#=GF ID   Phage_Hfq
#=GF AC   PF23874.2
#=GF DE   Hfq-like protein
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   VOG01715
#=GF GA   24.20 24.20;
#=GF TC   25.10 54.40;
#=GF NC   23.70 20.50;
#=GF BM   hmmbuild  HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 8 -E 1000 -Z 90746521 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0010
#=GF DR   INTERPRO; IPR056480;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This entry represents a phage protein that contains a central
#=GF CC   Hfq-like domain. This suggests that this protein may have an RNA
#=GF CC   binding function. AlphaFold prediction suggests a confident
#=GF CC   homohexameric structure.  This entry represents a hypothetical
#=GF CC   protein found in several mycobacteriophages, including Bxz1,
#=GF CC   Mangeria, Derek, DrPhinkDaddy, Phusco and Jedediah. The proteins
#=GF CC   are typically around 155 amino acids in length.
#=GF SQ   8
#=GS A0A2P1JXT9_9CAUD/2-67    AC A0A2P1JXT9.1
#=GS B5LJF6_9CAUD/30-129      AC B5LJF6.1
#=GS A0A7D5KB35_9CAUD/7-104   AC A0A7D5KB35.1
#=GS M9MUG6_9CAUD/22-116      AC M9MUG6.1
#=GS A0A249XSM1_9CAUD/4-103   AC A0A249XSM1.1
#=GS A0AAE7XEK1_9CAUD/30-129  AC A0AAE7XEK1.1
#=GS A0A1C9EHH0_9CAUD/26-125  AC A0A1C9EHH0.1
#=GS Q853B4_BPMBZ/26-125      AC Q853B4.1
A0A2P1JXT9_9CAUD/2-67               pe-----------------------------.-----DYVGFVTGLDHAWVQLCLTGKDDNLTATIIQV.GHITGIKETGRQLRDLSDSDVDRITTYGS---vys
B5LJF6_9CAUD/30-129                 ..SDVNIGLRNDQIFQRYLVRRIFREVEFRIvETDGTEHVGYITGFDDRCIQMSITPLTDIDAPRAVLVfWPLRRIEETGGKVDDLPSDQRQAIRSYSHALR...
A0A7D5KB35_9CAUD/7-104              ..ERINLGLEGNQVLQKYLAKKSVEMAELRF.ECNVASYTGFVTGLDQEWVKLTSTDSEDNLNPILLRL.DSVNSVSETGRRMYDMGRQDAEQIKAFTGLFR...
M9MUG6_9CAUD/22-116                 ..QGFTIALEGDEGFQKFLARKIELGAQLEF.SVPGWDVTGFVTGIDSQWLQVSTVPS---LEPVQIRI.GSVRYVRDTGRRLEDLKSEDAAEVRKYARAIT...
A0A249XSM1_9CAUD/4-103              ..SDVNIGLKNDQIFQRYLVRRIFREVEFKItEPDGTSHVGYITGFDDKCIQMSITPVTDIDDPRAVLVfWPLRRIEETGGKVDDLEPDQRSKIRSYSHALR...
A0AAE7XEK1_9CAUD/30-129             .d-NVNIGLDGDQIFQRYLVRRIYREVEFRVvETDGTSHIGYITGFDERCLQLSETPLTDIDDPRAVLIfWPIRRIEETGGKVDDLASDQRSKIRSYSHALR...
A0A1C9EHH0_9CAUD/26-125             .g-DIDIGLKNDQIMQRYLVRRIHREVEFTIkEFDGDTVTGFITGFDDKCIQMSTTPRHDADEPTSVLIfWPIRKITETGRRIDALEHEHRTKIRSYSHALR...
Q853B4_BPMBZ/26-125                 .g-DIDIGLKNDQIMQRYLVRRIHREVEFTIkEMDGDTVTGFITGFDDKCIQMSTTPRNSAEEPMSVLLfWPIRKITETGRKITDLEHEHRTKIRSYSHALR...
#=GC seq_cons                       ...clsIGLcsDQIhQRYLVRRIaREVEFclhEsDGsoasGFITGFD-+ClQhSpTPpsDh--PpuVLlFWPlR+IcETGR+l-DLps-cRs+IRSYSHALR...
//