GenomeNet

Database: Pfam
Entry: RNA_pol_inhib
LinkDB: RNA_pol_inhib
Original site: RNA_pol_inhib 
#=GF ID   RNA_pol_inhib
#=GF AC   PF16857.7
#=GF DE   RNA polymerase inhibitor
#=GF AU   Eberhardt R;0000-0001-6152-1369
#=GF SE   PDB:2lmc
#=GF GA   27.00 27.00;
#=GF TC   34.40 45.40;
#=GF NC   26.90 23.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   20133868
#=GF RT   T7 phage protein Gp2 inhibits the Escherichia coli RNA
#=GF RT   polymerase by antagonizing stable DNA strand separation near the
#=GF RT   transcription start site.
#=GF RA   Camara B, Liu M, Reynolds J, Shadrin A, Liu B, Kwok K, Simpson
#=GF RA   P, Weinzierl R, Severinov K, Cota E, Matthews S, Wigneshweraraj
#=GF RA   SR;
#=GF RL   Proc Natl Acad Sci U S A. 2010;107:2247-2252.
#=GF RN   [2]
#=GF RM   22819324
#=GF RT   Structural and mechanistic basis for the inhibition of
#=GF RT   Escherichia coli RNA polymerase by T7 Gp2.
#=GF RA   James E, Liu M, Sheppard C, Mekler V, Camara B, Liu B, Simpson
#=GF RA   P, Cota E, Severinov K, Matthews S, Wigneshweraraj S;
#=GF RL   Mol Cell. 2012;47:755-766.
#=GF RN   [2]
#=GF RM   24218560
#=GF RT   Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase
#=GF RT   involves misappropriation of sigma70 domain 1.1.
#=GF RA   Bae B, Davis E, Brown D, Campbell EA, Wigneshweraraj S, Darst
#=GF RA   SA;
#=GF RL   Proc Natl Acad Sci U S A. 2013;110:19772-19777.
#=GF DR   INTERPRO; IPR016412;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This bacteriophage protein inhibits the bacterial host RNA
#=GF CC   polymerase by interacting with the RpoC subunit and inhibiting
#=GF CC   the formation of a promoter complex [1-3].
#=GF SQ   95
#=GS A0A172JFX4_9CAUD/31-76  AC A0A172JFX4.1
#=GS A0A2P1CKX4_9CAUD/23-69  AC A0A2P1CKX4.1
#=GS F0V6X7_9CAUD/9-53       AC F0V6X7.1
#=GS W6Q7F0_9CAUD/6-51       AC W6Q7F0.1
#=GS D0Q191_9CAUD/1-40       AC D0Q191.1
#=GS A0A2Z4QIN7_9CAUD/2-42   AC A0A2Z4QIN7.1
#=GS W6PPG0_9CAUD/6-51       AC W6PPG0.1
#=GS A0A1B0TRA2_9CAUD/6-51   AC A0A1B0TRA2.1
#=GS B3VCZ0_9CAUD/2-47       AC B3VCZ0.1
#=GS A0A2S1GTE3_9CAUD/13-58  AC A0A2S1GTE3.1
#=GS Q858M6_9CAUD/14-60      AC Q858M6.1
#=GS E1XU91_9CAUD/30-76      AC E1XU91.1
#=GS A0A4Y5TWH7_9CAUD/2-47   AC A0A4Y5TWH7.1
#=GS A0A059VJN4_9CAUD/8-52   AC A0A059VJN4.1
#=GS U5P433_9CAUD/14-60      AC U5P433.1
#=GS A0A2U7NJP5_9CAUD/2-50   AC A0A2U7NJP5.1
#=GS A0A5B9N7L1_9CAUD/6-51   AC A0A5B9N7L1.1
#=GS B3VCU1_9CAUD/6-51       AC B3VCU1.1
#=GS A0A0E3M330_9CAUD/47-92  AC A0A0E3M330.1
#=GS G0YQ54_9CAUD/2-48       AC G0YQ54.1
#=GS A0A5B9NEA5_9CAUD/2-47   AC A0A5B9NEA5.1
#=GS A0A3G8F0J0_9CAUD/14-60  AC A0A3G8F0J0.1
#=GS A0A3S7N8P4_9CAUD/6-51   AC A0A3S7N8P4.1
#=GS A0A5P8NKF2_9CAUD/2-48   AC A0A5P8NKF2.1
#=GS A0A2Z5H4D8_9CAUD/13-59  AC A0A2Z5H4D8.1
#=GS B6Z9F4_9CAUD/14-60      AC B6Z9F4.1
#=GS A0A5B9NFS7_9CAUD/6-51   AC A0A5B9NFS7.1
#=GS A0A0E3M2X6_9CAUD/30-75  AC A0A0E3M2X6.1
#=GS F8R4Q9_9CAUD/2-47       AC F8R4Q9.1
#=GS A0A1S6KVH5_9CAUD/6-51   AC A0A1S6KVH5.1
#=GS A0A481S2G4_9CAUD/34-80  AC A0A481S2G4.1
#=GS A0A192YC04_9CAUD/22-68  AC A0A192YC04.1
#=GS A0A5P8PKQ3_9CAUD/2-47   AC A0A5P8PKQ3.1
#=GS A0A088FBS1_9CAUD/14-60  AC A0A088FBS1.1
#=GS A0A5P1KKN0_9CAUD/2-47   AC A0A5P1KKN0.1
#=GS A0A172JGC9_9CAUD/23-68  AC A0A172JGC9.1
#=GS Q3YJZ0_BPK1F/6-51       AC Q3YJZ0.1
#=GS A0A1J0MEQ9_9CAUD/13-60  AC A0A1J0MEQ9.1
#=GS F1D007_9CAUD/4-56       AC F1D007.1
#=GS VRPI_BPT7/14-60         AC P03704.1
#=GS VRPI_BPT7/14-60         DR PDB; 4LLG M; 15-60;
#=GS VRPI_BPT7/14-60         DR PDB; 4LLG N; 15-60;
#=GS VRPI_BPT7/14-60         DR PDB; 4LK0 M; 14-60;
#=GS VRPI_BPT7/14-60         DR PDB; 4LK0 N; 14-60;
#=GS VRPI_BPT7/14-60         DR PDB; 2LMC A; 34-80;
#=GS VRPI_BPT7/14-60         DR PDB; 2WNM A; 34-80;
#=GS A0A250KAC2_9CAUD/8-54   AC A0A250KAC2.1
#=GS B3VCI7_9CAUD/14-60      AC B3VCI7.1
#=GS B3FYI5_9CAUD/6-51       AC B3FYI5.1
#=GS A0A0A0YV77_9CAUD/2-42   AC A0A0A0YV77.1
#=GS B4YQE8_9CAUD/22-68      AC B4YQE8.1
#=GS A0A219YHD7_9CAUD/29-74  AC A0A219YHD7.1
#=GS A0A0E3M1G6_9CAUD/30-75  AC A0A0E3M1G6.1
#=GS V5YTN4_9CAUD/12-52      AC V5YTN4.1
#=GS A0A5Q2WBP2_9CAUD/2-47   AC A0A5Q2WBP2.1
#=GS A0A3G8F5Q9_9CAUD/2-47   AC A0A3G8F5Q9.1
#=GS A0A2L0HPG7_9CAUD/6-51   AC A0A2L0HPG7.1
#=GS A0A0N7J838_9CAUD/13-59  AC A0A0N7J838.1
#=GS A0A482MGI6_9CAUD/6-51   AC A0A482MGI6.1
#=GS A0A5J6TAW5_9CAUD/6-51   AC A0A5J6TAW5.1
#=GS W6PJJ3_9CAUD/6-51       AC W6PJJ3.1
#=GS A0A2D0PD39_9CAUD/14-60  AC A0A2D0PD39.1
#=GS A0A2D0YKF7_9CAUD/4-56   AC A0A2D0YKF7.1
#=GS A0A0K2Z0H7_9CAUD/2-47   AC A0A0K2Z0H7.1
#=GS A0A0K2FGU8_9CAUD/3-48   AC A0A0K2FGU8.1
#=GS A0A2S1GSX2_9CAUD/14-60  AC A0A2S1GSX2.1
#=GS A0A170PBB6_9CAUD/8-52   AC A0A170PBB6.1
#=GS Q778L9_BPT3/6-51        AC Q778L9.1
#=GS A0A5B9NB28_9CAUD/31-76  AC A0A5B9NB28.1
#=GS A0A2D2W5W2_9CAUD/15-61  AC A0A2D2W5W2.1
#=GS Q859G8_9CAUD/8-52       AC Q859G8.1
#=GS A0A678ZNY6_9CAUD/1-47   AC A0A678ZNY6.1
#=GS T1PU70_9CAUD/6-51       AC T1PU70.1
#=GS A0A2S1PDI1_9CAUD/2-42   AC A0A2S1PDI1.1
#=GS A0A172JG92_9CAUD/6-51   AC A0A172JG92.1
#=GS B3VCN5_9CAUD/14-60      AC B3VCN5.1
#=GS A0A385IFS6_9CAUD/5-52   AC A0A385IFS6.1
#=GS A0A289ZHU7_9CAUD/6-51   AC A0A289ZHU7.1
#=GS A0A2D3QNX2_9CAUD/12-57  AC A0A2D3QNX2.1
#=GS A0A1A8YFI6_9CAUD/6-51   AC A0A1A8YFI6.1
#=GS A0A0F7LDR5_9CAUD/2-47   AC A0A0F7LDR5.1
#=GS E9KIE8_9CAUD/2-42       AC E9KIE8.1
#=GS A0A6B9RGU8_9CAUD/14-60  AC A0A6B9RGU8.1
#=GS A0A2S1PGW0_9CAUD/2-42   AC A0A2S1PGW0.1
#=GS A0A514U696_9CAUD/29-74  AC A0A514U696.1
#=GS A0A5J6DBB4_9CAUD/13-59  AC A0A5J6DBB4.1
#=GS A0A1B2AN88_9CAUD/9-49   AC A0A1B2AN88.1
#=GS Q9T135_9CAUD/30-75      AC Q9T135.1
#=GS A0A346NSV9_9CAUD/1-30   AC A0A346NSV9.1
#=GS A0A2K9VGY7_9CAUD/32-77  AC A0A2K9VGY7.1
#=GS A0A1I9SEC4_9CAUD/12-57  AC A0A1I9SEC4.1
#=GS E5L7C7_9CAUD/14-60      AC E5L7C7.1
#=GS A0A088F630_9CAUD/30-75  AC A0A088F630.1
#=GS F1D0F1_9CAUD/4-56       AC F1D0F1.1
#=GS A0A384X1C8_9CAUD/8-53   AC A0A384X1C8.1
#=GS I6Q984_9CAUD/14-60      AC I6Q984.1
#=GS A0A3Q9I5B0_9CAUD/6-51   AC A0A3Q9I5B0.1
#=GS A0A2K9VK20_9CAUD/14-60  AC A0A2K9VK20.1
#=GS A0A2D0Z2X4_9CAUD/4-56   AC A0A2D0Z2X4.1
#=GS K4NXN2_9CAUD/23-69      AC K4NXN2.1
#=GS A0A2H1UL39_9CAUD/14-60  AC A0A2H1UL39.1
A0A172JFX4_9CAUD/31-76             .QKYLLTIEGN.TESFEIPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
A0A2P1CKX4_9CAUD/23-69             .RKFWATVQTA.EHSYEMPIYAVSLEEATELAERQYVPA.GFEVIRVRPC........
F0V6X7_9CAUD/9-53                  .KRFEAELVGK.FTSSWVPVWARNVDEALEAAEMEYGED.--NVGRVRPK........
W6Q7F0_9CAUD/6-51                  .QKYIVELEGR.VQSFEVPVYAKSLDEATLKSQE-YEDA.GFVVGRIYPE........
D0Q191_9CAUD/1-40                  .----------.---MEVPVFAEDIGQAAEWAEEAYESQ.GYKVNRIR--eardwepv
A0A2Z4QIN7_9CAUD/2-42              .KLFKAEVGNE.----WVPIYAKDLDEALALAEEEYGAA.--AVGRVRPE........
W6PPG0_9CAUD/6-51                  .KKYIVELEGR.VQSFEVPLYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A1B0TRA2_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLDEATLKSQE-YEDA.GFVVGRIRPE........
B3VCZ0_9CAUD/2-47                  .QKFVVTVETA.NASYELPVHAGSLDEALEVAEAEYEEL.G-QVTRVRPD........
A0A2S1GTE3_9CAUD/13-58             .KKFFVTIENA.KESFEVPVFAIDIEDAQAQAVL-YEDA.GFEVVRIRPE........
Q858M6_9CAUD/14-60                 .KKFWATVESF.EHSFEVPIYAETLDEAVELAEWQYVPA.GFEVTRVRPC........
E1XU91_9CAUD/30-76                 .KKFWATVESS.EHSFEVPVYAETLDEALELAEWQYVQA.GFEVTRVRPC........
A0A4Y5TWH7_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A059VJN4_9CAUD/8-52              .KLFKATVKFR.GEMQEVPIWAESIETALEVADLEYGED.--NVYRLRPE........
U5P433_9CAUD/14-60                 .KKFFATVEGQ.GQSFEVPVFATSLEEANELAEWQYVPA.GFAVTRIRPD........
A0A2U7NJP5_9CAUD/2-50              .KGFKAQVKQQ.GEIEEVTIYAVDIDDALEKAERAFGPQ.--NVTRVR--tmvapd..
A0A5B9N7L1_9CAUD/6-51              .KKYIVELEGR.VQSFDVPVYAKSLDEATLKAQE-YEDA.GFVVGRIRPE........
B3VCU1_9CAUD/6-51                  .KKYIVELEGR.VKSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A0E3M330_9CAUD/47-92             .QKYLLTIEGN.TESFEVPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
G0YQ54_9CAUD/2-48                  .KRFIAEVETQ.THAFEVPVYAETLEEANEKAEAEYVPA.GFAVTRVRPH........
A0A5B9NEA5_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A3G8F0J0_9CAUD/14-60             .KKFFATVEGQ.GQSFEVPVFATSLEEANELAEWQYVPA.GFAVTRIRPD........
A0A3S7N8P4_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKAQE-YEDA.GFVVGRIHPE........
A0A5P8NKF2_9CAUD/2-48              .KHFVVEVETQ.THTFEVPVYAETIEEAHDKAEAEYVPA.GFAVTRVRPN........
A0A2Z5H4D8_9CAUD/13-59             .KKYFVTLSYV.DGELEVPVFAGSLEEAHDLATFKYTPV.GFEVLRVRPA........
B6Z9F4_9CAUD/14-60                 .KKFFATVEGQ.GQSFEVPVFATSLEEANELAEWQYVPA.GFAVTRIRPD........
A0A5B9NFS7_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A0E3M2X6_9CAUD/30-75             .QKYLLTIEGN.TESFEVPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
F8R4Q9_9CAUD/2-47                  .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A1S6KVH5_9CAUD/6-51              .KKYIVELEGR.VQSFEVPLYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A481S2G4_9CAUD/34-80             .KKFWATVESS.EHSFEVPIYAETLDEALELAEWQYVPA.GFEVTRVRPC........
A0A192YC04_9CAUD/22-68             .KKFVVSLEGS.AHAIEVPIYAKSLDEALELAEWTYTEA.GFEVTRVRPA........
A0A5P8PKQ3_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A088FBS1_9CAUD/14-60             .KKFRATVESS.EHSFEVPIYAETLDEAVELAEWQYVPA.GFEVTRVRPC........
A0A5P1KKN0_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A172JGC9_9CAUD/23-68             .KKYIVELEGR.VQSFEVPVYAKSLDEATLKSQE-YEDA.GFVVGRIRPE........
Q3YJZ0_BPK1F/6-51                  .KKYIVELEGR.VQSFEVPLYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A1J0MEQ9_9CAUD/13-60             .KKFFVTIECS.SQSFEVPVFAQDLDTALKLAEWQYEADrRFAVTRVRPD........
F1D007_9CAUD/4-56                  .KKYIVHIQLV.DTEMEVPVFAEDIGQAAEWAEEAYESQ.GYKVNRIR--eardwepv
VRPI_BPT7/14-60                    .KKFWATVESS.EHSFEVPIYAETLDEALELAEWQYVPA.GFEVTRVRPC........
#=GR VRPI_BPT7/14-60         SS    .EEEEEEEEES.SEEEEEEEEESSHHHHHHHHHHCTGGG.TSEEEEEEEE........
A0A250KAC2_9CAUD/8-54              .KKFLVTVETT.LGETEVPVFAETLDEALDVAELKYIPA.GLAVTRVRPE........
B3VCI7_9CAUD/14-60                 .KKFFATVEGQ.GQSFEVPVFAASLEEANELAEWQYVPA.GFAVTRIRPD........
B3FYI5_9CAUD/6-51                  .QKYLLTIEGN.TESFEVPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
A0A0A0YV77_9CAUD/2-42              .KLFKAEVGNE.----WVPIYAKDLDEALALAEEEYGAA.--AVGRVKPE........
B4YQE8_9CAUD/22-68                 .KKFIVHLQGS.SSEIEVPVYAKSLDEALEVAEWTYQEA.GFEIARVRPA........
A0A219YHD7_9CAUD/29-74             .QKFVVTVETA.NASYELPVHAGSLEEALEVAESEYEEL.G-QVTRVRPD........
A0A0E3M1G6_9CAUD/30-75             .QKYLLTIEGN.TESFEIPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
V5YTN4_9CAUD/12-52                 .KLFKAEVHGQ.----WVPVWARNVDEALEAAELEYGPE.--NVGRVR--qe......
A0A5Q2WBP2_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A3G8F5Q9_9CAUD/2-47              .QKFVVTVESA.NASYELPVHAGSLEEALEVADAEYEEL.G-QVTRVRPD........
A0A2L0HPG7_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A0N7J838_9CAUD/13-59             .KKFLVLVESA.TMSHEVPVYVTSLEEATELAEWQYVPA.GFAVTRVRPD........
A0A482MGI6_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A5J6TAW5_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATMKSQE-YEDA.GFVVGRIRPE........
W6PJJ3_9CAUD/6-51                  .KKYIVELEGR.VQSFEVPVYAKSLDEATLKSQE-YEDA.GFVVGRIRPE........
A0A2D0PD39_9CAUD/14-60             .KKFFVTIEGS.SQSLEVPVYAVNLEEAQALAEWTYVPA.GFEVTRIRPE........
A0A2D0YKF7_9CAUD/4-56              .KKYIVHIQLV.DTEMEVPVFAEDIGQAAEWAEEAYESQ.GYKVNRIR--eardwepv
A0A0K2Z0H7_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A0K2FGU8_9CAUD/3-48              .QQFKVTVEGA.TMSVELPIEADSLEHALELAEAEYESI.G-MVTRVRPV........
A0A2S1GSX2_9CAUD/14-60             .KRYIATIESA.YGSIDVPVYAESLEEALELAEWQYVPA.GYVVARVRPE........
A0A170PBB6_9CAUD/8-52              .KLFKATVKVR.GEIEEVPVWADSIETALEVVDAEYGED.--NVYRLRPE........
Q778L9_BPT3/6-51                   i-KYLLTMEGN.TESFEVPVFARSLEEATLQAEQ-YEDA.GFVVTRIRPE........
A0A5B9NB28_9CAUD/31-76             .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A2D2W5W2_9CAUD/15-61             .KGFIATVESA.EQSFDVPIYAKDLDEALELAEWQYVPA.GFLVARVRPK........
Q859G8_9CAUD/8-52                  .KLFKATVKFR.GEMQEVPIWAESIETALEVADLEYGED.--NVYRLRPE........
A0A678ZNY6_9CAUD/1-47              m-KFWVTLETV.HQSLEVPVYAGTLEEALQVAEDEYMEL.GVCATRVRPD........
T1PU70_9CAUD/6-51                  i-KYLLTMEGN.TESFEVPVFARSLEEATLQAEQ-YEDA.GFVVTRIRPE........
A0A2S1PDI1_9CAUD/2-42              .KLFKAEVGNE.----WVPIYAKDLDEALALAEEEYGAA.--AVGRVKPE........
A0A172JG92_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
B3VCN5_9CAUD/14-60                 .KKFFATVEGQ.GQSFEVPVFATSLEEANELAEWQYVPA.GFAVTRIRPD........
A0A385IFS6_9CAUD/5-52              .KKFYVTIQSPlGGECEFPMYAESLDEATKQADFEYEQA.GFPVSRIRPE........
A0A289ZHU7_9CAUD/6-51              .QKYLLTIEGN.TESFEVPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
A0A2D3QNX2_9CAUD/12-57             .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A1A8YFI6_9CAUD/6-51              .KKYIVELEGR.VQSFEVPLYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A0F7LDR5_9CAUD/2-47              .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
E9KIE8_9CAUD/2-42                  .KLFKAQVGSE.----WVPIYAKDLDEALALAEEEYGAA.--AVGRVKPE........
A0A6B9RGU8_9CAUD/14-60             .KKFWATVESS.EHSFEVPVYAETLDEALELAEWQYVPA.GFEVTRVRPC........
A0A2S1PGW0_9CAUD/2-42              .KLFKAEVGNE.----WVPIYAKDLDEALALAEEEYGAA.--AVGRVKPE........
A0A514U696_9CAUD/29-74             .QKFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A5J6DBB4_9CAUD/13-59             .KKFFATVESA.SQSFEVPVFAETLEEATELAEWQYVPA.GFEVTRVRPQ........
A0A1B2AN88_9CAUD/9-49              .KLFKAEVHGQ.----WVPVWARNVDEALEAAELEYGPE.--NVGRVRPE........
Q9T135_9CAUD/30-75                 .QKYLLTIEGN.TESFEVLVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
A0A346NSV9_9CAUD/1-30              m----------.--------YAESLDEAAKQADFEYEQA.GFPVSRIRPE........
A0A2K9VGY7_9CAUD/32-77             a-KFVVTVETA.NASYELPVHAGSLEEALEVAEAEYEEL.G-QVTRVRPD........
A0A1I9SEC4_9CAUD/12-57             .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
E5L7C7_9CAUD/14-60                 .KKFFATVEGQ.GQSFEVPVFATSLEEANELAEWQYVPA.GFAVTRIRPD........
A0A088F630_9CAUD/30-75             .QKYLLTIEGN.TESFEVPVFARSLEEATLQAEH-YEDA.GFVVTRIRPE........
F1D0F1_9CAUD/4-56                  .KKYIVHIQLV.DTEMEVPVFAEDIGQAAEWAEEAYESQ.GYKVNRIR--eardwepv
A0A384X1C8_9CAUD/8-53              .KKYIVELEGR.VQSFDVPVYAKSLDEATLKAQE-YEDA.GFVVGRIRPE........
I6Q984_9CAUD/14-60                 .KKFWATVESS.EHSFEVPIYAETLDEAVELAEWQYVPA.GFEVTRVRPC........
A0A3Q9I5B0_9CAUD/6-51              .KKYIVELEGR.VQSFEVPVYAKSLEEATLKSQE-YEDA.GFVVGRIRPE........
A0A2K9VK20_9CAUD/14-60             .KKFWATVESS.EHSFEVPIYAETLDEALELAEWQYVPA.GFEVTRVRPC........
A0A2D0Z2X4_9CAUD/4-56              .KKYIVHIQLV.DTEMEVPVFAEDIGQAAEWAEEAYESQ.GYKVNRIR--eardwepv
K4NXN2_9CAUD/23-69                 .RKFWATIQSS.EHSYEMPIYAVSLDEATELAERQYVPA.GFEVIRVRPC........
A0A2H1UL39_9CAUD/14-60             .KKFFVTIEGS.SQSLEVPVYAVNLEEAQALAEWTYVPA.GFEVTRIRPE........
#=GC SS_cons                       .EEEEEEEEES.SEEEEEEEEESSHHHHHHHHHHCTGGG.TSEEEEEEEE........
#=GC seq_cons                      .KKahlplEup.spSaEVPVaAcSLEEAhthAEtpYpsA.GFsVsRlRP-........
//
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