GenomeNet

Database: Pfam
Entry: Soc
LinkDB: Soc
Original site: Soc 
#=GF ID   Soc
#=GF AC   PF16855.11
#=GF DE   Small outer capsid protein
#=GF AU   Eberhardt R;0000-0001-6152-1369
#=GF SE   PDB:3ige
#=GF GA   27.00 27.00;
#=GF TC   27.10 37.90;
#=GF NC   26.30 25.60;
#=GF BM   hmmbuild  HMM.ann SEED.ann
#=GF SM   hmmsearch --cpu 8 -Z 90746521 -E 1000 HMM pfamseq
#=GF TP   Domain
#=GF RN   [1]
#=GF RM   19835886
#=GF RT   Structure of the small outer capsid protein, Soc: a clamp for
#=GF RT   stabilizing capsids of T4-like phages.
#=GF RA   Qin L, Fokine A, O'Donnell E, Rao VB, Rossmann MG;
#=GF RL   J Mol Biol. 2010;395:728-741.
#=GF DR   INTERPRO; IPR031743;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This protein attaches to and stabilises the bacteriophage capsid
#=GF CC   [1].
#=GF SQ   24
#=GS A0A6B9XYG0_9CAUD/3-71  AC A0A6B9XYG0.1
#=GS E3SFB7_BPSP8/2-72      AC E3SFB7.1
#=GS A0A1Z1LXA5_9CAUD/3-75  AC A0A1Z1LXA5.1
#=GS SOC_BPT4/6-79          AC P03715.1
#=GS M1EAL3_BPS16/2-74      AC M1EAL3.1
#=GS A0A482GGZ0_9CAUD/6-79  AC A0A482GGZ0.1
#=GS A0A7M1ICZ0_9CAUD/6-79  AC A0A7M1ICZ0.1
#=GS E3SFB8_BPSP8/3-73      AC E3SFB8.1
#=GS A0A3T0IM54_9CAUD/3-74  AC A0A3T0IM54.1
#=GS A0A7D7EMP5_9CAUD/3-74  AC A0A7D7EMP5.1
#=GS A0A6B9J5X6_9CAUD/2-72  AC A0A6B9J5X6.1
#=GS A0A0A0Q3A8_9CAUD/3-76  AC A0A0A0Q3A8.1
#=GS A0A346FJB4_BPT6/6-79   AC A0A346FJB4.1
#=GS A8R8X9_9CAUD/3-74      AC A8R8X9.1
#=GS W6B2C2_9CAUD/3-75      AC W6B2C2.1
#=GS A0A0B6VTL5_9CAUD/3-74  AC A0A0B6VTL5.1
#=GS A0A2Z5ZCF5_9CAUD/2-75  AC A0A2Z5ZCF5.1
#=GS A0A0K1LN82_9CAUD/2-74  AC A0A0K1LN82.1
#=GS A0A5B9NAD7_9CAUD/2-58  AC A0A5B9NAD7.1
#=GS A0A6B9XZD9_9CAUD/3-62  AC A0A6B9XZD9.1
#=GS A0A7T5QVS9_9CAUD/2-74  AC A0A7T5QVS9.1
#=GS K0G7Y4_9CAUD/3-74      AC K0G7Y4.1
#=GS A0A5B7LF31_9CAUD/2-72  AC A0A5B7LF31.1
#=GS SOC_BPR69/3-74         AC Q7Y5B1.1
A0A6B9XYG0_9CAUD/3-71             .......GYVNIKTFDHT.LPS-GEVKGVEVSVAFKVYSDAHRIAGAHYQIFPSEEPAYADV.VETA..E--DWA----------tknaamfv..
E3SFB7_BPSP8/2-72                 .......GGVNIKTFTHP.AGEGKEVKGVEVSVPFEIYSNEHRIADAHYQTFPSAVAAYTTV.VTDA..--ADW-----------rtknaamfap
A0A1Z1LXA5_9CAUD/3-75             .......GYVNIKTFDHT.T-SEGEVKGKEVSIAFELYSDVHRIANAHYQTFPSEKAAYATV.FEVT..QRDEWIAANEEMFKAT..........
SOC_BPT4/6-79                     .......GYVNIKTFEQK.LDGNKKIEGKEISVAFPLYSDVHKISGAHYQTFPSEKAAYSTV.YEEN..QRTEWIAANEDLWKVT..........
M1EAL3_BPS16/2-74                 ......s-YVNVKTFDHT.-NADGEVKGMEVSVAFKLYSDVHQIAGSHYQLFPSEKAAYSTV.FEED..QRDAWIAKNADMFK--gv........
A0A482GGZ0_9CAUD/6-79             .......GYVNIKTFEQK.LDGNKKIEGKEISVAFPLYSDVHKISGAHYQTFPSEKAAYSTV.YEEN..QRTEWIAANEDLWKVT..........
A0A7M1ICZ0_9CAUD/6-79             .......GYVNIKTFEQK.LDGNKKIEGKEISVAFPLYSDVHKISGAHYQTFPSEKAAYSTV.YEEN..QRTEWIAANEDLWKVT..........
E3SFB8_BPSP8/3-73                 .......GFVNIKTFTHP.AGEGKEVKGVEVSVPFEIYSNEHRIADAHYQTFPSAVAAYTTV.VTDA..--ADW-----------rtknaamfap
A0A3T0IM54_9CAUD/3-74             .......GFVNIKTFTHP.AGEGKEVKGTEVSVPFEIYSNEHRIADSHYQTFPSAVAAYSTV.VTDA..--ADWKTK--------naamftpt..
A0A7D7EMP5_9CAUD/3-74             .......GFVNIKTFTHP.AGEGKEVKGTEVSVLFEIYSNEHRIANAHYQTFPSAVAAYTTV.VTDA..--ADWR----------tknaamftpt
A0A6B9J5X6_9CAUD/2-72             ......a-YVNIKTFDHT.VAGG-EVKGTEVSVDFKVYSNSHRIADARYQTFPSEKPAYSTV.IDDA..--AAWATANAKMF---eav.......
A0A0A0Q3A8_9CAUD/3-76             .......GYVNIKTFDHD.-DYGVAIAGKEVSVAFTVYSDSHRIARAHYQIFPSETPAYATV.IEDTpaGRTAWAASNAAM----fnp.......
A0A346FJB4_BPT6/6-79              .......GYVNIKTFEQK.LDGNKKIEGKEISVAFPLYSDVHKISGAHYQTFPSEKAAYSTV.YEEN..QRTEWIAANEDLWKVT..........
A8R8X9_9CAUD/3-74                 .......GFVNIKTFTHP.AGEGKEVKGTEVSVPFEIYSNEHRIANAHYQTFPSAVAAYTTV.VTDA..--ADWR----------tknaamftpt
W6B2C2_9CAUD/3-75                 .......GYVNVKTFDHQ.TS-AGEVKGKEISVAFELYSDVHRIANAHYQVFPSETPAYSTV.FERN..QRAEWIAANETLFDVT..........
A0A0B6VTL5_9CAUD/3-74             .......GFVNIKTFTHP.AGEGFEVKGVEVSVPFGIYADAHRISGAHYQTFPSAVAAYATV.VTDA..--ADWATKNA------amftpt....
A0A2Z5ZCF5_9CAUD/2-75             ......n-YVNIKTKDRA.VK-DGTIKGQEVSIAFSVYSTAHQIAGTQYHLSLSDTALYTTNkFEDG..QLDAWITFNKKLFEVT..........
A0A0K1LN82_9CAUD/2-74             ......s-YVNIKTFEHT.-NADGVVAAMEVSVAFKLYSDVHRIARSHYQIFPSEKAAYSTV.FEEN..QRDAWIAKNADMFK--gv........
A0A5B9NAD7_9CAUD/2-58             .....ae-----------.------VKGTEVSVAFKVYSDSHRIANAQYQIFPSEKAAYSTV.VDDA..--ATWATTNAKM----feav......
A0A6B9XZD9_9CAUD/3-62             yinlklr-----------.-------SGIEVSVYFTVYSNAHKIAGSFYNLSLSEEPLYSTV.FEKG..QDVEWQKYN-------ievm......
A0A7T5QVS9_9CAUD/2-74             ......s-YVNIKTFDHTtADG--EVKGTEISVAFKLYSDVHRIANAHYQVFPSETPAYATV.FEED..QRDAWVTANENLFK--ae........
K0G7Y4_9CAUD/3-74                 .......GYVNIKTFTRP.AGEGKEVKGMEVSVPFEIYSNEHRIADSHYQIFPSEKAAYSTV.VSDA..--ADWKTK--------naamftpt..
A0A5B7LF31_9CAUD/2-72             ......a-YVNIKTFDHTtADG--EVKGTEVSVAFKVYSDSHRIANAQYQIFPSEKAAYSTV.VDDA..--ATWATTNAK-----mfeas.....
SOC_BPR69/3-74                    .......GYVNIKTFTHP.AGEGKEVKGMEVSVPFEIYSNEHRIADAHYQTFPSEKAAYTTV.VTDA..--ADWR----------tknaamftpt
#=GC seq_cons                     .......GYVNIKTFsHs.hststEVKGpEVSVsFclYSssHRIAsAHYQsFPSEpAAYoTV.h--s....s-WhstNt................
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