GF AC PF08448.13
#=GF DE PAS fold
#=GF AU Bateman A;0000-0002-6982-4660
#=GF SE Pfam-B_493 (Release 18.0)
#=GF GA 23.10 23.10;
#=GF TC 23.10 23.10;
#=GF NC 23.00 23.00;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Domain
#=GF WK PAS domain
#=GF CL CL0183
#=GF RN [1]
#=GF RM 9301332
#=GF RT PAS domain S-boxes in archaea, bacteria and sensors for oxygen
#=GF RT and redox.
#=GF RA Zhulin IB, Taylor BL, Dixon R;
#=GF RL Trends Biochem Sci 1997;22:331-333.
#=GF RN [2]
#=GF RM 7756254
#=GF RT 1.4 A structure of photoactive yellow protein, a cytosolic
#=GF RT photoreceptor: unusual fold, active site, and chromophore.
#=GF RA Borgstahl GE, Williams DR, Getzoff ED;
#=GF RL Biochemistry 1995;34:6278-6287.
#=GF RN [3]
#=GF RM 9382818
#=GF RT PAS: a multifunctional domain family comes to light.
#=GF RA Ponting CP, Aravind L;
#=GF RL Curr Biol 1997;7:674-677.
#=GF RN [4]
#=GF RM 15009198
#=GF RT The PAS fold: a redefination of the PAS domain based upon
#=GF RT structural prediction.
#=GF RA Hefti MH, Francoijs KJ, de Vries SC, Dixon R, Vervoort J;
#=GF RL Eur J Biochem 2004;271:1198-1208.
#=GF DR INTERPRO; IPR013656;
#=GF DR SCOP; 2phy; fa;
#=GF DR SMART; PAS;
#=GF DR HOMSTRAD; PAS;
#=GF DR SO; 0000417; polypeptide_domain;
#=GF CC The PAS fold corresponds to the structural domain that has
#=GF CC previously been defined as PAS and PAC motifs [4]. The PAS fold
#=GF CC appears in archaea, eubacteria and eukarya. This domain is
#=GF CC associated to signalling systems and works as a signal sensor
#=GF CC domain. It recognises differently substituted aromatic
#=GF CC hydrocarbons, oxygen, different dodecanoic acids, autoinducers,
#=GF CC 3,5-dimethyl-pyrazin-2-ol and N-alanyl-aminoacetone (Matilla et.
#=GF CC al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1.
#=GF CC https://doi.org/10.1093/femsre/fuab043).
#=GF SQ 58162
#=GS A0A1I5U8V0_9RHOB/521-634 AC A0A1I5U8V0.1
#=GS A0A0G3EDW6_9BACT/826-932 AC A0A0G3EDW6.1
#=GS A0A0G2ZG51_9DELT/95-216 AC A0A0G2ZG51.1
#=GS A0A171BW16_9ACTN/19-132 AC A0A171BW16.1
#=GS A0A495PIJ7_9FLAO/161-268 AC A0A495PIJ7.1
#=GS A0A4R1QRE3_9FIRM/137-247 AC A0A4R1QRE3.1
#=GS S4A427_9ACTN/169-276 AC S4A427.1
#=GS E1TDT4_BURSG/48-160 AC E1TDT4.1
#=GS L0DJU7_SINAD/256-364 AC L0DJU7.1
#=GS A0A0G3BLW1_9BURK/32-144 AC A0A0G3BLW1.1
#=GS A0A1U7EUM9_NATPD/160-270 AC A0A1U7EUM9.1
#=GS A0A6L5K014_RHOTE/603-718 AC A0A6L5K014.1
#=GS A0A0Q7T6N2_9CAUL/22-132 AC A0A0Q7T6N2.1
#=GS A0A1H0SAW0_9BURK/308-419 AC A0A1H0SAW0.1
#=GS E1QMG6_DESB2/155-269 AC E1QMG6.1
#=GS A0A2S2CRS3_9PROT/153-266 AC A0A2S2CRS3.1
#=GS A0A0M8VYM4_9ACTN/120-230 AC A0A0M8VYM4.1
#=GS A0A1I2M719_9GAMM/190-306 AC A0A1I2M719.1
#=GS A0A4R5DSM6_9BACT/689-799 AC A0A4R5DSM6.1
#=GS Q8Y2Z0_RALSO/112-225 AC Q8Y2Z0.1
#=GS A0A5A9X6M4_9DELT/9-123 AC A0A5A9X6M4.1
#=GS A0A1S9AJF7_9BURK/353-452 AC A0A1S9AJF7.1
#=GS Q2FM18_METHJ/156-266 AC Q2FM18.1
#=GS R4LH61_9ACTN/360-468 AC R4LH61.1
#=GS A0A3G3JXB7_9BACL/60-170 AC A0A3G3JXB7.1
#=GS A0A4Q5IZJ0_9ACTN/43-154 AC A0A4Q5IZJ0.1
#=GS M5RBR7_9BACT/140-251 AC M5RBR7.1
#=GS G4E2H1_9GAMM/875-998 AC G4E2H1.1
#=GS A0A5B9E3L7_9BACT/64-176 AC A0A5B9E3L7.1
#=GS A0A1W1Y0M8_9NEIS/631-740 AC A0A1W1Y0M8.1
#=GS A0A4P8IU66_9BURK/146-255 AC A0A4P8IU66.1
#=GS A0A1I6S913_9BACI/134-242 AC A0A1I6S913.1
#=GS A0A1A9EZQ0_9GAMM/386-490 AC A0A1A9EZQ0.1
#=GS A0A4U1GXY9_9DELT/22-140 AC A0A4U1GXY9.1
#=GS Q828C8_STRAW/36-147 AC Q828C8.1
#=GS T0IDU1_9SPHN/182-297 AC T0IDU1.1
#=GS A0A243W5X6_9BACT/501-614 AC A0A243W5X6.1
#=GS A0A2T5C7I4_9DELT/65-171 AC A0A2T5C7I4.1
#=GS A0A498GAH4_9EURY/152-265 AC A0A498GAH4.1
#=GS A0A6P1IX84_9BURK/455-556 AC A0A6P1IX84.1
#=GS A0A1A8XHF2_9PROT/76-186 AC A0A1A8XHF2.1
#=GS R5JG08_9BACE/176-287 AC R5JG08.1
#=GS A0A2A2I412_9ALTE/529-637 AC A0A2A2I412.1
#=GS A0A4E0Q1G9_9EURY/304-415 AC A0A4E0Q1G9.1
#=GS A0A6P1SW27_9RHOB/161-266 AC A0A6P1SW27.1
#=GS A0A388SBJ5_9BURK/314-426 AC A0A388SBJ5.1
#=GS A6G6B7_9DELT/1516-1623 AC A6G6B7.1
#=GS A0A1I5BQ03_9CLOT/156-267 AC A0A1I5BQ03.1
#=GS A0A0M9ZSL0_9ACTN/169-276 AC A0A0M9ZSL0.1
#=GS A0A4V3EJF4_9ACTN/49-164 AC A0A4V3EJF4.1
#=GS A0A7E6DAH8_9CHIR/276-371 AC A0A7E6DAH8.1
#=GS B8IQ43_METNO/451-554 AC B8IQ43.1
#=GS A0A410UVK8_9BURK/219-333 AC A0A410UVK8.1
#=GS A0A0T7BVG3_9CYAN/1295-1410 AC A0A0T7BVG3.1
#=GS Q11KQ5_CHESB/409-523 AC Q11KQ5.1
#=GS H1Z1T3_9EURY/77-182 AC H1Z1T3.1
#=GS G7QD85_9DELT/179-285 AC G7QD85.1
#=GS A0A239DZJ8_9SPHN/230-344 AC A0A239DZJ8.1
#=GS T2GEI5_DESGG/931-1041 AC T2GEI5.1
#=GS A0A1Y6D9R5_9GAMM/14-117 AC A0A1Y6D9R5.1
#=GS C6BRW7_DESAD/490-601 AC C6BRW7.1
#=GS A0A4V2JD53_9RHIZ/18-129 AC A0A4V2JD53.1
#=GS A0A024HGY7_PSEKB/330-439 AC A0A024HGY7.1
#=GS A0A3B7A8W0_9RHOO/277-387 AC A0A3B7A8W0.1
#=GS Q21SC4_RHOFT/379-502 AC Q21SC4.1
#=GS A0A654C3W6_9SPHN/233-347 AC A0A654C3W6.1
#=GS A9GAJ4_SORC5/46-154 AC A9GAJ4.1
#=GS A0A347ZTP4_9CHLR/217-321 AC A0A347ZTP4.1
#=GS A0A0N8PML1_9GAMM/53-160 AC A0A0N8PML1.1
#=GS A0A285U5V3_9RHIZ/671-780 AC A0A285U5V3.1
#=GS A0YZG5_LYNSP/552-666 AC A0YZG5.1
#=GS A0A561ERQ3_9ACTN/214-311 AC A0A561ERQ3.1
#=GS A0A0Q8RQ18_9BURK/624-733 AC A0A0Q8RQ18.1
#=GS A0A221P2U7_9ACTN/169-276 AC A0A221P2U7.1
#=GS Q08UW2_STIAD/295-404 AC Q08UW2.1
#=GS A0A5B2V9G8_9RHIZ/409-522 AC A0A5B2V9G8.1
#=GS E0UIS4_GLOV7/136-245 AC E0UIS4.1
#=GS A0A6G8PY50_9ACTN/29-143 AC A0A6G8PY50.1
#=GS A0A1Z3HUN0_9CYAN/285-395 AC A0A1Z3HUN0.1
#=GS A0A1V3S751_9BURK/166-274 AC A0A1V3S751.1
#=GS A0A483CVF1_9EURY/92-199 AC A0A483CVF1.1
#=GS A0A1H4YV67_9ACTN/407-515 AC A0A1H4YV67.1
#=GS A0A3R8V7D1_9PSED/178-281 AC A0A3R8V7D1.1
#=GS A0A5C4MSL2_9RHOB/450-563 AC A0A5C4MSL2.1
#=GS A0A4R4F2K4_9GAMM/285-397 AC A0A4R4F2K4.1
#=GS L7F9V9_9ACTN/115-226 AC L7F9V9.1
#=GS A0A1H8XWJ1_9PSEU/69-177 AC A0A1H8XWJ1.1
#=GS A0A561QB79_9RHIZ/42-153 AC A0A561QB79.1
#=GS A0A6L8WAB1_9PROT/334-444 AC A0A6L8WAB1.1
#=GS A0A0N1L4E6_9SPHN/325-436 AC A0A0N1L4E6.1
#=GS A0A6C2UQE7_9BACT/316-423 AC A0A6C2UQE7.1
#=GS A0A6J4YIV8_9DELT/79-190 AC A0A6J4YIV8.1
#=GS K9VE70_9CYAN/1333-1450 AC K9VE70.1
#=GS D9SHX7_GALCS/450-560 AC D9SHX7.1
#=GS A0A0M2UZ35_9BACT/711-821 AC A0A0M2UZ35.1
#=GS A0A1H8SEX4_9PSEU/33-138 AC A0A1H8SEX4.1
#=GS A0A0V2FHC3_CAUVI/167-276 AC A0A0V2FHC3.1
#=GS A0A2W1N0R0_9FLAO/404-513 AC A0A2W1N0R0.1
#=GS A0A167WIL4_9BURK/209-267 AC A0A167WIL4.1
#=GS A0A243PKK1_9SPHN/26-134 AC A0A243PKK1.1
#=GS A0A2I0CLB0_9PSED/211-271 AC A0A2I0CLB0.1
#=GS A0A1C5BYM8_9ACTN/171-287 AC A0A1C5BYM8.1
#=GS A0A6M1MMJ1_9RHOB/193-303 AC A0A6M1MMJ1.1
#=GS A0A6G8AIZ4_9BURK/29-136 AC A0A6G8AIZ4.1
#=GS A0A517TKZ1_9BACT/270-374 AC A0A517TKZ1.1
#=GS A0A2A2W4W6_9BACT/451-562 AC A0A2A2W4W6.1
#=GS A0A4U7F7X9_9EURY/680-785 AC A0A4U7F7X9.1
#=GS A0A1V2DQS6_9ALTE/145-253 AC A0A1V2DQS6.1
#=GS A0A229UMA0_9BACL/161-262 AC A0A229UMA0.1
#=GS G7WIY4_DESOD/16-114 AC G7WIY4.1
#=GS A0A5M8FSI8_9GAMM/210-318 AC A0A5M8FSI8.1
#=GS A0A0Q2SJV8_VIBFU/127-232 AC A0A0Q2SJV8.1
#=GS K9VIB7_9CYAN/992-1096 AC K9VIB7.1
#=GS A0A1I1JEE6_9ACTN/172-283 AC A0A1I1JEE6.1
#=GS E3FQ87_STIAD/326-437 AC E3FQ87.1
#=GS A0A1A7QL99_9SPHN/299-411 AC A0A1A7QL99.1
#=GS A0A2T5PBZ2_9PSED/408-523 AC A0A2T5PBZ2.1
#=GS A0A399D916_9BACT/538-650 AC A0A399D916.1
#=GS A0A1I1ZJE5_9ACTN/15-126 AC A0A1I1ZJE5.1
#=GS M3BP98_STRMB/25-135 AC M3BP98.1
#=GS A0A1X7FPE9_TRICW/24-135 AC A0A1X7FPE9.1
#=GS A0A1J1LFC9_9CYAN/1524-1629 AC A0A1J1LFC9.1
#=GS A0A1H7PBT2_9ACTN/27-141 AC A0A1H7PBT2.1
#=GS A0A221P3F7_9ACTN/221-319 AC A0A221P3F7.1
#=GS A0A1G6BNJ1_9DELT/518-625 AC A0A1G6BNJ1.1
#=GS A0A1U9NNM3_9BACT/256-362 AC A0A1U9NNM3.1
#=GS A0A0W8EME0_9BACT/127-242 AC A0A0W8EME0.1
#=GS A0A173KW92_9SPHN/312-423 AC A0A173KW92.1
#=GS A0A1I4IUJ9_9FIRM/151-263 AC A0A1I4IUJ9.1
#=GS A0A1G6XG88_9BURK/207-322 AC A0A1G6XG88.1
#=GS A0A0X8GQV6_9BURK/179-290 AC A0A0X8GQV6.1
#=GS A0A0M6XSC3_9RHOB/266-372 AC A0A0M6XSC3.1
#=GS B1ZF44_METPB/429-538 AC B1ZF44.1
#=GS A0A2N7UDU6_9GAMM/291-402 AC A0A2N7UDU6.1
#=GS A0A395LHA1_9SPHN/17-132 AC A0A395LHA1.1
#=GS A0A2R4XGJ3_9BURK/116-227 AC A0A2R4XGJ3.1
#=GS A0A1H9W1B4_9ACTN/138-247 AC A0A1H9W1B4.1
#=GS A0A4R2RZE6_9FIRM/303-413 AC A0A4R2RZE6.1
#=GS K8GJJ8_9CYAN/153-256 AC K8GJJ8.1
#=GS D5WVH9_KYRT2/87-188 AC D5WVH9.1
#=GS A0A1I3K1P1_9BRAD/197-317 AC A0A1I3K1P1.1
#=GS W7SIR0_9PSEU/45-154 AC W7SIR0.1
#=GS A0A512DCW9_9CELL/313-415 AC A0A512DCW9.1
#=GS A0A2N1KIU6_9BACT/286-393 AC A0A2N1KIU6.1
#=GS K9TRR5_9CYAN/709-818 AC K9TRR5.1
#=GS A0A5C6EJH2_9BACT/79-185 AC A0A5C6EJH2.1
#=GS A0A2P7P9L3_9GAMM/28-139 AC A0A2P7P9L3.1
#=GS A0A4Q5S0F9_9SPHN/50-159 AC A0A4Q5S0F9.1
#=GS D7A2A8_STAND/5-104 AC D7A2A8.1
#=GS A0A2T1CN69_9CYAN/1012-1121 AC A0A2T1CN69.1
#=GS A0A2T6AW38_9RHOB/9-110 AC A0A2T6AW38.1
#=GS A0A368WHA1_9BURK/135-246 AC A0A368WHA1.1
#=GS A0A143G3M1_9GAMM/160-269 AC A0A143G3M1.1
#=GS A0A5B2TMF4_9PROT/166-277 AC A0A5B2TMF4.1
#=GS A0A428J4H2_9BACI/36-148 AC A0A428J4H2.1
#=GS A0A257H134_9BURK/474-586 AC A0A257H134.1
#=GS A0A292EEW1_9RHIZ/30-134 AC A0A292EEW1.1
#=GS A0A5P0YWR6_9ACTN/233-330 AC A0A5P0YWR6.1
#=GS A0A1Y2JZE3_9PROT/451-560 AC A0A1Y2JZE3.1
#=GS A0A1M6ZMJ5_9ACTN/18-129 AC A0A1M6ZMJ5.1
#=GS A0A2N5IKZ0_9RHOB/141-251 AC A0A2N5IKZ0.1
#=GS A0A5R9QBL9_9PSED/16-138 AC A0A5R9QBL9.1
#=GS A0A4Z1BXW8_9RHOB/166-276 AC A0A4Z1BXW8.1
#=GS A0A1H0GJ79_9RHIZ/349-458 AC A0A1H0GJ79.1
#=GS W9E015_METTI/567-678 AC W9E015.1
#=GS A0A0R2K393_9LACO/8-120 AC A0A0R2K393.1
#=GS A0A257GII9_9RHOB/169-284 AC A0A257GII9.1
#=GS A0A0W8EER3_9BACT/305-420 AC A0A0W8EER3.1
#=GS A0A6G3ZIR1_9EURY/183-309 AC A0A6G3ZIR1.1
#=GS A0A4P6PGT1_9BACT/24-135 AC A0A4P6PGT1.1
#=GS A0A2V2N2I8_9EURY/488-593 AC A0A2V2N2I8.1
#=GS A0A223V9Q6_9FLAO/8-115 AC A0A223V9Q6.1
#=GS A0A1L9NWQ5_9RHOB/183-287 AC A0A1L9NWQ5.1
#=GS A0A0V7ZRX3_9CYAN/1520-1637 AC A0A0V7ZRX3.1
#=GS J8VCT9_PSEPU/31-140 AC J8VCT9.1
#=GS A0A2W4D3K5_9RHIZ/137-250 AC A0A2W4D3K5.1
#=GS A0A5J4KN22_9CHLR/402-526 AC A0A5J4KN22.1
#=GS A0A1I0DTJ8_9BACT/93-207 AC A0A1I0DTJ8.1
#=GS A0A2T6AUG1_9RHOB/1224-1339 AC A0A2T6AUG1.1
#=GS A0A519ZLF0_9BURK/56-168 AC A0A519ZLF0.1
#=GS A0A0L0JKQ6_9ACTN/310-419 AC A0A0L0JKQ6.1
#=GS B1ZR02_OPITP/33-142 AC B1ZR02.1
#=GS A0A3G2LBB1_9FLAO/10-119 AC A0A3G2LBB1.1
#=GS A0A1V1W5C0_9ACTN/8-106 AC A0A1V1W5C0.1
#=GS A0A1G7YMF4_9PROT/21-122 AC A0A1G7YMF4.1
#=GS A0A1P8FQN9_9PROT/118-227 AC A0A1P8FQN9.1
#=GS A9G507_SORC5/52-167 AC A9G507.1
#=GS A0A514JXC0_9ACTN/33-144 AC A0A514JXC0.1
#=GS H6NJK2_9BACL/265-374 AC H6NJK2.1
#=GS A0A2S5T5T9_9BURK/179-291 AC A0A2S5T5T9.1
#=GS F4QND3_9CAUL/159-273 AC F4QND3.1
#=GS A0A1B9GNU0_9TREE/1218-1326 AC A0A1B9GNU0.1
#=GS A0A517ZV62_9PLAN/398-507 AC A0A517ZV62.1
#=GS A0A2H5X9W6_9BACT/127-245 AC A0A2H5X9W6.1
#=GS A0A4Q2TYQ0_9RHIZ/187-303 AC A0A4Q2TYQ0.1
#=GS A0A519LRN8_9BURK/231-336 AC A0A519LRN8.1
#=GS A0A523Q0X7_9BURK/172-269 AC A0A523Q0X7.1
#=GS U1P591_9EURY/244-350 AC U1P591.1
#=GS A0A3M6VI87_9STRA/2-104 AC A0A3M6VI87.1
#=GS H8Z585_9GAMM/228-339 AC H8Z585.1
#=GS A0A1E5LGB3_9BACI/133-240 AC A0A1E5LGB3.1
#=GS A0A0N0D9H1_9RHOB/276-381 AC A0A0N0D9H1.1
#=GS A0A1L9QRJ4_9CYAN/526-627 AC A0A1L9QRJ4.1
#=GS A0A4Y3VFJ2_9ACTN/45-160 AC A0A4Y3VFJ2.1
#=GS A0A081MDF7_9RHIZ/322-433 AC A0A081MDF7.1
#=GS U1ZJJ5_9BURK/302-414 AC U1ZJJ5.1
#=GS A0A6P0HDT8_9ACTN/17-134 AC A0A6P0HDT8.1
#=GS I8T906_9GAMM/203-318 AC I8T906.1
#=GS A0A4R6E2C1_9RHOO/1-119 AC A0A4R6E2C1.1
#=GS A0A6I4HY44_9SPHI/19-129 AC A0A6I4HY44.1
#=GS A0A1G7H7D3_9SPHI/148-260 AC A0A1G7H7D3.1
#=GS A0A0T2QEG4_9SPHN/174-286 AC A0A0T2QEG4.1
#=GS A0A2S4XIT2_9ACTN/169-276 AC A0A2S4XIT2.1
#=GS U9VX81_9CYAN/22-129 AC U9VX81.1
#=GS A0A7D3WN46_9BACT/11-135 AC A0A7D3WN46.1
#=GS A0A2S6NIV4_RHOGL/91-192 AC A0A2S6NIV4.1
#=GS C6C1H9_DESAD/345-453 AC C6C1H9.1
#=GS U5NA86_9BURK/303-412 AC U5NA86.1
#=GS D8JAI6_HALJB/687-797 AC D8JAI6.1
#=GS A0A0N0NBY4_9ACTN/193-286 AC A0A0N0NBY4.1
#=GS A0A4R9EIC9_9ACTN/63-174 AC A0A4R9EIC9.1
#=GS A0A5N8VGV8_9ACTN/62-172 AC A0A5N8VGV8.1
#=GS A0A1H2FL41_9BACT/194-286 AC A0A1H2FL41.1
#=GS A0A329RA61_9STRA/1-55 AC A0A329RA61.1
#=GS A0A518D8R5_9BACT/89-200 AC A0A518D8R5.1
#=GS A0A2N5XI48_9ACTN/78-186 AC A0A2N5XI48.1
#=GS C7PEK8_CHIPD/403-516 AC C7PEK8.1
#=GS A0A4R6WQ86_9PROT/597-715 AC A0A4R6WQ86.1
#=GS A0A561EUY9_9ACTN/173-281 AC A0A561EUY9.1
#=GS A0A1I4U2Y6_9PSED/12-119 AC A0A1I4U2Y6.1
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#=GS Q5V4P0_HALMA/141-245 DR PDB; 3FC7 B; 144-241;
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