#=GF ID   PAS_12
#=GF AC   PF18095.4
#=GF DE   UPF0242 C-terminal PAS-like domain
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Bateman A
#=GF GA   22.60 22.60;
#=GF TC   22.60 22.70;
#=GF NC   22.50 22.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF WK   PAS domain
#=GF CL   CL0183
#=GF DR   INTERPRO; IPR040578;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain is found at the C-terminus of proteins of the
#=GF CC   UPF0242 family. This domain is related to the PAS domain
#=GF CC   Pfam:PF13426.
#=GF SQ   15
#=GS A0A090E0C4_9BACT/251-403  AC A0A090E0C4.1
#=GS A0A658S768_CHLAO/48-199   AC A0A658S768.1
#=GS A0A0U5JAE2_9BACT/289-441  AC A0A0U5JAE2.1
#=GS Q6MEU1_PARUW/282-434      AC Q6MEU1.1
#=GS A0A655N0C0_CHLTH/1-128    AC A0A655N0C0.1
#=GS Y616_CHLTR/266-417        AC O84621.1
#=GS A0A656KBN4_CHLPS/1-98     AC A0A656KBN4.1
#=GS D6YT85_WADCW/230-381      AC D6YT85.1
#=GS A0A0C1JYI3_9BACT/222-374  AC A0A0C1JYI3.1
#=GS A0A0H5DSR8_9BACT/251-402  AC A0A0H5DSR8.1
#=GS F8L247_PARAV/249-401      AC F8L247.1
#=GS A0A1T5KQ33_9BACT/12-118   AC A0A1T5KQ33.1
#=GS A0A656K946_CHLPS/1-40     AC A0A656K946.1
#=GS A0A212KW93_9CHLA/279-431  AC A0A212KW93.1
#=GS A0A1P8UIN6_9GAMM/175-288  AC A0A1P8UIN6.1
A0A090E0C4_9BACT/251-403             ......................................t-EDEAKKLLKRCLDIA.QKIT..VSH.....HFTN.E.KSRFR.DL...PF...DNHG.....L.D..LRRLCD.SLRS..ETTGAVLVYSQKENR..ILFINNQIRALLGFGPDKFV.QD.F.EN..IV.QGGL..N...E....WKSAI.AKMN..TLYE.A....EA.....SLVMKNKAGQ..DVLLRCQLGLI.PTGVFRNSAIGVFYN...............................................
A0A658S768_CHLAO/48-199              .....................................lp--KQLLSELKKIAFKM.ENIE..AAS.....SLTA.S.RYIRS.ES...SV...YNYS.....L.E..CRQLFD.NLRE..ENLGMLFVYAPQSQR..AVFANSLFKTWMGYGVEDFL.KM.D.KD..VV.ISGL..P...Q....WKADL.-RLY..DRQE.R....SG.....KIIIKTKNHG..QIPFYYCLTIL.NKGPLHNHVLGVLYP...............................................
A0A0U5JAE2_9BACT/289-441             ......................................s-IPEATILLKKCITMA.QKLT..GAN.....YYSN.E.ATRYR.EF...SS...SNYA.....I.D..QRRLFD.GLRN..EEGGLIVVYSQKEHK..LLFANHQSKALLGWSPDKFT.SD.F.SS..II.QEGL..A...D....WKRGL.NTLS..SATE.S....QI.....RLLAKNKNGQ..EILLSCHLGIV.PSGLFRNYIIGVLYP...............................................
Q6MEU1_PARUW/282-434                 ......................................t-TIEASALLKKCINMA.QKMT..GAN.....YYNN.E.TTRYR.EF...ST...SNYA.....I.D..QRRLFD.NLKN..EEGGLIVVFSQKDQK..LLFANQQSKALLGWSADKLI.SD.F.AQ..II.QEGL..N...E....WRRGL.AALT..TAAE.S....QI.....RLLAKNKNGQ..EVLLSCQLGII.PSGLFRSYVIAIFYP...............................................
A0A655N0C0_CHLTH/1-128               ......................................m----------------.----..---.....--TA.L.RYTRT.DP...SA...HNYS.....L.A..CRQLFD.GLRE..ENLGMLFIYAPFAQR..VLFANALFNDWTGYGLEDFL.NR.E.SD..VV.LEGF..A...Q....WERDL.-LTE..SRVE.R....SG.....KIVIKTKAFG..ATPFYYCVVTL.DKGPFAQHILGVLYP...............................................
Y616_CHLTR/266-417                   ......................................v-VAQLVLEFRKIVFRV.ETTE..AAD.....SLTA.L.RYTRT.DP...SA...HNYS.....L.A..CRQLFD.GLRE..ENLGMLFIYAPFAQR..VLFANALFNDWTGYGLEDFL.NR.E.SD..VV.LEGF..A...Q....WERDL.-LTE..SRVE.R....SG.....KIVIKTKAFG..ATPFYYCVVTL.DKGPFAQHILGVLYP...............................................
A0A656KBN4_CHLPS/1-98                .....................................mp--KQLLSELKKIAFKM.ENIE..VAS.....SLTA.S.RYIRS.ES...SV...HNYS.....L.E..CRQLFD.SLRE..ENLGMLFVYTPQSQR..AVFANSLFKTWTGYGVEDFL.KM.D.ED..VV.VSG-..-...-....-----.----..----.-....--.....----------..-----------.---------------...............................................
D6YT85_WADCW/230-381                 ......................................s-PEEASVLLGRCINIA.QKIT..TSN.....RF-N.S.NSRFH.HM...PL...DSSA.....L.D..FRRLYD.SLRS..ETSSGIIVYSLKENR..LIFANDQIEMIMGWNSETFT.RN.F.SE..II.REGY..E...E....WNAAL.GQLS..PHTE.S....KA.....RMLFKTKNGQ..NILINCHLKII.PTGIFRHYVIGTLYP...............................................
A0A0C1JYI3_9BACT/222-374             .....................................ns--MQANIQLKRCIDIA.QKIT..GAS.....HYYN.T.SSRFK.DL...AV...DNYT.....L.D..LRRLFD.SLRA..ENASAIIFYSQKENK..ILFVNNQSRSLLGWSPDKFV.QS.F.NE..IV.EPSK..D...I....WRQGI.ASLA..IKND.N....HI.....SLKMKSKAGA..QVEVHALLGII.PTGIFRYHVLGILY-s..............................................
A0A0H5DSR8_9BACT/251-402             .....................................nl--EDAKKQLRRCLDIA.QKIT..GSH.....YIRG.Q.AARFR.DM...A-...DHYA.....L.D..LRRLCD.SLRS..ENGAAVIVYSPRENR..LLFINNHVKTILGYSPEKFV.QD.F.ES..IV.QEGM..G...D....WKKVV.GQLS..TLHE.A....KT.....SLVMKNKNNE..DVVVQCLLGMI.PTGVFKSHVMGVLY-h..............................................
F8L247_PARAV/249-401                 ......................................h-AEGASHQLKQCIEIV.QNIT..GVN.....HFSS.Q.SSLFR.DL...PV...NSNA.....L.D..LRRLGD.SLGS..ENMAALAVYSKKEHK..LLYANHQIRHLLGWSSDKFL.QD.F.PE..IV.QDGL..A...E....WKTQI.QGLS..SSHE.A....KI.....RLVMKTKFGE..NLLLNCHLGLI.PSGIFCNHVIAVFYP...............................................
A0A1T5KQ33_9BACT/12-118              ...............................kdigdisv----------------.----..---.....----.-.-----.--...--...----.....-.-..------.----..---DGIFVYSLHENK..VTYCNHMLSEIFGTTMENII.DR.P.IE..VL.KEAL..N...YdsnyLEEIL.QQLQ..SKYTlS....NV.....QMLI-NAAGK..SKYLTADIYYI.---------------edsgvvmsiikdi..................................
A0A656K946_CHLPS/1-40                .......................................----------------.----..---.....----.-.-----.--...--...----.....-.-..------.----..---------------..--------------------.--.-.--..--.----..-...-....-----.----..---E.R....SG.....KIIIKTKNHG..QIPFYYCLTVL.NKGPLHNHVLGVLYP...............................................
A0A212KW93_9CHLA/279-431             ....................................spy---DASLQLEHCIELA.QNLE..GAA.....HLGV.G.SRRFG.DL...AV...ESRA.....L.D..LRRLAD.KFRS..EVSAPVLLFNPSDNH..LMFASNQIQGIVGWSPEKLV.KD.F.YQ..LL.QDGR..N...E....WDHAV.SALS..QQEQ.V....QV.....RIVVKTKSGQ..DVMTYCHLGMI.RSGIFTQHVVGVLLP...............................................
A0A1P8UIN6_9GAMM/175-288             .............................lacdvargle----------------.----..---.....----.-.-----.--...--...---I.....L.A..VRRLRD.TLLD..HTPTAITVI--RNRI..IVHANPAMGHLLGYPADHFT.GH.S.TR..LI.YAGE..A...E....YQRV-.GKAY..ATLE.S....EGqvwvhRVRARHQNGQ..DLLLELH----.---------------grrldait.......................................
#=GC seq_cons                        ......................................s...ph.h.L++hl.hs.pplp..sus......hss.p.p.php.-....us...psau.....L.-..hRRLhD.uLRs..EshuhlhVYo.+-p+..llFANsthcslhGaus-cFl.pc...pc..ll.p-Gh..s...p....Wcpsl.ttLp..sphE.s....ps.....+llhKsKsGp..slhlpspLshl.spG.FppallGVLYP...............................................
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