GenomeNet

Database: Pfam
Entry: PF18287
LinkDB: PF18287
Original site: PF18287 
#=GF ID   Hfx_Cass5
#=GF AC   PF18287.3
#=GF DE   Integron Cassette Protein Hfx_Cass5
#=GF AU   Smart A;0000-0002-6965-5633
#=GF SE   ECOD:EUF03202
#=GF GA   25.00 25.00;
#=GF TC   25.10 36.90;
#=GF NC   23.00 22.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   23349695
#=GF RT   Integron gene cassettes: a repository of novel protein folds
#=GF RT   with distinct interaction sites.
#=GF RA   Sureshan V, Deshpande CN, Boucher Y, Koenig JE, Stokes HW,
#=GF RA   Harrop SJ, Curmi PM, Mabbutt BC;
#=GF RL   PLoS One. 2013;8:e52934.
#=GF DR   INTERPRO; IPR041376;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This domain forms part of the integron cassette protein
#=GF CC   Hfx_CASS5 present in Vibrio cholerae. The structure of Hfx is a
#=GF CC   tetramer built from two domain-swapped dimers [1].
#=GF SQ   23
#=GS A0A3B0C8I8_9FLAO/1-58    AC A0A3B0C8I8.1
#=GS A6E8N2_9SPHI/2-65        AC A6E8N2.1
#=GS A0A395JEE5_9GAMM/4-83    AC A0A395JEE5.1
#=GS V5BEQ7_9GAMM/4-80        AC V5BEQ7.1
#=GS A0A1I5B3A9_9FLAO/4-80    AC A0A1I5B3A9.1
#=GS A0A4U1CBD2_9SPHI/4-80    AC A0A4U1CBD2.1
#=GS A0A2K8XAA9_9FLAO/6-82    AC A0A2K8XAA9.1
#=GS A0A495RXM8_SPHMI/4-80    AC A0A495RXM8.1
#=GS A0A4R6TGU5_9FLAO/1-53    AC A0A4R6TGU5.1
#=GS A0A3S2UMZ1_9SPHI/4-80    AC A0A3S2UMZ1.1
#=GS A0A2S4ZZF9_9SPHI/4-80    AC A0A2S4ZZF9.1
#=GS A0A4R6INF2_9SPHI/4-80    AC A0A4R6INF2.1
#=GS A0A1G7F744_9BACT/11-86   AC A0A1G7F744.1
#=GS A0A2R7JZE4_9SPHN/6-90    AC A0A2R7JZE4.1
#=GS A0A2S5TR31_9RHIZ/4-79    AC A0A2S5TR31.1
#=GS A0A4R6TEX9_9FLAO/34-110  AC A0A4R6TEX9.1
#=GS A0A2T6EAN1_9GAMM/4-83    AC A0A2T6EAN1.1
#=GS A0A369QAG6_9BACT/4-80    AC A0A369QAG6.1
#=GS A0A5C8KG37_9GAMM/4-82    AC A0A5C8KG37.1
#=GS A0A2P8C5U3_9BACT/13-89   AC A0A2P8C5U3.1
#=GS A0A5C6TRR0_9SPHN/4-80    AC A0A5C6TRR0.1
#=GS A0A4P7JPS8_9GAMM/9-80    AC A0A4P7JPS8.1
#=GS A0A0X8X2X9_9SPHI/4-79    AC A0A0X8X2X9.1
A0A3B0C8I8_9FLAO/1-58               ......................mk----------------...-----K...FTLVYRTAKQVHWNQEKQTVYSPKPTD........WTYVDWYNHILKVV.KEECF---------celyltddt...
A6E8N2_9SPHI/2-65                   ..................lvyiid----------------...---KER...FTLIYRIAIEVHWDNNVLFLYSPKPRE........WTYFNWFRHITGVA.ETGCNCKLV-----ltdqt.......
A0A395JEE5_9GAMM/4-83               eeiskieilengemfvmlasggnp----------------...-----M...YQYIYREAAEVYWDNEAKVFKAPAPRK........WTHTDWFKKIISVA.ASGLGITLELSNST............
V5BEQ7_9GAMM/4-80                   ........................DNIAIIGIDESKRLYV...TPMREE...FPYIYRAAMQVNWDDNGKCLYSPVPSE........WTYLQWFQQIIAAA.NSEYGVSLAISHGT............
A0A1I5B3A9_9FLAO/4-80               ........................DKILEIGIDDKERLFV...KPKTEI...FEFIYRDASGVNWDINGQFLYSPKPTE........MNYFDWFRQIILAT.KGEYGCELKITS--et..........
A0A4U1CBD2_9SPHI/4-80               ........................DTILEIGIDYKERLFV...IPKTEI...FEFIYRDASGVNWDINGQFLYSPKPTE........MTYFDWFRQILLAT.KGEYGCELKITS--et..........
A0A2K8XAA9_9FLAO/6-82               ........................DTIIQIEIDDSGKLHI...KPEYEK...FIMIYRTATEVHWNTENNTLYSPTPRD........RTYLEWFEQIIKVV.KEECSCDLYITE--qt..........
A0A495RXM8_SPHMI/4-80               ........................DAISEVGISEDGGLYV...RPSSTT...FEYIWRAAVEVHWDLQNRRLFGPKPRE........WTYVDWFKQIVAAV.ADEYGILLRL----tpqt........
A0A4R6TGU5_9FLAO/1-53               .......................m----------------...------...---IYRTATEVHWDPECKCLYSPRPRE........WTYYDWYKHILEVV.ENEGNY--------klkltdrt....
A0A3S2UMZ1_9SPHI/4-80               ........................DHIEAIGINEQGQLYV...KPCKKQ...FTLIWRSATQVHWNDTGSYLYSPKPTE........WSYMDWYKHIVTVI.ADEYNCKLLVV---ndt.........
A0A2S4ZZF9_9SPHI/4-80               ........................DKILEIGIDDKERLFI...KPEKER...FTLIYRTATEVHWDNNGLFLYSPKPQG........WSYFDWFRHITGVT.ETECNYKL------lltnkt......
A0A4R6INF2_9SPHI/4-80               ........................DQISEIGIDAQERLYI...KPSTAR...FDLIYRTAREVHWDANGLFLFSPKPRE........WTYLDWYIHIIEVV.SSECGYKLVLSDE-t...........
A0A1G7F744_9BACT/11-86              ........................DRIEAIGIDANGSLWV...KPATKT...FPMMYREGMEVHWDASRQCLYSPLPRE........WSYLQWFCQINRAA.-AEQGVALVVD---sqt.........
A0A2R7JZE4_9SPHN/6-90               ......................ev--IAEIGISEDGGLYV...RPTTTG...FNYIYRAAMQIGWDANQRHLTSPAPKNaafpnwhtWTYSDWLRQILAAV.NDEYGIALV-----qtptt.......
A0A2S5TR31_9RHIZ/4-79               ........................DTIEAVGIDDRGSLWV...KPTTAT...FPFIYREAMEVRWDADRLRLYGPKPRE........WPYVAWFKQIRVAA.-REHGVELKL----gptt........
A0A4R6TEX9_9FLAO/34-110             ........................DKIKRVEIDEIGQLLI...FPETLK...FPMVYRTATEVHWDPECKCLYSPRPSE........WTYFDWYNHILEVV.QNEGN---------yklkltdrt...
A0A2T6EAN1_9GAMM/4-83               .....................eei---SKIEILENGEMYLvlsSGGKEE...YHNIYREAAEVYWDRERKAFKAPTPRK........WSHVDWYKHIVSVA.ASGLRLSLQVSDNT............
A0A369QAG6_9BACT/4-80               ........................DNIQEIGINQNGQLFI...KPDKRK...FPLIYRTATEVHWDSNKNILYSPKPRE........WTYLDWFRHIITTL.ETECDCKLQIT---pet.........
A0A5C8KG37_9GAMM/4-82               ......................vg--ITRIAIDDQQRLCV...FPAEANpslYTFVYRAGAEITWDTGG-YFCSPPPRE........WSYTRWLEQLISAV.RGELGLELTL----lpnt........
A0A2P8C5U3_9BACT/13-89              ........................DNIKSIEIDREGKLHV...VTDMTT...YPMIYRTATEVHWDVDKHSLYSPKPRE........WSYIKWYNHILDVC.ETECSCRLL-----ltaet.......
A0A5C6TRR0_9SPHN/4-80               ......................eq--IIEIRIDNQKRLLV...RPSEAK...FDKIYRAALGVQWDPEARALTSPVPRE........WGYLHWFQQILGAA.ADEYGVELTL----vpdt........
A0A4P7JPS8_9GAMM/9-80               ......ilengqlilvlasggsps----------------...------...YEHIYREAAEVKWDTNLKAFTSPPPRE........WSHSDWFHHIVKVAkNCSINLS-------lnset.......
A0A0X8X2X9_9SPHI/4-79               ........................DHIKEIKIDESGRLCI...FPEKER...FSMIWRSATEVHWDDKGLFLFSPKPRE........WSYFDWYKHIIKVV.Q-------------eanchlvitdkt
#=GC seq_cons                       ........................DtI.pItIspptpLal...hPpppp...FshIYRsAsEV+WDsssphLYSP+PRE........WoYhDWa+pIlpss.psEhshpLhl................
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