GenomeNet

Database: Pfam
Entry: Papilloma_E5
LinkDB: Papilloma_E5
Original site: Papilloma_E5 
#=GF ID   Papilloma_E5
#=GF AC   PF03025.17
#=GF DE   Papillomavirus E5
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   Pfam-B_1916 (release 6.4)
#=GF GA   25.00 25.00;
#=GF TC   42.60 42.30;
#=GF NC   21.10 19.90;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR004270;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   The E5 protein from papillomaviruses is about 80 amino acids
#=GF CC   long.  The proteins are contain three regions that are predicted
#=GF CC   to be transmembrane alpha helices.  The function of this protein
#=GF CC   is unknown.
#=GF SQ   17
#=GS A0A166MBV3_9PAPI/11-83  AC A0A166MBV3.1
#=GS VE5_HPV16/11-83         AC P06927.2
#=GS A0A0P0ERX0_HPV73/2-74   AC A0A0P0ERX0.1
#=GS A0A0P0F0K8_HPV34/2-74   AC A0A0P0F0K8.1
#=GS C3PUA1_RHPV1/7-79       AC C3PUA1.1
#=GS T2A5P3_HPV68/2-73       AC T2A5P3.1
#=GS Q81969_HPV59/2-73       AC Q81969.1
#=GS VE5_HPV18/2-73          AC P06792.1
#=GS VE5_HPV35/10-80         AC P27226.1
#=GS Q9IR54_HPV82/6-81       AC Q9IR54.1
#=GS VE5_HPV39/2-72          AC P24833.1
#=GS VE5_HPV33/1-73          AC P06426.1
#=GS VE5_HPV31/11-83         AC P17385.1
#=GS C3PU85_RHPV1/7-79       AC C3PU85.1
#=GS H9LBT8_RHPV1/8-82       AC H9LBT8.1
#=GS C3PU77_RHPV1/8-82       AC C3PU77.2
#=GS C3PUJ9_RHPV1/6-82       AC C3PUJ9.1
A0A166MBV3_9PAPI/11-83             .....LLACFLLCFCVLLCVCLLIrPLLLSVSTYTSLILLVLL.LW.ITAASAFRCFIVYIVFVYIPLFLIHTHARFLI-t.
VE5_HPV16/11-83                    .....LLACFLLCFCVLLCVCLLIrPLLLSVSTYTSLIILVLL.LW.ITAASAFRCFIVYIIFVYIPLFLIHTHARFLI-t.
A0A0P0ERX0_HPV73/2-74              .....ILCIFVFLFCVGFCLCLCV.SLAVSVYIYPWLLVLIIItFI.HVSQSLLKVFFLYVLVFYIPMALVHYHATLQ--it
A0A0P0F0K8_HPV34/2-74              .....IIFIFVILFVFGFYMCLSV.SLAVSVCVYAWLLLLIII.TFlHVSQSLLKVYILYVCVFYIPMALVHYHATLQ--vt
C3PUA1_RHPV1/7-79                  ....f-VVLFLLLFLVGLVFCARIpSLLLCLSVYASVLLLMLL.FW.VTITSPFAAFGLCLFCFLLPLFCIHLHATSV--vy
T2A5P3_HPV68/2-73                  .....IVLVFLVWFCVCMYICCTV.PLLQSMHVCVYVWILVFV.FI.LVRTTPLEVFAVYILFFLLPMWVLHSFARYR--mp
Q81969_HPV59/2-73                  .....ITLVFVCCVCVCLCVCCNV.PLLQSVYMCAYTWLLVFV.YI.VVITSSYECFLLYILFFIIPLLLLYAHAILSIQ..
VE5_HPV18/2-73                     .....LSLIFLFCFCVCMYVCCHV.PLLPSVCMCAYAWVLVFV.YI.VVITSPATAFTVYVFCFLLPMLLLHIHAILSLQ..
VE5_HPV35/10-80                    .....VLLCFLLCFCVLLCLCLLVrSLLLSVSLYSALILLVLI.LW.VTVATPLLAFVVSCFCIYL--WMINAHAQYLA-v.
Q9IR54_HPV82/6-81                  ..avfLVCLFVLCVCVCLVLCCLL.PLLQSQYVFAAALLLIIC.FWfVVATSPLTTFTVYLICFYIPCFLLHLYTFSILQ..
VE5_HPV39/2-72                     .....ILLVFLVWFGVCIYICCNV.PLLPSVHVCAYVWIIVFV.FI.LIRTTPLEVFFVYLLFFVLPMWLLHRLAMDM--i.
VE5_HPV33/1-73                     .....MIFVFVLCFILFLCLSLLLrPLILSISTYAWLLVLVLL.LW.VFVGSPLKIFFCYLLFLYLPMMCINFHAQHMTQ..
VE5_HPV31/11-83                    .....IVLCFLLCFCVLLFVCLVIrPLVLSVSVYATLLLLIVI.LW.VIATSPLRCFCIYVVFIYIPLFVIHTHASFLSQ..
C3PU85_RHPV1/7-79                  ....f-IVIFLFLFFLGLVVCARLeSLVLCLCVYAKVLLLMLL.FW.VTIVPPFSAFALCFVCFLLPLLFIHLHALSVV-n.
H9LBT8_RHPV1/8-82                  ..llf-VVVFLLLFLLGLVACVRVsALLLCLHIYAHVLLLMLL.FW.VTITSPAAAFALCVGCFLCPLFFIHLHALSV--vy
C3PU77_RHPV1/8-82                  ..llf-IVVFLLLFLLGLVACARVqALLLCFDIYASVLLLMLL.FW.VTITPPLSAFALCLCCFLCPVALIHLHAVSV--vl
C3PUJ9_RHPV1/6-82                  tillf-IVVFLLLFLLGLVACARVqPLLLCFDIYASVLLLMLL.FW.VTITSPLSAFALCLCCFLCPVALIHLHAVSV--vl
#=GC seq_cons                      .....llllFLlhFsVsLslChpl.sLLlSlslYAhllLLlll.aW.VshsSPhpsFhlYlhhFhlPhhllHhHAh.h..h.
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