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Database: Pfam
Entry: Peptidase_C30
LinkDB: Peptidase_C30
Original site: Peptidase_C30 
#=GF ID   Peptidase_C30
#=GF AC   PF05409.15
#=GF DE   Coronavirus endopeptidase C30
#=GF AU   Studholme DJ;0000-0002-3010-6637
#=GF AU   Chuguransky S;0000-0002-0520-0736
#=GF SE   Manual
#=GF GA   25.00 25.00;
#=GF TC   40.90 320.00;
#=GF NC   24.00 18.40;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF WK   C30_Endopeptidase
#=GF CL   CL0124
#=GF RN   [1]
#=GF RM   12093723
#=GF RT   Structure of coronavirus main proteinase reveals combination of
#=GF RT   a chymotrypsin fold with an extra alpha-helical domain. 
#=GF RA   Anand K, Palm GJ, Mesters JR, Siddell SG, Ziebuhr J, Hilgenfeld
#=GF RA   R; 
#=GF RL   EMBO J 2002;21:3213-3224.
#=GF RN   [2]
#=GF RM   10725411
#=GF RT   Virus-encoded proteinases and proteolytic processing in the
#=GF RT   Nidovirales. 
#=GF RA   Ziebuhr J, Snijder EJ, Gorbalenya AE; 
#=GF RL   J Gen Virol 2000;81:853-879.
#=GF RN   [3]
#=GF RM   11842254
#=GF RT   Conservation of substrate specificities among coronavirus main
#=GF RT   proteases. 
#=GF RA   Hegyi A, Ziebuhr J; 
#=GF RL   J Gen Virol 2002;83:595-599.
#=GF RN   [4]
#=GF RM   12746549
#=GF RT   Coronavirus main proteinase (3CLpro) structure: basis for design
#=GF RT   of anti-SARS drugs.
#=GF RA   Anand K, Ziebuhr J, Wadhwani P, Mesters JR, Hilgenfeld R;
#=GF RL   Science. 2003;300:1763-1767.
#=GF RN   [5]
#=GF RM   18094151
#=GF RT   Structures of two coronavirus main proteases: implications for
#=GF RT   substrate binding        and antiviral drug design.
#=GF RA   Xue X, Yu H, Yang H, Xue F, Wu Z, Shen W, Li J, Zhou Z, Ding Y,
#=GF RA   Zhao Q, Zhang XC, Liao M, Bartlam M, Rao Z;
#=GF RL   J Virol. 2008;82:2515-2527.
#=GF DR   INTERPRO; IPR008740;
#=GF DR   MEROPS; C30;
#=GF DR   SCOP; 1lvo; fa;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This Coronavirus (CoV) domain, peptidase C30, is also known as
#=GF CC   3C-like proteinase (3CL-pro), or CoV main protease (M-pro)
#=GF CC   domain. CoV M-pro is a dimer where each subunit is composed of
#=GF CC   three domains I, II and III [1], [2], [3]. Domains I and II
#=GF CC   consist of six-stranded antiparallel beta barrels and together
#=GF CC   resemble the architecture of chymotrypsin, and of picornaviruses
#=GF CC   3C proteinases. The substrate-binding site is located in a cleft
#=GF CC   between these two domains. The catalytic site is situated at the
#=GF CC   centre of the cleft. A long loop connects domain II to the
#=GF CC   C-terminal domain (domain III). This latter domain has been
#=GF CC   implicated in the proteolytic activity of M-pro. In the active
#=GF CC   site of M-pro, Cys and His form a catalytic dyad [4], [5].
#=GF SQ   111
#=GS R1AB_CVH22/2994-3281        AC P0C6X1.1
#=GS H9BZX5_9BETC/3363-3650      AC H9BZX5.1
#=GS K4K1U5_9ALPC/3026-3312      AC K4K1U5.1
#=GS R1A_CVM2/3308-3595          AC P0C6U9.1
#=GS B7U2M9_9BETC/3275-3562      AC B7U2M9.1
#=GS A0A0K1RLM9_9ALPC/2903-3190  AC A0A0K1RLM9.1
#=GS A0A059VJE6_9ALPC/3026-3313  AC A0A059VJE6.1
#=GS S5YAF0_9ALPC/3070-3358      AC S5YAF0.1
#=GS R1A_BC512/3041-3328         AC P0C6F6.1
#=GS B2BW32_9GAMC/2788-3074      AC B2BW32.1
#=GS R1A_IBVB/2808-3096          AC P0C6V3.1
#=GS A0A0U1UZ20_9ALPC/3139-3426  AC A0A0U1UZ20.1
#=GS B8Q8U7_SARS/3269-3559       AC B8Q8U7.1
#=GS A3EXA2_BCHK4/3320-3610      AC A3EXA2.1
#=GS E0XIZ2_9BETC/3260-3550      AC E0XIZ2.1
#=GS B8Q8U6_SARS/3269-3559       AC B8Q8U6.1
#=GS R1A_BC279/3275-3565         AC P0C6F5.1
#=GS Q0ZJB1_CVHK1/3362-3649      AC Q0ZJB1.1
#=GS A0A0U1WHG4_9ALPC/2985-3272  AC A0A0U1WHG4.1
#=GS A0A0U1UZ65_BCHK4/3328-3618  AC A0A0U1UZ65.1
#=GS B1PHK0_9ALPC/3139-3426      AC B1PHK0.1
#=GS A8JNZ1_9ALPC/2970-3257      AC A8JNZ1.1
#=GS A0A140ESF0_9NIDO/2537-2825  AC A0A140ESF0.1
#=GS A0A0K2RW65_9BETC/3310-3597  AC A0A0K2RW65.1
#=GS A0A0K1Z0N1_SARS/3269-3559   AC A0A0K1Z0N1.1
#=GS A0A0P0ILY9_CVH22/2999-3286  AC A0A0P0ILY9.1
#=GS R1A_BCHK9/3132-3422         AC P0C6T6.1
#=GS H9BR16_9NIDO/2514-2808      AC H9BR16.1
#=GS B1PHI7_9ALPC/3232-3519      AC B1PHI7.1
#=GS R1AB_FIPV/2932-3219         AC Q98VG9.2
#=GS R1AB_FIPV/2932-3219         DR PDB; 4ZRO C; 29-299;
#=GS R1AB_FIPV/2932-3219         DR PDB; 5EU8 A; 29-299;
#=GS R1AB_FIPV/2932-3219         DR PDB; 4ZRO A; 29-299;
#=GS R1AB_FIPV/2932-3219         DR PDB; 4ZRO B; 29-299;
#=GS R1AB_FIPV/2932-3219         DR PDB; 4ZRO D; 29-299;
#=GS A3EXC0_BCHK4/3330-3620      AC A3EXC0.1
#=GS H9TEW9_9ALPC/2908-3195      AC H9TEW9.1
#=GS R1A_SARS2/3292-3582         AC P0DTC1.1
#=GS H9AA60_9BETC/3296-3583      AC H9AA60.1
#=GS B1PHI6_9ALPC/3232-3519      AC B1PHI6.1
#=GS A0A125R5A3_9ALPC/2919-3206  AC A0A125R5A3.1
#=GS H9BZX6_9BETC/3363-3650      AC H9BZX6.1
#=GS E0ZN51_BCHK9/3127-3417      AC E0ZN51.1
#=GS S5Z1D1_9ALPC/3070-3358      AC S5Z1D1.1
#=GS R1AB_BCHK4/3320-3610        AC P0C6W3.1
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOJ B; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOJ A; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YO9 B; 29-301;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOG B; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOG A; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOI B; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YOI A; 29-306;
#=GS R1AB_BCHK4/3320-3610        DR PDB; 4YO9 A; 29-306;
#=GS A0A0U1UZC3_9ALPC/2899-3186  AC A0A0U1UZC3.1
#=GS V5TFR4_9GAMC/2788-3074      AC V5TFR4.1
#=GS R1AB_BCHK5/3367-3657        AC P0C6W4.1
#=GS F2YDB2_SARS/3269-3559       AC F2YDB2.1
#=GS R1A_CVPPU/2907-3194         AC P0C6V2.1
#=GS R1A_CVPPU/2907-3194         DR PDB; 4F49 C; 29-299;
#=GS R1A_CVPPU/2907-3194         DR PDB; 4F49 D; 29-299;
#=GS R1A_CVPPU/2907-3194         DR PDB; 4F49 B; 29-298;
#=GS R1A_CVPPU/2907-3194         DR PDB; 4F49 A; 29-299;
#=GS H9BR07_9NIDO/2525-2813      AC H9BR07.1
#=GS R1A_CVH22/2994-3281         AC P0C6U2.1
#=GS R1A_CVH22/2994-3281         DR PDB; 1P9S A; 29-300;
#=GS R1A_CVH22/2994-3281         DR PDB; 1P9S B; 29-299;
#=GS R1A_CVH22/2994-3281         DR PDB; 2ZU2 A; 29-300;
#=GS R1A_CVH22/2994-3281         DR PDB; 2ZU2 B; 29-301;
#=GS A0A0U2UMS4_9ALPC/2905-3192  AC A0A0U2UMS4.1
#=GS U5LR11_9BETC/3339-3629      AC U5LR11.1
#=GS T2B9U0_MERS/3276-3566       AC T2B9U0.1
#=GS B1PHK1_9ALPC/3139-3426      AC B1PHK1.1
#=GS A0A0A7UXR0_9BETC/3322-3609  AC A0A0A7UXR0.1
#=GS H9TEX0_9ALPC/2908-3195      AC H9TEX0.1
#=GS B8Q8S5_SARS/3269-3559       AC B8Q8S5.1
#=GS A0A0P0LKV0_CVH22/2999-3286  AC A0A0P0LKV0.1
#=GS H9BQZ9_9NIDO/2547-2835      AC H9BQZ9.1
#=GS Q9J3E9_9BETC/3359-3646      AC Q9J3E9.1
#=GS R1A_CVMA5/3362-3648         AC P0C6V0.1
#=GS A0A0F6WGL5_9GAMC/2837-3125  AC A0A0F6WGL5.1
#=GS H9BR34_9NIDO/2440-2730      AC H9BR34.1
#=GS R1AB_BCHK9/3132-3422        AC P0C6W5.1
#=GS A3EXI9_BCHK9/3127-3417      AC A3EXI9.1
#=GS B2BW31_9GAMC/2788-3074      AC B2BW31.1
#=GS Q6UZF5_SARS/3269-3559       AC Q6UZF5.1
#=GS F2YDB1_SARS/3269-3559       AC F2YDB1.1
#=GS B6VDX7_THCOV/2516-2804      AC B6VDX7.1
#=GS D9J203_9ALPC/2895-3182      AC D9J203.1
#=GS D9J202_9ALPC/2895-3182      AC D9J202.1
#=GS B1PHJ3_9ALPC/3176-3463      AC B1PHJ3.1
#=GS R1A_CVMJH/3365-3652         AC P0C6V1.1
#=GS U5KNA9_9BETC/3339-3629      AC U5KNA9.1
#=GS R1AB_CVPPU/2907-3194        AC P0C6Y5.1
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U B; 29-300;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U E; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO B; 29-300;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U D; 29-301;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO D; 29-301;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U A; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO A; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO F; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U F; 29-300;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1P9U C; 29-300;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO E; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 2AMP B; 29-299;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 1LVO C; 29-300;
#=GS R1AB_CVPPU/2907-3194        DR PDB; 2AMP A; 29-299;
#=GS A0A096XNJ3_9ALPC/2984-3271  AC A0A096XNJ3.2
#=GS A0A0U1UZA8_9ALPC/3175-3462  AC A0A0U1UZA8.1
#=GS B1PHJ4_9ALPC/3176-3463      AC B1PHJ4.1
#=GS Q0PL14_9ALPC/2904-3191      AC Q0PL14.1
#=GS A0A088DIE1_9BETC/3433-3723  AC A0A088DIE1.1
#=GS R1AB_CVM2/3308-3595         AC P0C6X8.1
#=GS A0A023YA54_MERS/3377-3667   AC A0A023YA54.1
#=GS R1AB_IBVB/2808-3096         AC P0C6Y1.1
#=GS A8JNZ0_9ALPC/2970-3257      AC A8JNZ0.1
#=GS C0KYZ6_9BETC/3365-3652      AC C0KYZ6.1
#=GS R1A_BCHK5/3367-3657         AC P0C6T5.1
#=GS R1AB_CVHOC/3275-3562        AC P0C6X6.1
#=GS E0ZN59_BCHK9/3107-3397      AC E0ZN59.1
#=GS A0A1X9JQL5_9ALPC/2880-3167  AC A0A1X9JQL5.1
#=GS A0A0K2RVJ3_9BETC/3310-3597  AC A0A0K2RVJ3.1
#=GS R1A_BCHK4/3320-3610         AC P0C6T4.1
#=GS R1A_BCHK4/3320-3610         DR PDB; 2YNA A; 29-306;
#=GS R1A_BCHK4/3320-3610         DR PDB; 2YNB A; 29-306;
#=GS R1A_BCHK4/3320-3610         DR PDB; 2YNA B; 29-302;
#=GS R1A_BCHK4/3320-3610         DR PDB; 2YNB B; 29-302;
#=GS H9BR24_9NIDO/2490-2781      AC H9BR24.1
#=GS R1AB_SARS2/3292-3582        AC P0DTD1.1
#=GS R1AB_SARS2/3292-3582        DR PDB; 6Y2E A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE8 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGW A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WTJ A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 7BQY A; 29-301;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WNP A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WTM B; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REA A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFL A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RER A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH7 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6LZE A; 29-303;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XKF A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGS A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RG2 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RG3 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFU A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGV A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XOA A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R7Z A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF1 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH0 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGK A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REZ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R82 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REW A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REV A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R8T A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RG0 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF5 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFY A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGI A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RED A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFK A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGT A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REB A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHF A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REX A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WTM A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XOA B; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REK A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE9 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REL A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RET A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFA A; 29-301;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R7Y A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF7 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGM A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6M03 A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R84 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHE A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGP A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6YB7 A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFT A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R83 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6Y2G B; 29-303;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGY A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFM A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFS A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REC A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6Y84 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFC A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RG1 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFR A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGL A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REM A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFE A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R80 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 7C8U A; 29-302;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5R81 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH3 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHC A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6W63 A; 29-305;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFF A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 7BUY A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6M0K A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REE A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH9 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFQ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFI A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGX A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6Y2G A; 29-301;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REN A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGN A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGU A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REI A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WQF A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFX A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XKH A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH8 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH5 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFO A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGZ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF3 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGO A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGR A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RES A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFJ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REJ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF0 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REH A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XMK B; 29-302;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REU A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE4 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH2 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REO A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF9 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGQ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFH A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XOA C; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6LU7 A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH1 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFV A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REF A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE5 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF2 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF4 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFP A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFG A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF8 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REG A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFZ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XOA D; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFN A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XKF B; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6Y2F A; 29-305;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGJ A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6XMK A; 29-301;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGG A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RGH A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH6 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFB A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REY A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6YZ6 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFW A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 6WTK A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5REP A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RF6 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE6 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RE7 A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 7C8T A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHB A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHA A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 7C8R A; 29-306;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RHD A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RFD A; 29-304;
#=GS R1AB_SARS2/3292-3582        DR PDB; 5RH4 A; 29-304;
#=GS B8Q8S4_SARS/3269-3559       AC B8Q8S4.1
#=GS A0A0U1WHG1_9ALPC/2844-3130  AC A0A0U1WHG1.1
#=GS R1AB_CVMJH/3365-3652        AC P0C6Y0.1
#=GS R1A_SARS/3269-3559          AC P0C6U8.1
#=GS R1A_SARS/3269-3559          DR PDB; 4HI3 B; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9G A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB3 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 1Q2W B; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3AW1 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB3 B; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3ATW B; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9G B; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 4HI3 A; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB7 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9E A; 29-299;
#=GS R1A_SARS/3269-3559          DR PDB; 3ATW A; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3AW1 B; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB7 B; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9H A; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 2LIZ A; 187-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3FZD A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3AVZ A; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3V3M A; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9F A; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3SN8 A; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 6LO0 A; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB6 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9H B; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB4 B; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3AW0 A; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 4MDS A; 29-302;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB5 B; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB4 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3F9F B; 29-300;
#=GS R1A_SARS/3269-3559          DR PDB; 1Q2W A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB5 A; 29-301;
#=GS R1A_SARS/3269-3559          DR PDB; 3VB6 B; 29-306;
#=GS R1A_SARS/3269-3559          DR PDB; 6LNY A; 29-306;
#=GS R1A_CVHOC/3275-3562         AC P0C6U7.1
#=GS A0A0U1WHK4_SARS/3269-3559   AC A0A0U1WHK4.1
#=GS A0A0K1YZY7_SARS/3269-3559   AC A0A0K1YZY7.1
#=GS A0A1B3Q5W8_9BETC/3176-3466  AC A0A1B3Q5W8.1
#=GS A0A240FW17_9ALPC/2594-2878  AC A0A240FW17.1
#=GS A0A125R5A4_9ALPC/2919-3206  AC A0A125R5A4.1
#=GS A0A0U1WHD1_9ALPC/3132-3419  AC A0A0U1WHD1.1
#=GS R1AB_BC279/3275-3565        AC P0C6V9.1
#=GS Q06BE1_9BETC/3275-3562      AC Q06BE1.2
#=GS A3EXE7_BCHK5/3366-3656      AC A3EXE7.1
#=GS R1AB_SARS/3269-3559         AC P0C6X7.1
#=GS R1AB_SARS/3269-3559         DR PDB; 3E91 A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 2AMD B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SZN A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3TIU A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 5N19 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3TNS A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GT7 B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SND B; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK2 B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 2ZU5 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1WOF B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 1Z1J B; 1029-1306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2BX4 A; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2QIQ A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EBN A; 198-297;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9L A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z3E A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z94 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EA8 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2A5A A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1Z1I A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2D2D A; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SNA A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 3D62 A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK2 A; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EBN C; 198-298;
#=GS R1AB_SARS/3269-3559         DR PDB; 2QC2 A; 29-304;
#=GS R1AB_SARS/3269-3559         DR PDB; 4WY3 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2DUC A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 5C5O A; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2OP9 B; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9K A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Q6G B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3IWM D; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2ALV A; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 1Z1J A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EAJ B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 5C5N A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2AMD A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UJ1 A; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 4TWY A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2PWX A; 29-299;
#=GS R1AB_SARS/3269-3559         DR PDB; 2A5K B; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GZ7 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9L B; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GTB A; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EBN B; 198-297;
#=GS R1AB_SARS/3269-3559         DR PDB; 3M3T A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 1WOF A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 2C3S A; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 2K7X A; 187-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 6LNQ A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK4 B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 2D2D B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 2DUC B; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2VJ1 A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 4TWW B; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 5N5O A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 5B6O A; 29-310;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GT8 A; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GT7 A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 3TNT A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3E91 B; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Q6G A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 5B6O B; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2OP9 A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EAJ A; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GZ8 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2VJ1 B; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK3 A; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GZ9 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2V6N A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EA7 B; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z3D A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SNE A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2AMQ A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 3IWM C; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9J B; 29-304;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9K B; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2HOB A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2AMQ B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3TIT A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3IWM A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK3 B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SNB A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z3C A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3M3V B; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 2BX3 A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 4TWW A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UK4 A; 29-303;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SND A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3M3S B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3SNC A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EBN D; 198-298;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9G A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2H2Z A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EA7 A; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 2A5K A; 29-304;
#=GS R1AB_SARS/3269-3559         DR PDB; 2A5I A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 5C5O B; 29-300;
#=GS R1AB_SARS/3269-3559         DR PDB; 3M3S A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2QCY A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2ZU4 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2Z9J A; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3EA9 A; 29-301;
#=GS R1AB_SARS/3269-3559         DR PDB; 2QC2 B; 29-305;
#=GS R1AB_SARS/3269-3559         DR PDB; 3M3V A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 2GX4 A; 29-306;
#=GS R1AB_SARS/3269-3559         DR PDB; 1UJ1 B; 29-302;
#=GS R1AB_SARS/3269-3559         DR PDB; 3IWM B; 29-301;
#=GS A0A0F6SKM6_9GAMC/2837-3125  AC A0A0F6SKM6.1
#=GS R1AB_BC512/3041-3328        AC P0C6W0.1
#=GS T2B9I2_MERS/3276-3566       AC T2B9I2.1
#=GS R9QTB2_SARS/3261-3551       AC R9QTB2.1
#=GS R1AB_CVMA5/3362-3648        AC P0C6X9.1
#=GS R1AB_CVMA5/3362-3648        DR PDB; 6JIJ B; 29-297;
#=GS R1AB_CVMA5/3362-3648        DR PDB; 6JIJ C; 29-298;
#=GS R1AB_CVMA5/3362-3648        DR PDB; 6JIJ A; 29-297;
#=GS A0A0U1WHG0_SARS/3264-3554   AC A0A0U1WHG0.1
R1AB_CVH22/2994-3281                   GLWLGDIVYCPRHVIASNTTSA.IDYDHEYSIMRLHNFSII...SG...TAFLGVVGATMHGVTLK..IKVSQTNMHTP.RHSFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNG.......CTWWLK...GEKLFVEHYNEWAQANGFTAMNGEDA....FSILAAKTGVCVERLLHAIQV.LNNGFGGKQILGYSSLNDEFSINEVVKQMFGVNLQSGKTTSMFKSISL-f.......
H9BZX5_9BETC/3363-3650                 GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SG...RMSLTVMSYQMQGCQLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTFCW........
K4K1U5_9ALPC/3026-3312                 GLWLGDVVICPRHVIASNTNAL.IDYEHEISVMRLHNFSVS...VG...NVFLGVISATMKGANLH..IKVNQTNVNTP.EHSFKTIKQGESFNILACYDGMPSGVYGVTMRNNYTIRGSFITGACGSPGYNVTNGKVEFCYLHQLELGSGCHVGSNLEGVMYGCYEDQPTLQIEGVNHLVTPNVIAFLYGALLNG.......ITWWLN...SDKVSVESFNEWALNNGFTTCGNLDC....FNMLSAKTGVDVQRLLAAVQR.LHNSFGGKNILGYTTLTDEFTVGEVIKQMYGVTLQSNKVV---------gafcnlai
R1A_CVM2/3308-3595                     GLWLDDKVYCPRHVICSSADMTdPDYSNLLCRVISSDFCVM...SG...RMSLTVMSYQMQGSLLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQILAAIKR.LYSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVVKGTCCW........
B7U2M9_9BETC/3275-3562                 GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMQGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNN.......CNWFVQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLVKGIVCW........
A0A0K1RLM9_9ALPC/2903-3190             GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSARYKGVNLV..LKVSQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVK.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVESFFYPIMT-a.......
A0A059VJE6_9ALPC/3026-3313             GLWLGDTVICPRHVIASSTTST.IDYDYALSVLRLHNFSIS...SG...NVFLGVVGVTMRGALLQ..IKVNQNNVHTP.KYTYRTVRPGESFNILACYDGSAAGVYGVNMRSNYTIRGSFINGACGSPGYNINNGTVEFCYLHQLELGSGCHVGSDLDGVMYGGYEDQPTLQVEGASSLFTENVLAFLYAALING.......STWWLS...SSRIAVDRFNEWAVHNGMTTVVNTDC....FSILAAKTGVDVQRLLASIQS.LHKNFGGKQILGYTSLTDEFTTGEVIRQMYGVNLQSGYVSRACRN----vllv....
S5YAF0_9ALPC/3070-3358                 GLWLGDTVYCPRHVLAASTTTH.IDYEHALAIMRLHNFSIS...YG...NTFLGVVGCSTKGALLL..IKVGQNNVHTPgSYTFRTLKPGDSFNILACYDGTATGVYGVNLRTNHTIRGSFINGACGSPGFNIHGSTVEFCYLHQLELGSGCHVGSDMNGAMYGGYEDQPSFQIEGVSNLVSENVVAFLYGALLNG.......CNWWLD...QCGVTVEAYNDWAHSNGCTSLSSTDC....FTILAAKTGVEVSRVLAAIQR.LNVNFGGKAILGYTSLTDEFTVGEIIKQMFGVNLQSGIISRSVRNV---llv.....
R1A_BC512/3041-3328                    GLWLGDTVICPRHVIASNTTNV.IDYDHAMSLVRLHNFSIS...SG...NMFLGVISASMRGTLLH..IKVNQSNVNTP.NYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGALING.......DRWWLS...SVSVGVDTYNEWALRNGMTALKNVDC....FSLLVAKTGVDVGRLLASIQK.LHGNFGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNAS--iv......
B2BW32_9GAMC/2788-3074                 GLWLNDYVLCPRHILGKYTG--.EQWRDALINANNFDFHIL...YK...GMELQVVGRELVGALLK..LKVSMVNANTP.KYKFAKARIGDNFSIACAYNGHVSGLYTVTLRENGTLKGSFMSGSCGSVGYNVTNEGVEFVYMHHLELPGCVHGGSDLHGIFYGGYVDEEVLQRIPPAPANSRNIVAWLYAAVYNN.......CDWFVKygpKQVMSVEDFNEWASGYGFTKFEYHLA....FDVFSAATGVSVEQMLAAIKE.LADGWNYAPVLGSFHLDDEYSPEMIMQQTSGIVLQSN-VKKAT------kgfls...
R1A_IBVB/2808-3096                     GLWLGDTIYCPRHVLGKFSG--.DQWNDVLNLANNHEFEVT..tQH...GVTLNVVSRRLKGAVLI..LQTAVANAETP.KYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVkessfslPKW-LE...STTVSVDDYNKWAGDNGFTPFSTSTA....ITKLSAITGVDVCKLLRTIMV.KNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSS----FVRKATSW........
A0A0U1UZ20_9ALPC/3139-3426             GLWLGDIVVCPRHVMASSTTNT.IDYDYEYSMMRLHNFSVS...VG...NVFLGVNGVTMKGVNLH..IKVNQSNPHTP.KHTFRTLKPGDSFNILACYDGTPAGVYGITMRPNYTIRGSFINGACGSPGYNVVNGNVEFCYLHQLELGSGCHVGSNFDGVMYGNFQDQPSLQIEGADQLVTPNVVAFLYGALLNG.......VNWFVS...PERLSVEAFNEWAHNNGFTDMSGAEC....FTMLAAKTGVDVQRVLASIQK.IAKSFGGRNILGFTSLTDEFTAAEVIKQMYGVNLQSRKLPSVFNNIM--lv......
B8Q8U7_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A3EXA2_BCHK4/3320-3610                 GLWLDNTVWCPRHIMCPADQLTdPNYDALLISKTNHSFIVQ...KHigaQANLRVVAHSMVGVLLK..LTVDVANPSTP.AYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNG.......CKWFVK...PTRVGIVTYNEWALSNQFTEFVGTQS....IDMLAHRTGVSVEQMLAAIQS.LHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG-VKRISYGFIHW........
E0XIZ2_9BETC/3260-3550                 GLWLDDVVYCPRHVICTLEDMLnPNYDDLLIRKSNHNFLVQ...AS...NVQLRVIGHTMQNCLLK..LKVDIANPKTP.KYKFVRIQPGQTFSVLACYNGAPSGVYQCAMRSNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......ERWFLN...RFTTTLNDFNLVAMKYNYEPLTQDQVd..iLGPLSAQTGVAVMDMCAALKElLQNGLNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKVVKGTHHW........
B8Q8U6_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
R1A_BC279/3275-3565                    GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
Q0ZJB1_CVHK1/3362-3649                 GLWLDDKVYCPRHVICLSSNMNePDYSALLCRVTLGDFTIM...SG...RMSLTVVSYQMQGCQLV..LTVSLQNPYTP.KYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVKFVYMHQLELSTGCHTGTDFTGNFYGPYRDAQVVQLPVKDYVQTVNVIAWLYAAILNN.......CAWFVQ...NDVCSIEDFNVWAMTNGFSQVKADLV....LDALASMTGVSIETLLAAIKR.LYMGFQGRQILGSCTFEDELAPSDVYQQLAGVKLQ-SKTKRFIKETIYW........
A0A0U1WHG4_9ALPC/2985-3272             GLWLGDTVICPRHIIASSTSSI.IDYEHQYSVMRLHNFSVS...VG...NVFLGVVGVTMKGTNLH..IKVNQTNVHTP.EHTFKTLKQGDSFNILACYDGVPSGVYGVTLRTNNTIRGSFINGACGSPGYNINNGKVEFCYLHQLELGSGCHVGSNLDGVMYGGFEDQPTLQVEGANNLVTINVIAFLYGALLNG.......ITWFLS...SDRVTVESFNEWASVNGYTACGSTDC....FAMLAAKTNVDVQRILAAVQR.LHKGFGGKNILGFTTLTDEFTVTEVIKQMYGVSLQSGKVSSMFYNV---fvi.....
A0A0U1UZ65_BCHK4/3328-3618             GLWLDNTVWCPRHIMCPADQLTdPNYDALLISKTNHSFIVQ...KHigaQANLRVVAHSMVGVLLK..LTVDVANPSTP.AYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNG.......CKWFVK...PTRVGIVTYNEWALSNQFTEFVGTQS....IDMLAHRTGVSVEQMLAAIQS.LHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG-VKRISYGFMHW........
B1PHK0_9ALPC/3139-3426                 GLWLGDIVVCPRHVMASSTTNT.IDYEYEYSMMRLHNFSVS...VG...NVFLGVNGVTMEGVNLH..IKVNQSNPHTP.KHTFRTLKPGDSFNILACYDGTPAGVYGITMRPNYTIRGSFINGACGSPGYNVVNGNVEFCYLHQLELGSGCHVGSNFDGIMYGNFQDQPSLQIEGADQLVTPNVVAFLYGALLNG.......VNWFVS...PERLSVEAFNEWAHNNGFTDMSGAEC....FTMLAAKTGVDVQRVLASIQK.IAKSFGGRNILGFTSLTDEFTAAEVIKQMYGVNLQSRKLPSVFNNIM--lv......
A8JNZ1_9ALPC/2970-3257                 GVWLDDKVYCPRHVLASDTTVT.IDYDAVYHSMRLHNFSIS...KG...NVFLGVVGAVMQGANLV..ITVSQANVNTP.SYSFRTLKAGECFNILACYDGTPAGVYGVNLRSTHTIKGSFVNGACGSPGFVMNGYKVEFVYMHQIELGNASHVGSDMFGNIYGGFEDQPSIQLEGVATLITENVVAFLYAALING.......ERWWCS...NERCTIDSFNEWALGNGFTNLVSGDG....FSMLAAKTGVDVCQLLSAIQR.LATGLGGKTILGYASVTDEYTLSEVVRQMYGVNIQSTKTSSALKNL---flm.....
A0A140ESF0_9NIDO/2537-2825             GIWLKNVVYCPRHVIGKFRG--.DQWTHMVSIADCRDFIVKc.pIQ...GIQLNVQSVKMVGALLQ..LTVHTNNTATP.DYKFERLQPGSSMTIACAYDGIVRHVYHVVLQLNNLIYASFLNGACGSVGYTLKGKTLYLHYMHHIEFNNKTHSGTDLEGNFYGPYVDEEVIQQQTAFQYYTDNVVAQLYAHLLTVd....arPKW-LA...QSQISIEDFNSWAANNSFANFPCEQTnmsyIMGLSQTARVPVERILNTIIQ.LTTNRDGACIMGSYDFECDWTPEMVYNQ-APISLQSG----VVKKTCTW........
A0A0K2RW65_9BETC/3310-3597             GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMQGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNN.......CNWFVQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLVKGIVCW........
A0A0K1Z0N1_SARS/3269-3559              GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..vLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A0A0P0ILY9_CVH22/2999-3286             GLWLGDVVYCPRHVIASNTTMA.IDYEHEYSVMRLHNFSIT...SG...SVFLGVVGATMHGATLR..IKVSQTNMCTP.KHSFRTLKSGEGFNILACYDGCAHGVFGVNMRTNWTIRGSFINGACGSPGYNLRGSEVEFCYMHQIELGSGSHVGSSFDGVMYGGFDDQPNLQVESASQMLTTNVVAFLYAAILNG.......CTWWLK...GDRLSVEHYNEWAQSNGFTAMNGEDA....FSILAAKTGVCVERLLHAIQV.LSNGFGGRQILGYSSLNDEFSINEVVRQMFGVNLQSGKTTSVFKTLSL-f.......
R1A_BCHK9/3132-3422                    GIWLDNFVICPRHVMCSRDELAnPDYPRLSMRAANYDFHVS...QN...GHNIRVIGHTMEGSLLK..LTVDVNNPKTP.AYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSG.......ENWFLT...KSSISPAEFNNCAVKYMCQSVTSESLq..vLQPLAAKTGISVERMLSALKVlLSAGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQ-GKFQSMFRWTLQW........
H9BR16_9NIDO/2514-2808                 GIWLNNVIYCPRHILGKYQA--.SFWQDAVKVADTRDFVINs.qHS...KIQFRPVGLRLNNAILQivLPTEQNNPHTP.DYEFVTAKPGSSMTIACTYDGIVSAIYHVIMQTNGLIYASFMNGACGSVGYTLKNGKLLLHYMHHLEFNNKTHGGTDLNGNFYGDYIDEEIAQSISKAATLTDNALAHIYAHLSTIs....tkPKW-LS...YQELSVEDFNDWAKNNDHTQFPSCDEnytyLDALAKSTGVSIKRVLSTLVT.LHTNWGSASVLGMSTFDLDFTPEMVYNQ-APITLQGTKKSTIFT-----wlasv...
B1PHI7_9ALPC/3232-3519                 GIWLGDEVICPRHVIASSTNTT.IDYDHEYTMMRLHNFSVS...SG...NLFIGVVSAKMRGASLV..IKVNQNNPHTP.KHVFKTLKAGDAFNILACYDGVPSGVYGTILRHNKTIRGSFINGACGSPGFNINGDTVEFVYLHQLELGSGCHVGSNMEGAMYGGFEDQPSLQIEGADCLVTVNVIAFLYGAILNG.......CTWFLS...NERITAEVFNGWAHANNFTEVGSLDC....FNILAAKTGVDIQRVLASIQK.LSKGFGGRNIIGYASLTDEFTVTEVVKQMYGVSLQSKRVPSVFNNV---ilv.....
R1AB_FIPV/2932-3219                    GLWLGDEVICPRHVIASDTSRV.INYENELSSVRLHNFSIA...KN...NAFLGVVSAKYKGVNLV..LKVNQVNPNTP.EHKFKSVRPGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMTLESYNAWAKTNSFTEIVSTDA....FNMLAAKTGYSVEKLLECIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKSIFYPMMT-a.......
#=GR R1AB_FIPV/2932-3219         SS    EEEETTEEEEEGGGG-S-TTS-.--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEE-TTS-EEEE-TTS-BGGG--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHTTTB----TCGG....GHHHHHHHS--HHHHHHHHHH.HTT--TT--BTTBSS---SS-HHHHHHHHTT-XXXXXXXXXXXXXXXX-X.......
A3EXC0_BCHK4/3330-3620                 GLWLDNTVWCPRHIMCPADQLTdPNYDALLISKTNHSFIVQ...KHigaQANLRVVAHSMVGVLLK..LTVDVANPSTP.AYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNG.......CKWFVK...PTRVGIVTYNEWALSNQFTEFVGTQS....IDMLAHRTGVSVEQMLAAIQS.LHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG-VKRISYGFIHW........
H9TEW9_9ALPC/2908-3195                 GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSAKYKGVNLV..LKVNQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVTSFFYPIMT-a.......
R1A_SARS2/3292-3582                    GLWLDDVVYCPRHVICTSEDMLnPNYEDLLIRKSNHNFLVQ...AG...NVQLRVIGHSMQNCVLK..LKVDTANPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCASLKElLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHW........
H9AA60_9BETC/3296-3583                 GLWLDDKVYCPRHVICSASDMTnPDYPNLLCRVTSSDFTIM...SD...RMSLTVMSYQMQGCMLV..LTITLQNPRTP.KYTFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSFTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYVQSVNFVAWLYAAILNN.......CNWFVQ...SDRCSIEDYNVWAMSNGFSQIKSDLV....VDALASMTGVSLENLLAAIKR.LHKGFQGRQIMGSCAFEDELTPSDVYQQLAGVKLQ-SKRSRVIKGTICW........
B1PHI6_9ALPC/3232-3519                 GIWLGDEVICPRHVIASSTNTT.IDYDHEYTMMRLHNFSVS...SG...NLFIGVVSAKMRGASLV..IKVNQNNPHTP.KHVFKTLKAGDAFNILACYDGVPSGVYGTILRHNKTIRGSFINGACGSPGFNINGDTVEFVYLHQLELGSGCHVGSNMEGAMYGGFEDQPSLQIEGADCLVTVNVIAFLYGAILNG.......CTWFLS...NERITAEVFNGWAHANNFTEVGSLDC....FNILAAKTGVDIQRVLASIQK.LSKGFGGRNIIGYASLTDEFTVTEVVKQMYGVSLQSKRVPSVFNNV---ilv.....
A0A125R5A3_9ALPC/2919-3206             GLWIGDEVICPRHVIASDTSRV.INYENELSSVRLHNFSIA...KG...NVFLGVVSAKYKGVNLV..LKVNQVNPNTP.EHKFKSVKPGDSFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVIAFLYAALING.......ERWFVT...NASMSLESYNAWAKTNSFTEIVSTDA....FNMLAAKTGYSVEKLLECIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKSLFYPMMT-a.......
H9BZX6_9BETC/3363-3650                 GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SG...RMSLTVMSYQMQGCQLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVTMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTFCW........
E0ZN51_BCHK9/3127-3417                 GIWLDNFVICPRHVMCSRDELTnPDYARLSMRAANYDFHVS...QN...GHNIRVVGHVMEGSLLK..LTVDVNNPKTP.SYSFIRVSTGQAMSLLACYDGVPTGVYTCTLRSSGTLRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDNTITVNVLAWLYAAVLSG.......ENWFLT...KSSISPAEFNNCAIKYMCQSVTSESLq..vLQPLAAKTGVSVERMLSALKVlLSAGFCGRTIMGSCALEDEHTPYDIGRQMLGVKLQ-GKFQSACKWTLQW........
S5Z1D1_9ALPC/3070-3358                 GLWLGDTVYCPRHVLAASTTTH.IDYEHALAIMRLHNFSIS...YG...NTFLGVVGCSTKGALLL..IKVGQNNVHTPgSYTFRTLKPGDSFNILACYDGTATGVYGVNLRTNHTIRGSFINGACGSPGFNIHGSTVEFCYLHQLELGSGCHVGSDMNGAMYGGYEDQPSFQIEGVSNLVSENVVAFLYGALLNG.......CNWWLD...QCGVTVEAYNDWAHSNGCTSLSSTDC....FTILAAKTGVEVSRVLAAIQR.LNVNFGGKAILGYTSLTDEFTVGEIIKQMFGVNLQSGIISRSVRNV---llv.....
R1AB_BCHK4/3320-3610                   GLWLDNTVWCPRHIMCPADQLTdPNYDALLISKTNHSFIVQ...KHigaQANLRVVAHSMVGVLLK..LTVDVANPSTP.AYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNG.......CKWFVK...PTRVGIVTYNEWALSNQFTEFVGTQS....IDMLAHRTGVSVEQMLAAIQS.LHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG-VKRISYGFIHW........
#=GR R1AB_BCHK4/3320-3610        SS    EEEETTEEEEEGGGGS-GGGTTS--HHHHHHHS-GGGEEEE...E-SSS-EEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----GGGTT-EEEEEETTEEEEEEEEEEEEETTEEEEE-TTS-BSSS--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHTTTB------HH....HHHHHHHHT--HHHHHHHHHH.HHH--TT--BTTBSS------HHHHHHHTTT----XX-XXXXXXXXXXX........
A0A0U1UZC3_9ALPC/2899-3186             GLWLGDTVYCPRHIIASNTNAV.IDYDHAYTVMRLHNFSIS...AG...NIYLGVVSATMHGANLH..IKVNQSNVHTP.VHSFRTVKPGEMFNILACYDGTPAGVYSVNLRTNHTIKGSFINGACGSPGYNIVNGTVEFVYMHQIELGSGCHVGSSFDGKIYGNYEDQPTLQIEGSANLVTDNVVAFLYGALLNG.......ITWWLS...PSRITVEAFNEWASVSGYTPLQSADG....YSILAAKTGVEVERILSSIQK.HANGFGGRNVLGYSALTDDFTLSEVVKQMFGVNLQSSKKVSCCKS----lllv....
V5TFR4_9GAMC/2788-3074                 GLWLNDYVLCPRHILGKYTG--.EQWRDALINANNFDFHIL...YK...GMELQVVGRELVGALLK..LKVSMVNANTP.KYKFAKARIGDNFSIACAYNGHVSGLYTVTLRENGTLKGSFMSGSCGSVGYNVTNEGVEFVYMHHLELPGCVHGGSDLHGMFYGGYVDEEVLQRIPPAPANSRNIVAWLYAAVYNN.......CDWFVKygpKQVMSVEDFNEWASGYGFTKFEYHLA....FDVFSAATGVSVEQMLAALKE.LADGWNYAPILGSFHLDDEYSPEMIMQQTSGIVLQSN-VKKAT------kgfls...
R1AB_BCHK5/3367-3657                   GLWLDNYVWCPRHVMCPADQLSdPNYDALLVSKTNLSFIVQ...KNvgaPANLRVVGHTMVGTLLK..LTVESANPQTP.AYTFTTVKPGASFSVLACYNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNG.......CNWFVK...PNKTGIATFNEWAMSNQFTEFIGTQS....VDMLAHKTGVSVEQLLYAIQT.LHKGFQGKTILGNSMLEDEFTPDDVNMQVMGVVMQSG-VKRISYGLVHW........
F2YDB2_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKAlLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
R1A_CVPPU/2907-3194                    GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSARYKGVNLV..LKVNQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMT-a.......
#=GR R1A_CVPPU/2907-3194         SS    EEEETTEEEEEGGGG-S-TTS-.--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEE-TTS-EEEE-TTS-BGGG--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...SB---HHHHHHHHTTTTB-----SGG....GHHHHHHHT--HHHHHHHHHH.HTT--TT--BTTBSS---SS-HHHHHHHHH--XXXXXXXXXXXXXXXX-X.......
H9BR07_9NIDO/2525-2813                 GIWLKNVVYCPRHVIGKYRG--.TQWAQMVSIADCHDFCVKc.pTQ...GVQLNVQSVKMVGALLQ..LTVHTSNTLTP.DYRFERLTPGSSMTIACAYDGVVRHVYHVVLQLNNLIYASFLNGACGSVGYTLKGKTLCLHYMHHIEFNNKTHSGTDLEGNFYGPYIDEEIAQNQTAFQYYTDNVVAQMYAHLLTVd....asPRW-LA...QAAISVDDFNAWASSNSFASFPCEQTnmayILGLAQVTRVPLERVLNTIIQ.LTLNRDGVIIMGAPDFDCDWTPEMVYNQ-APIALQSG----VVKKTCTW........
R1A_CVH22/2994-3281                    GLWLGDIVYCPRHVIASNTTSA.IDYDHEYSIMRLHNFSII...SG...TAFLGVVGATMHGVTLK..IKVSQTNMHTP.RHSFRTLKSGEGFNILACYDGCAQGVFGVNMRTNWTIRGSFINGACGSPGYNLKNGEVEFVYMHQIELGSGSHVGSSFDGVMYGGFEDQPNLQVESANQMLTVNVVAFLYAAILNG.......CTWWLK...GEKLFVEHYNEWAQANGFTAMNGEDA....FSILAAKTGVCVERLLHAIQV.LNNGFGGKQILGYSSLNDEFSINEVVKQMFGVNLQSGKTTSMFKSISL-f.......
#=GR R1A_CVH22/2994-3281         SS    EEEETTEEEEEGGGG-S-TTS-.--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEESSSSEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEE-TTS-EEEE-TTS-BGGG--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHCTTB-----GGG....HCHHHHCCT--HHHHHHHHHH.HTT--TT--BTTBSS------HHHHHHHHH----XXXXXXXXXXXXXX-X.......
A0A0U2UMS4_9ALPC/2905-3192             GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KH...NVFLGVVSARCKGVNLV..LKVNQVNPNTP.EHKFKSVKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGANFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFIT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQVGKVKSFFYPIMT-a.......
U5LR11_9BETC/3339-3629                 GLWLDNIVYCPRHVMCPQDQLVdPNYDALLNSMTNHSFTIQrhgRS...TANLRCTGHAMHGTLLK..LTVDSANPETP.AYTFTTIKQGSSFSVLACYNGRPSGTYTVVMRPNSTIKGSFLCGSCGSVGYVKEGNVINFCYMHQMELSNGTHTGSSFDGNMYGNFQDRQIYQAQLSDKHCTINVVAWLYAAVLNG.......CNWFVK...PNKTGVAAFNEWALSNQFTEFVSTQA....LELLAVKTGVQIEQLLYSIQQ.LNNGFQGNVILGSAMLEDEYTPEDVNMQMMGVVMQSS-VRKITYGLTHW........
T2B9U0_MERS/3276-3566                  GLWLDNTVWCPRHVMCPADQLSdPNYDALLISMTNHSFSVQ...KHigaPANLRVVGHAMQGTLLK..LTVDVANPSTP.AYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNG.......CAWFVK...PNRTSVVSFNEWALANQFTEFVGTQS....VDMLAVKTGVAIEQLLYAIQQ.LYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSG-VRKVTYGTAHW........
B1PHK1_9ALPC/3139-3426                 GLWLGDIVVCPRHVMASSTTNT.IDYEYEYSMMRLHNFSVS...VG...NVFLGVNGVTMEGVNLH..IKVNQSNPHTP.KHTFRTLKPGDSFNILACYDGTPAGVYGITMRPNYTIRGSFINGACGSPGYNVVNGNVEFCYLHQLELGSGCHVGSNFDGIMYGNFQDQPSLQIEGADQLVTPNVVAFLYGALLNG.......VNWFVS...PERLSVEAFNEWAHNNGFTDMSGAEC....FTMLAAKTGVDVQRVLASIQK.IAKSFGGRNILGFTSLTDEFTAAEVIKQMYGVNLQSRKLPSVFNNIM--lv......
A0A0A7UXR0_9BETC/3322-3609             GLWLDNKVYCPRHVICAANDMVdPDYEALLCRVTSTDFVVM...FD...RMSLTVMSYQMQGAMLI..LTVTLQNTKTP.KYTFGNVKPGETFTVLAAYNGKPQGAFHVTMRSSFTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGNFYGPYRDAQVVQLPIQDYVQSVNFVAWLYAAILNN.......CNWFIQ...SDICSVEDYNVWAMANGFSQFTMDLV....IDALASMTGVPVEKCLAAIKR.LNNGFQGRQILGSCVFEDELTPSDVYQQLAGVKLQ-SKRTRVFKGTLCW........
H9TEX0_9ALPC/2908-3195                 GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSAKYKGVNLV..LKVNQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVTSFFYPIMT-a.......
B8Q8S5_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A0A0P0LKV0_CVH22/2999-3286             GLWLGDVVYCPRHVIASNTTMA.IDYEHEYSVMRLHNFSIT...SG...SVFLGVVGATMHGATLR..IKVSQTNMCTP.KHSFRTLKSGEGFNILACYDGCAHGVFGVNMRTNWTIRGSFINGACGSPGYNLRGSEVEFCYMHQIELGSGSHVGSSFDGVMYGGFDDQPNLQVESASQMLTTNVVAFLYAAILNG.......CTWWLK...GDRLSVEHYNEWAQSNGFTAMNGEDA....FSILAAKTGVCVERLLHAIQV.LSNGFGGRQILGYSSLNDEFSINEVVRQMFGVNLQSGKTTSVFKTLSL-f.......
H9BQZ9_9NIDO/2547-2835                 GIWLKNVVYCPRHVIGKFRG--.DQWTHMVSIADCRDFIVKc.pTQ...GVQLNVQSVKMVGALLQ..LTVHTNNTATP.DYKFERLAPGSSMTIACAYDGVVRHVYHVVLQLNNLIYASFLNGACGSVGYTLKGKTLYLHYMHHIEFNNKTHSGTDLEGNFYGPYVDEEVIQHQTAFQYYTDNVVAQLYAHLLTVd....arPKW-LA...HSQISIEDFNSWAANNSFANFPCEQTnmsyIMGLSQTARVPVERILNTIIQ.LTLNRDGACIMGSHDFECDWTPEMVYNQ-APISLQSG----VVKKTCMW........
Q9J3E9_9BETC/3359-3646                 GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SG...RMSLTVMSYQMQGCQLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
R1A_CVMA5/3362-3648                    GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SG...RMSLTVMSYQMQGCQLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
A0A0F6WGL5_9GAMC/2837-3125             GLWLGDSIYCPRHVLGKFSG--.DQWGDVLNLANNHEFEVV..tGN...GVTLSVVSRRLKGAVLI..LQTAIVNADTP.KYKFLKANCGDSFTIACSYGGIVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFYYMHHLELPNALHTGTDLMGEFYGGYIDEEVAQKVQPDKLVTNNILAWLYAAIISVressfstPKW-LE...STTVSIEDYNKWAVDNGFTSFVSCTA....ITKLSAITGVDVCKLLRTIMV.KSAQWGSEPILGQYNFEDEMTPESVFNHVGGVRLQSS----VVKRAAS-w.......
H9BR34_9NIDO/2440-2730                 GVWLHNIVYCPRHVIGKYTG--.DQWQLMVSILDCNDFIIKc.pTQ...GIQLTVQSVKMVGAVLQ..LTVHSSNAHTP.KYEFTRLTPGASMTIACAYDGIVRNVYHVVLHLNNLIYASFLNGACGSVGYTVKGATLHLHYMHHLEFNNQTHGGTDFHGVFYGPYIDEEIAQQQMPTQYFTDNVVAQIYAHLLTId....rsPKW-LA...RQAISDEEFNRWAVNNAFANYPCDSAnlpyLTGLAETSKVSIGRVLNTIIQ.LTLNRDGALIMGHPDFECDWTPQMVFNQ-APINLQASVVS---------tcfnwcl.
R1AB_BCHK9/3132-3422                   GIWLDNFVICPRHVMCSRDELAnPDYPRLSMRAANYDFHVS...QN...GHNIRVIGHTMEGSLLK..LTVDVNNPKTP.AYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSG.......ENWFLT...KSSISPAEFNNCAVKYMCQSVTSESLq..vLQPLAAKTGISVERMLSALKVlLSAGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQ-GKFQSMFRWTLQW........
A3EXI9_BCHK9/3127-3417                 GIWLDNFVICPRHVMCSRDELAnPDYPRLSMRAANYDFHVS...QN...GHNIRVIGHTMEGSLLK..LTVDVNNPKTP.AYSFIRVSTGQAMSLLACYDGLPTGVYTCTLRSNGTMRASFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDFSGAFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSG.......ENWFLT...KSXISPAEFNNCAVKYMCQSVTSESLq..vLQPLAAKTGVSVERMLSALKVlLSAGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQ-GKFQSVFRWTLQW........
B2BW31_9GAMC/2788-3074                 GLWLNDYVLCPRHILGKYTG--.EQWRDALINANNFDFHIL...YK...GMELQVVGRELVGALLK..LKVSMVNANTP.KYKFAKARIGDNFSIACAYNGHVSGLYTVTLRENGTLKGSFMSGSCGSVGYNVTNEGVEFVYMHHLELPGCVHGGSDLHGIFYGGYVDEEVLQRIPPAPANSRNIVAWLYAAVYNN.......CDWFVKygpKQVMSVEDFNEWASGYGFTKFEYHLA....FDVFSAATGVSVEQMLAAIKE.LADGWNYAPVLGSFHLDDEYSPEMIMQQTSGIVLQSN-VKKAT------kgfls...
Q6UZF5_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
F2YDB1_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKAlLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
B6VDX7_THCOV/2516-2804                 GIWLNNVVYCPRHVFGKFKG--.EQWQHIASIADCRDFCVVc.pTQ...GIQLTVQSVKMVGAILQ..LTVHTNNTATP.DYEFVRLTPGSSMTIACAYDGVVRNVYHVVLQTNNLIYASFLNGACGSVGYTLKGKTLCLHYMHHLEFNNQTHGGTDLHGVFYGPYVDEEIAQQQTTFQYYTDNVVAQLYAHLLTVd....asPRW-LA...QAEVSETDFNAWASNNSFANFPCEPAnmsyILGLAQTSRVSIGRVLNTIIQ.LTLNRNGSLIMGKPDFECDWTPEMVYNQ-APITLQSG----IVQRTSMW........
D9J203_9ALPC/2895-3182                 GLWLGDEVICPRHVIASDTTKT.INYESDLLGVRLHNFSVS...KG...NDFLGVIGCSYRGVNLV..IKVSQVNTQTP.KHKFRTVKAGDSFNILACYDGKPNGVYGVNMRTQGTIRGSFINGTCGSPGYVLEGDTVHFVYMHHLELGNGSHVGSDFNGVMYGGYEDQPSLQLEGANVMSTENVVAFLYAAIING.......ERWFIN...SGYTSLETFNNWARSNGYTELASLDV....FSMLAAKTSINVERLLDAIIR.LSTGLGGRTILGYGSLSDEFTPTEVVRQMFGVNLQSTKVKSYCYPV---lmi.....
D9J202_9ALPC/2895-3182                 GLWLGDEVICPRHVIASDTTKT.INYESDLLGVRLHNFSVS...KG...NDFLGVIGCSYRGVNLV..IKVSQVNTQTP.KHKFRTVKAGDSFNILACYDGKPNGVYGVNMRTQGTIRGSFINGTCGSPGYVLEGDTVHFVYMHHLELGNGSHVGSDFNGVMYGGYEDQPSLQLEGANVMSTENVVAFLYAAIING.......ERWFIN...SGYTSLETFNNWARSNGYTELASLDV....FSMLAAKTSINVERLLDAIIR.LSTGLGGRTILGYGSLSDEFTPTEVVRQMFGVNLQSTKVKSYCYPV---lmi.....
B1PHJ3_9ALPC/3176-3463                 GLWLGDEVICPRHVIASSINSA.IDYDHEYTMMRLHNFSVS...SG...NLFIGVVSAKMRGASLV..IKVNQNNPHTP.KHVFKTLRAGDAFNILACYDGVPSGVYGTILRHNKTIRGSFINGACGSPGFNINGDTVEFVYLHQLELGSGCHVGSNMEGVMYGGFDDQPSLQIEGADCLVTVNVIAFLYGAILNG.......CTWFLS...NERVSAEVFNGWAHDNNFTDVGSFDC....FNILAAKTGVDVQRILASIQK.LAKGFGGRNIIGYASLTDEFTVSEVVKQMYGVSLQSKRVPSIFNNVT--lv......
R1A_CVMJH/3365-3652                    GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SD...RMSLTVMSYQMQGSLLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
U5KNA9_9BETC/3339-3629                 GLWLDNIVYCPRHVMCPQDQLVdPNYDALLNSMTNHSFTIQrhgRS...TANLRCTGHAMHGTLLK..LTVDSANPETP.AYTFTTIKQGSSFSVLACYNGRPSGTYTVVMRPNSTIKGSFLCGSCGSVGYVKEGNVINFCYMHQMELSNGTHTGSSFDGNMYGNFQDRQIYQAQLSDKHCTINVVAWLYAAVLNG.......CNWFVK...PNKTGVAAFNEWALSNQFTEFVSTQA....LELLAVKTGVQIEQLLYSIQQ.LNNGFQGNVILGSAMLEDEYTPEDVNMQMMGVVMQSS-VRKITYGLTHW........
R1AB_CVPPU/2907-3194                   GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSARYKGVNLV..LKVNQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMT-a.......
#=GR R1AB_CVPPU/2907-3194        SS    EEEETTEEEEEGGGG-S-TTS-.--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEE-TTS-EEEE-TTS-BGGG--SSSS-----S--B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHTTTB---S-SGG....GHHHHHHHT--HHHHHHHHHH.HTT--TT--BTTBSS---SS-HHHHHHHHS-SXXXXXXXXXXXXXXXX-X.......
A0A096XNJ3_9ALPC/2984-3271             GVWLGDQVYAPRHVIASDVTKI.VDYDTEQNLVRSHNFSIS...RG...NSYLTVKGFRFEGCNVV..ISVVEVNPFTP.EHKFDTLKPGDNFNILACYDGIPSGVYGVTLRHNSTIKGSFVNGTCGSPGYVISNGVIKFCYLHQMELGSGAHVGSDFNGKMYGGYQDQARIQVEGANKLITENVIAFFYAALLNG.......ERWWCS...KDSVCVTNFNSWAADNHYTMLSTTDV....FNLVASKTGVSVEQVLAAIIS.YAKGFGHRTILGYASINDEYTITEVMQQMFGVQLQSSRVKKVFEGFT--lf......
A0A0U1UZA8_9ALPC/3175-3462             GLWLGDEVICPRHVIASSINSA.IDYDHEYTMMRLHNFSVS...SG...NLFIGVVSAKMRGASLV..IKVNQNNPHTP.KYVFKTLRAGDAFNILACYDGVPSGVYGTILRHNKTIRGSFINGACGSPGFNINGDTVEFVYLHQLELGSGCHVGSNMEGVMYGGFDDQPSLQIEGADCLVTVNVIAFLYGAILNG.......CTWFLS...NERVSAEVFNGWAHDNNFTDVGSLDC....FNILAAKTGVDVQRVLASIQK.LAKGFGGRNIIGYASLTDEFTVSEVVKQMYGVSLQSKRVPSIFNNVT--lv......
B1PHJ4_9ALPC/3176-3463                 GLWLGDEVICPRHVIASSINSA.IDYDHEYTMMRLHNFSVS...SG...NLFIGVVSAKMRGASLV..IKVNQNNPHTP.KHVFKTLRAGDAFNILACYDGVPSGVYGTILRHNKTIRGSFINGACGSPGFNINGDTVEFVYLHQLELGSGCHVGSNMEGVMYGGFDDQPSLQIEGADCLVTVNVIAFLYGAILNG.......CTWFLS...NERVSAEVFNGWAHDNNFTDVGSFDC....FNILAAKTGVDVQRILASIQK.LAKGFGGRNIIGYASLTDEFTVSEVVKQMYGVSLQSKRVPSIFNNVT--lv......
Q0PL14_9ALPC/2904-3191                 GLWLGDEVICPRHVIASDTTRV.INYENEMSSVRLHNFSVS...KN...NVFLGVVSARYKGVNLV..LKVNQVNPNTP.EHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALING.......ERWFVT...NTSMSLESYNTWAKTNSFTELSSTDA....FSMLAAKTGQSVEKLLDSIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMT-a.......
A0A088DIE1_9BETC/3433-3723             GLWLDNTVYCPRHVMCTPEELLaPDYDSILLRKATHSFTVQ...YG...TAYLKVVSYKMTGSVLQ..LGVDQINPETP.KYKFVRAKPGATFSVLACYNGMPAGVYQVAMRPNHTIKGSFLNGSCGSVGYTLGYDRVEFCYMHHMELPTGVHTGTDLEGTFYGDFVDRQTSQSAGSDNTLTLNVLAWLYAAVING.......ERWFIV...PQTCALTDFNTAVLKYGYQSLTEDGVa..aLDPLVAQTGISVQTMCASLKDlLVHGMRGRCILSSPTLEDEFTPFDIVRQCSGVTLQST-VRSVSSK----ffqw....
R1AB_CVM2/3308-3595                    GLWLDDKVYCPRHVICSSADMTdPDYSNLLCRVISSDFCVM...SG...RMSLTVMSYQMQGSLLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGKSQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQILAAIKR.LYSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVVKGTCCW........
A0A023YA54_MERS/3377-3667              GLWLDNYVWCPRHVMCPADQLNdPNYDGLLISMTNHSFTVQ...KHvgaPANLRVIGHAMQGTLLK..LTVDSPNPNTP.AYTFTTVKPGASFSVLACYNGRPTGTFTVVMRPNHTIKGSFLCGSCGSVGYTKEGNVINFCYMHQMELANGTHTGSSFDGNMYGAFQDRQVHQAQLTDKYCTVNIVAWLYAAILNG.......CTWFVK...PSRTSVVSFNEWAMANQFTEFIGTHA....LDMLAVKTGVSVEQLLSAIQQ.LNQGFQGKQILGSSMLEDEFTPEDVNMQIMGVVMQSG-VKKVTYGTFHW........
R1AB_IBVB/2808-3096                    GLWLGDTIYCPRHVLGKFSG--.DQWNDVLNLANNHEFEVT..tQH...GVTLNVVSRRLKGAVLI..LQTAVANAETP.KYKFIKANCGDSFTIACAYGGTVVGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFFYMHHLELPNALHTGTDLMGEFYGGYVDEEVAQRVPPDNLVTNNIVAWLYAAIISVkessfslPKW-LE...STTVSVDDYNKWAGDNGFTPFSTSTA....ITKLSAITGVDVCKLLRTIMV.KNSQWGGDPILGQYNFEDELTPESVFNQIGGVRLQSS----FVRKATSW........
A8JNZ0_9ALPC/2970-3257                 GVWLDDKVYCPRHVLASDTTVT.IDYDAVYHSMRLHNFSIS...KG...NVFLGVVGAVMQGANLV..ITVSQANVNTP.SYSFRTLKAGECFNILACYDGTPAGVYGVNLRSTHTIKGSFVNGACGSPGFVMNGYKVEFVYMHQIELGNASHVGSDMFGNIYGGFEDQPSIQLEGVATLITENVVAFLYAALING.......ERWWCS...NERCTIDSFNEWALGNGFTNLVSGDG....FSMLAAKTGVDVCQLLSAIQR.LATGLGGKTILGYASVTDEYTLSEVVRQMYGVNIQSTKTSSALKNL---flm.....
C0KYZ6_9BETC/3365-3652                 GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SD...RMSLTVMSYQMQGSLLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQMLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
R1A_BCHK5/3367-3657                    GLWLDNYVWCPRHVMCPADQLSdPNYDALLVSKTNLSFIVQ...KNvgaPANLRVVGHTMVGTLLK..LTVESANPQTP.AYTFTTVKPGASFSVLACYNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCAFDGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNG.......CNWFVK...PNKTGIATFNEWAMSNQFTEFIGTQS....VDMLAHKTGVSVEQLLYAIQT.LHKGFQGKTILGNSMLEDEFTPDDVNMQVMGVVMQSG-VKRISYGLVHW........
R1AB_CVHOC/3275-3562                   GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMRGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNN.......CNWFIQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLFKGTVCW........
E0ZN59_BCHK9/3107-3397                 GVWLDNFVMCPRHVMCSRDELQnPDYARLSMRAANYDFHVS...HN...GHNIRVIGHVMVGSLLK..LTVDVNNPRTP.AYSFIRVSTGQAMSLLACYDGVPTGVYTCTLRSNGTLKASFLCGSCGSPGFVMNGKEVQFCYQHQLELPNGTHTGTDMSGVFYGPFEDKQVPQLAAPDCTITVNVLAWLYAAVLSG.......ENWFLT...KSSITPAEFNNCAVKYMCQSVSSDSLq..vLQPLAAKTGISVERMLSALKVlLSTGFCGRTIMGSCSLEDEHTPYDIGRQMLGVKLQ-GKVQSAFKWTLQW........
A0A1X9JQL5_9ALPC/2880-3167             GVWLGDQVYAPRHVIASDTTRV.VDYETEQNLVRSHNFSIS...RG...NSFLTVKGFRFEGCNVV..INVAEVNPLTP.EYKFDTLKPGDNFNILACYDGIPSGVYGVTLRYNSTIKGSFVNGTCGSPGYVVSNGVIKFCYLHQMELGSGAHVGSDFTGKMYGGYQDQAKVQIEGANRLITENVVAFFYAALFNG.......ERWWCS...KSSTCITNFNSWAAENNFTQLAATDV....FNLVASKTGVSVEQILAAIIT.YSKGFGHRTLLGYASINDEYTITEVMQQMFGVQLQSGKLKRVFEGFT--lf......
A0A0K2RVJ3_9BETC/3310-3597             GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMQGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNN.......CNWFVQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLVKGIVCW........
R1A_BCHK4/3320-3610                    GLWLDNTVWCPRHIMCPADQLTdPNYDALLISKTNHSFIVQ...KHigaQANLRVVAHSMVGVLLK..LTVDVANPSTP.AYTFSTVKPGASFSVLACYNGKPTGVFTVNLRHNSTIKGSFLCGSCGSVGYTENGGVINFVYMHQMELSNGTHTGSSFDGVMYGAFEDKQTHQLQLTDKYCTINVVAWLYAAVLNG.......CKWFVK...PTRVGIVTYNEWALSNQFTEFVGTQS....IDMLAHRTGVSVEQMLAAIQS.LHAGFQGKTILGQSTLEDEFTPDDVNMQVMGVVMQSG-VKRISYGFIHW........
#=GR R1A_BCHK4/3320-3610         SS    EEEETTEEEEEGGGGS-CCGTSS--HHHHHHT--GGGEEEE...E-SSS-EEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEEEETTEEEEE-TTS-BGGG--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHHTTB------HH....HHHHHHHHT--HHHHHHHHHH.HHH--TT--BTTBSS----S-HHHHHHHH--XXXXXX-XXXXXXXXXXX........
H9BR24_9NIDO/2490-2781                 GLWLHDTIYVPRHILGKYMA--.SQWQDVVNLAECRDFVIFs.pLQ...GVNLTVTSVRMQGAVLQ..LKVHAKNLKTP.AYKFERARPGDPMTIACAYDGIVRSIYHVVLQNNGLIFGSFLNGACGGVGYTIKGTTLIFYYMHHIEFSNRTHGGSTLDGHFYGDYVDEERAQHIPQMAMITDNVLAHIYTHLLTLt....tkPNW-LA...STEISVAEFNEWAQNNSYTSYPGSKSnqdyLEALAATTRVSVLRCLATIVK.LHANWGDASILGYNDFECDMTPEMVYNQ-APINLQAN-YTKLFSS----lawi....
R1AB_SARS2/3292-3582                   GLWLDDVVYCPRHVICTSEDMLnPNYEDLLIRKSNHNFLVQ...AG...NVQLRVIGHSMQNCVLK..LKVDTANPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTITVNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCASLKElLQNGMNGRTILGSALLEDEFTPFDVVRQCSGVTFQSA-VKRTIKGTHHW........
#=GR R1AB_SARS2/3292-3582        SS    EEEETTEEEEEGGGGS-TTGGGS--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.EEEE----TT-EEEEEEEETTEEEEEEEEEB-TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEEETTSEEEEE-TTS-BSTT--SSSSS-------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHHTTB----HHHHH..HTHHHHHHHT--HHHHHHHHHHHHHH--TT--BTTBSS---S--HHHHHHHHHTGGGXXX-XXXXXXXXXXX........
B8Q8S4_SARS/3269-3559                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A0A0U1WHG1_9ALPC/2844-3130             GVWLGDEVYCPRHVIAENTTTL.IDYDKAFSLIRLHNFSVS...VG...NVFLGVVSCRMRGALLC..IKVNQANVNTP.NYTFKTLKPGDSFNILACYEGVASGVYGVTLRNNSTVRGSFINGACGSPGYNLVGNTVEFCYFHQLELGSGCHVGSDANGVMYGNFDDQPTLQIEGASRLYTANVVSFLYGALLNG.......CNWWLT...SDRLTLEAFNDWATSNDFTTLSSVDM....YTILSAKTGVDVARVLAAIQK.LAKGFGGNKILGYSSLTDEFTAGEVIKQMYGVTLQSSKKSRFL------gnlls...
R1AB_CVMJH/3365-3652                   GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SD...RMSLTVMSYQMQGSLLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVVMRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAILNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDELTPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
R1A_SARS/3269-3559                     GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
#=GR R1A_SARS/3269-3559          SS    EEEETTEEEEEGGGGSSTTGGGS--HHHHHHT--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESSEETT--.EEEE----TT-EEEEEEEETTEEEEEEEEEB-TTS-BE-GTTTTETTEEEEEEETTEEEEEEEEEEEETTSEEEEE-TTS-BSSS--SSSSSTTTTTS-B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHHHTTB----HHHHH..HTHHHHHHHT--HHHHHHHHHHHHHHTTTTS-BTTBSS--SSS-HHHHHHHHTSS----XXXXXXXXXXXXX........
R1A_CVHOC/3275-3562                    GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMRGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVIMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPIQDYIQSVNFLAWLYAAILNN.......CNWFIQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLFKGTVCW........
A0A0U1WHK4_SARS/3269-3559              GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAVLKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A0A0K1YZY7_SARS/3269-3559              GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..vLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
A0A1B3Q5W8_9BETC/3176-3466             GVWLNNYVLCPRHVLCTRDDLVnPDYQRLSMRAANYDFHVS...QN...GLNLRVTGHVMEGALLR..LTVDATNPKTP.AHSFVRVSTGQAISILACYDGIPAGVYTCTLRANGTLRAAFLCGSCGSPGFVMNGKEVQFCYLHQLELPNGTHTGTDMHGAFYGPFEDKQVPQLASPDVTITVNVLAWLYAAVLSG.......ESWFVT...KLGITAAEFNTSAVKYMCQSVTEESLq..vLQPLAAKTGVSVQRMLSSLKVlLSTGFCGKTIMGSCSLEDEHTPYDIGRQMLGVTLQ-SRTQKFVKWAMQW........
A0A240FW17_9ALPC/2594-2878             GLWLGNNVYCPRHVIAEDVTKE.IDYETCFMMMRKNMLEIS...YK...NSLLKVNGVNMKGSLLV..IEVDINNVLTP.DYEFVKFKSGVSFNILVSYDGIPSGVFGVTMRSNGTCKGSFLNGSCGSPGFILRDNKVCFGYMHQMEFNSGVHVGSDMDGNIYGNYKDQPVFQIEGLDVKFADNVIAFLYSALING.......DNWWLT...TDECTVSAFNDWACTNNFTQVEN--N....FGLFENKTGVKVERILYAIRT.YSKGFGNKTVLGFGSLTDEFTSDEIYSQTFGI-LQASKLKSGIKNV---lvt.....
A0A125R5A4_9ALPC/2919-3206             GLWIGDEVICPRHVIASDTSRV.INYENELSSVRLHNFSIA...KG...NVFLGVVSAKYKGVNLV..LKVNQVNPNTP.EHKFKSVKPGDSFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGTLYFVYMHHLELGNGSHVGSNLEGEMYGGYEDQPSMQLEGTNVMSSDNVIAFLYAALING.......ERWFVT...NASMSLESYNAWAKTNSFTEIVSTDA....FNMLAAKTGYSVEKLLECIVR.LNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQSGKVKSLFYPMMT-a.......
A0A0U1WHD1_9ALPC/3132-3419             GIWLGDVVICPRHVIASSTNST.INYEHEYTMMRLHNFSVS...VG...NVFLGINGVTMKGVNLH..IKVNQSNPHTP.AHSFRTLKPGDSFNILACYDGTPAGVYGITLRPNYTIRGSFINGACGSVGYNVVNGQVEFCYLHQLELGSGCHVGSNFDGVMYGAFQDQPSLQIEGADQLVTPNVVAFLYGALLNG.......CNWFLV...NERLTVEAYNEWAHGNGFTDMVGVEC....FTMLAAKTGVDVQRLLAAIQK.LTKGFGGKNILGFTSLTDEFTAAEVIKQMYGVNLQSRRLPSVFNNIM--lv......
R1AB_BC279/3275-3565                   GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
Q06BE1_9BETC/3275-3562                 GLWLDDKVYCPRHVICSASDMTnPDYTNLLCRVTSSDFTVL...FD...RLSLTVMSYQMQGCMLV..LTVTLQNSRTP.KYTFGVVKPGETFTVLAAYNGKPQGAFHVTMRSSYTIKGSFLCGSCGSVGYVLMGDCVKFVYMHQLELSTGCHTGTDFNGDFYGPYKDAQVVQLPVQDYIQSVNFVAWLYAAILNN.......CNWFVQ...SDKCSVEDFNVWALSNGFSQVKSDLV....IDALASMTGVSLETLLAAIKR.LKNGFQGRQIMGSCSFEDELTPSDVYQQLAGIKLQ-SKRTRLVKGIVCW........
A3EXE7_BCHK5/3366-3656                 GLWLDNYVWCPRHVMCPADQLSdPNYDALLVSKTNLSFIVQ...KNvgaPANLRVVGHTMVGTLLK..LAVESANPQTP.AYTFTTVKPGASFSVLACYNGRPTGVFMVNMRQNSTIKGSFLCGSCGSVGYTQEGNVINFCYMHQMELSNGTHTGCSFDGVMYGAFEDRQVHQVQLSDKYCTINIVAWLYAAILNG.......CNWFVK...PNKTGIATFNEWAMSNQFTEFIGTQS....VDMLAHKTGVSVEQLLYAIQT.LHKGFQGKTILGNSMLEDEFTPDDVNMQVMGVVMQSG-VKRISYGLLHW........
R1AB_SARS/3269-3559                    GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
#=GR R1AB_SARS/3269-3559         SS    EEEETTEEEEEGGGGSCTTGGSS--HHHHHHTSTGGGEEEE...ET...TEEEEEEEEEEETTEEE..EEESSEETT--.EEEE----TT-EEEEEEEETTEEEEEEEEEB-TTS-B-SGGGTTETTEEEEEEETTEEEEEEEEEEEETTSEEEEE-TTS-BSSS--SSSSS-TTT--SB-HHHHHHHHHHHHHTT.......--TTGS...SS---HHHHHHHHHHTTB----HHHHH..HTHHHHHHHT--HHHHHHHHHHHHHHTTTTT-BTTBSS--TSS-HHHHHHHSTSSSXX-SXXXXXXXXXXXX........
A0A0F6SKM6_9GAMC/2837-3125             GLWLGDSIYCPRHVLGKFSG--.DQWGDVLNLANNHEFEVV..tGN...GVTLSVVSRRLKGAVLI..LQTAIVNADTP.KYKFLKANCGDSFTIACSYGGIVIGLYPVTMRSNGTIRASFLAGACGSVGFNIEKGVVNFYYMHHLELPNALHTGTDLMGEFYGGYIDEEVAQKVQPDKLVTNNILAWLYAAIISVressfstPKW-LE...STTVSIEDYNKWAVDNGFTSFVSCTA....ITKLSAITGVDVCKLLRTIMV.KSAQWGSEPILGQYNFEDEMTPESVFNHVGGVRLQSS----VVKRAAS-w.......
R1AB_BC512/3041-3328                   GLWLGDTVICPRHVIASNTTNV.IDYDHAMSLVRLHNFSIS...SG...NMFLGVISASMRGTLLH..IKVNQSNVNTP.NYTYKVLKPGDSFNILACYDGSAAGVYGVNMRTNYTIRGSFISGACGSPGYNINNGVVEFCYMHHLELGSGCHVGSDMDGTMYGKYEDQPTLQIEGASNLVTENVCSWLYGALING.......DRWWLS...SVSVGVDTYNEWALRNGMTALKNVDC....FSLLVAKTGVDVGRLLASIQK.LHGNFGGKSILGCTSLCDEFTLSEVVKQMYGVTLQSGKVSRAFRNAS--iv......
T2B9I2_MERS/3276-3566                  GLWLDNTVWCPRHVMCPADQLSdPNYDALLISMTNHSFSVQ...KHigaPANLRVVGHAMQGTLLK..LTVDVANPSTP.AYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNG.......CAWFVK...PNRTSVVSFNEWALANQFTEFVGTQS....VDMLAVKTGVAIEQLLYAIQQ.LYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQSG-VRKVTYGTAHW........
R9QTB2_SARS/3261-3551                  GLWLDDTVYCPRHVICTAEDMLnPNYEDLLIRKSNHSFLVQ...AG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
R1AB_CVMA5/3362-3648                   GLWLDDKVYCPRHVICSSADMTdPDYPNLLCRVTSSDFCVM...SG...RMSLTVMSYQMQGCQLV..LTVTLQNPNTP.KYSFGVVKPGETFTVLAAYNGRPQGAFHVTLRSSHTIKGSFLCGSCGSVGYVLTGDSVRFVYMHQLELSTGCHTGTDFSGNFYGPYRDAQVVQLPVQDYTQTVNVVAWLYAAIFNR.......CNWFVQ...SDSCSLEEFNVWAMTNGFSSIKADLV....LDALASMTGVTVEQVLAAIKR.LHSGFQGKQILGSCVLEDE-TPSDVYQQLAGVKLQ-SKRTRVIKGTCCW........
#=GR R1AB_CVMA5/3362-3648        SS    EEEETTEEEEEGGGG-SXXS-SS--HHHHHHH--GGGEEEE...ET...TEEE-EEEEEEETTEEE..EEESS--TT--.SEEE----TT-EEEEEEEETTEEEEEEEEE--TTS-B-----TT-TT-EEEEEETTEEEEEEEEEEEEETTEEEEE-TTS-BSSS--SSSS--------B-HHHHHHHHHHHHHTT.......--TT--...S----HHHHHHHHTTTTB------HH....HHHHHHHHTS-HHHHHHHHHH.HTT--TTS-BTTBSS---S--HHHHHHHHT-XXXX-XXXXXXXXXXXXX........
A0A0U1WHG0_SARS/3264-3554              GLWLDDTVYCPRHVVCTVEDMLnPNYEDLLIRKSNHSFLVQ...TG...NVQLRVIGHSMQNCLLR..LKVDTSNPKTP.KYKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNYTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTITLNVLAWLYAAVING.......DRWFLN...RFTTTLNDFNLVAMKYNYEPLTQDHVd..iLGPLSAQTGIAVLDMCAALKElLQNGMNGRTILGSTILEDEFTPFDVVRQCSGVTFQ-GKFKKIVKGTHHW........
#=GC SS_cons                           EEEETTEEEEEGGGGSSTTGSSS--HHHHHHTSTGGGEEEE...ETSSSTEEEEEEEEEEETTEEE..EEESSEETT--.SEEE----TT-EEEEEEEETTEEEEEEEEEB-TTS-BESGCCTTETTEEEEEEETTEEEEEEEEEEEETTSEEEEE-TTS-BCGG--SSSSSTTTTTSSB-HHHHHHHHHHHHHTT.......--TTGS...SC---HHHHHHHHHTTTB---SHHHHH..HHHHHHHHHTS-HHHHHHHHHHHHCCTTTTS-BTTBSS--TSS-HHHHHHHHTTSCGX-SXXXXXXXXXXXX........
#=GC seq_cons                          GLWLsDpVaCPRHVIsossshs.ssY-shLsphssHsFsVp...ps...sspLsVlutpMpGshLh..LpVspsNPpTP.cYpFtslKPGpoFolLACYsGpPsGVYtVsMRsNtTIKGSFLsGoCGSVGYslpsssVpFsYMHplELusGsHsGoDh-GshYGsapDppshQltssDphhTsNVlAWLYAAllNG.......spWFls...sspsol-sFNtWAhsNsFoslsusps....lshLAApTGVsVpclLAAIpc.LpsGFsG+sILGpssLEDEFTPp-VhpQhhGVsLQuuKhpplhpshhp.........
//
DBGET integrated database retrieval system