GenomeNet

Database: Pfam
Entry: Swi6_N
LinkDB: Swi6_N
Original site: Swi6_N 
#=GF ID   Swi6_N
#=GF AC   PF18530.4
#=GF DE   Swi6 N-terminal domain
#=GF AU   El-Gebali S;0000-0003-1378-5495
#=GF SE   ECOD:EUF04996
#=GF GA   33.80 33.80;
#=GF TC   43.80 41.80;
#=GF NC   25.30 24.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Domain
#=GF CL   CL0123
#=GF RN   [1]
#=GF RM   20635421
#=GF RT   Structure of the amino-terminal domain from the cell-cycle
#=GF RT   regulator Swi6.
#=GF RA   Taylor IA, Goldstone DC, Pala P, Haire LF, Smerdon SJ;
#=GF RL   Proteins. 2010;78:2861-2865.
#=GF DR   INTERPRO; IPR040822;
#=GF DR   SO; 0000417; polypeptide_domain;
#=GF CC   This is a putative DNA binding domain, it comprises four alpha
#=GF CC   helices and five beta strands arranged in a mixed alpha/beta
#=GF CC   fold [1].
#=GF SQ   22
#=GS A0A0C7ND69_9SACH/3-98   AC A0A0C7ND69.1
#=GS J8PZ79_SACAR/3-107      AC J8PZ79.1
#=GS SWI6_KLULA/3-92         AC P40418.1
#=GS G8ZQP4_TORDC/3-109      AC G8ZQP4.1
#=GS Q751Y5_ASHGO/1-95       AC Q751Y5.2
#=GS C5DZ06_ZYGRC/3-110      AC C5DZ06.1
#=GS G0VAS3_NAUCC/3-108      AC G0VAS3.1
#=GS H2ATK5_KAZAF/3-119      AC H2ATK5.1
#=GS J4U1R1_SACK1/3-107      AC J4U1R1.1
#=GS G8BU74_TETPH/4-89       AC G8BU74.1
#=GS A0A7H9AV37_ZYGMR/3-112  AC A0A7H9AV37.1
#=GS A0A7H9HN43_9SACH/3-109  AC A0A7H9HN43.1
#=GS A0A1S7HLZ6_9SACH/3-112  AC A0A1S7HLZ6.1
#=GS A0A1G4JZP4_9SACH/4-99   AC A0A1G4JZP4.1
#=GS J7S4A3_KAZNA/1-114      AC J7S4A3.1
#=GS A0A1X7R4I1_9SACH/3-118  AC A0A1X7R4I1.1
#=GS G0W330_NAUDC/18-116     AC G0W330.1
#=GS A0A1G4MGK2_LACFM/3-100  AC A0A1G4MGK2.1
#=GS A0A1U7EQ80_9SACH/3-112  AC A0A1U7EQ80.1
#=GS G8JMB4_ERECY/2-99       AC G8JMB4.1
#=GS SWI6_YEAST/3-107        AC P09959.1
#=GS SWI6_YEAST/3-107        DR PDB; 2XFV A; 3-107;
#=GS SWI6_YEAST/3-107        DR PDB; 2XFV B; 3-107;
#=GS C5DK52_LACTC/6-99       AC C5DK52.1
A0A0C7ND69_9SACH/3-98              vrelevecvyr----------..-NQQHLVKLEHDSERDLFLVDGFLPLLALQCDEDQSQR-..------.......----GWQS.....RVLQKLDM-NNTNLKDAEWITRDKAWELVELVKLQDAFQGVFDM-d..........
J8PZ79_SACAR/3-107                 .........le--EVVRYLGP..-HNEIPLTLTRDSETGHFLLKHFLPILQQYHDTGNINET..NPDKFP.......--TGEERD.....ELLKHYGIVVTTDDQGELWIELEKCLQLLNMLNLFDLFQDAFEF-e..........
SWI6_KLULA/3-92                    ..rpifkvhkg----------..----DRITFQQRLQDGYVCLDQFIPLLTNLSSFNFHRD-..-----D.......PLVENLDD.....MVTSQFNILIDTDRSGTRWITLQKAHELWDLLQIKD---------ds.........
G8ZQP4_TORDC/3-109                 ...........VVEAYRLIGD..---KVPLTLKKNNDTGYFLLKPFLPLLQQFHSSEGVLEL..DYLNFSh.....eELSVEQED.....ALLSRFGILVDTNDAGEKWITGDKALELLQMLNLLHLFQDEFDF-n..........
Q751Y5_ASHGO/1-95                  ......mveht-------IQR..VVQGKTLRLVKRDSDGYFKLEGFLPHLIAHEFGPDA---..----PE.......PWDAYQED.....ALLAKYGVLIDTDVQYAKWITHSKAQELIELLGWGDAF-------aka........
C5DZ06_ZYGRC/3-110                 ...........VVEVTKLIGE..EGHQVPLTLKRSNETGYFLLKPFLPLLQQLLSGEGDATI..DDVGST.......EIDAQQED.....RILSKYGILVDTDDSNEKWITGEKAFELMQLLNILHLFRENFEKQ...........
G0VAS3_NAUCC/3-108                 ...........IIEVTKVIEDpaSSESVSLTLQRNTETGYFLLRPLVPLLSHYEGKRVNVDQ..----SD.......EVRKEEED.....RLCAKYGILVDTDKDGEKWITSDKVFQLLDMLNLLDLFKDDFDA-l..........
H2ATK5_KAZAF/3-119                 ..........i-TEVTSYIFSndTDVTCPLTLRKNDETGYFQLNSFLPLLKQLHENKTTDSI..NTDQLIedtntvgAISAELQD.....LLLSKYGVLVDTDSDGNKWITQDKAFQLLDMFSILHLFKDKFDTK...........
J4U1R1_SACK1/3-107                 .........le--EVVRYLGA..-HNEIPLTLTRDSETGHFLLKHFLPILQQYHDTGNINET..NPDNFP.......--TDEERN.....KLLTHYGIVVTTDDQGELWIELEKCLQLLNMLNLFDLFQDAFEF-e..........
G8BU74_TETPH/4-89                  vsvsgqfklhd----------..------FTLQRNVDNGYFLLEPVLRLLKTFTYQNVSDD-..------.......--------.....YLLSHYNILVATSADGSKWIPEEKAAQLLEVC-------------dedgklkvffd
A0A7H9AV37_ZYGMR/3-112             ..........v-LEVTKLIGE..QDFQLPLTLKRNNSTGYFLLRPFLPLLQSFNRKNDGNEDssDAKGDE.......ELNNEQED.....EILSQFGILVDTDDQGKKWITSEKAVELLKKLNLFHLFEAELG--sn.........
A0A7H9HN43_9SACH/3-109             ........vve---STRPIGE..---NASLTLKKSVDTGYFLLRPFLPLLQHWSRFNGDCKF..DNVDLSg.....dELGLDQED.....ALLAQFGILVDTNDVGERWITGEKALELLEMLNMKQLFQHLFK--sg.........
A0A1S7HLZ6_9SACH/3-112             ...........VVEVTKYIGE..GEHQTPLTLKRSNETGYFLLKPFLPLLQRLSDTNGEGDA..TIDDVNn.....tEIAVQQED.....RILSKYGILVDTDESNEKWITGEKAFELMQMFDILHPFKEEFESQ...........
A0A1G4JZP4_9SACH/4-99              ..refkracny-------N--..-GQQHLVNMVQDMEKDLFLVDALAPLLAVKCGEEQSRG-..------.......----DWRN.....RVLQKLGILVERDEQGNEWLSRTKTRELLMVLGIQDAFQEFFG--qe.........
J7S4A3_KAZNA/1-114                 ...........MVDVTEFTAD..VGAGVLLTLKRQNQTGYFLLDAFIPILKQLAGDFTGLDI..ELLRDElqn.qgsPLSEPKES.....QLLSRFGVLVDRDVEGRKWITGEKAVQLLDSAKIGHLFKAQLDS-s..........
A0A1X7R4I1_9SACH/3-118             ......vstat-----SYITSqdGSQSFPVTLVRNIDTGYFLLKPLLPLLKQLDEEKQSVDV..EELRHD......tETSSEYDDpealaNLLSRLRLLVDTDENDEKWITGKMAYDVLDRLHILYLFENRFDE-n..........
G0W330_NAUDC/18-116                .........ns--DNNNIDPN..-VGKLSLTLKKDTESGYYLLRPLVSLLAATDNDISGNST..------.......--IEEQED.....KICNKYGILVDTDDAGKKWIMEDKMFHLLDLLNILPLFKDEFPP-d..........
A0A1G4MGK2_LACFM/3-100             ......leeye-----RTTSS..DGGNASLKLVWDSEKDNFLLDSLLPFLASQAGLEGELT-..------.......---SEKYE.....EILQKYSVVVESDDDDQKWTSRAKTWELLKILNFADAFQDIFQD-e..........
A0A1U7EQ80_9SACH/3-112             ...........VVEVTKYIGE..GEHQTPLTLKRSNETGYFLLKPFLPLLQRLVDTNGEGDA..TIDDVNn.....tEIAVQQED.....RLLSKYGILVDTDESNEKWITGEKAFELMQMLDILHLFKEEFESQ...........
G8JMB4_ERECY/2-99                  ..velqlqkvv----------..--DGRVVTLIRRDEDEYFRLEGFLPHLIRHEYGDERVP-..-----N.......HWDHYQED.....LLLAKYGILIETDSKYVKWITNSKAKQLIELLGWGGVFGD-----veeq.......
SWI6_YEAST/3-107                   .........le--EVVRYLGP..-HNEIPLTLTRDSETGHFLLKHFLPILQQYHDTGNINET..NPDSF-.......-PTDEERN.....KLLAHYGIAVNTDDRGELWIELEKCLQLLNMLNLFGLFQDAFEF-e..........
#=GR SWI6_YEAST/3-107        SS    .........EE--EEEEEEST..-TS-EEEEEEEETTT--EESGGGHHHHHHHHHHS-GGG-..-TT---.......---HHHHH.....HHHHHCT---EE-TT--EEE-HHHHHHHHHHTT-CCCCGGGEEE--..........
C5DK52_LACTC/6-99                  ..........y-EHHYDLNGQ..---ATVVKLVRDLNKDSFLVDALVPLLASAANVEKSNG-..------.......----DWRN.....LVLQKFGILVERDGQGNEWISRGKTWELLKILNLHDAYRDVFEE-p..........
#=GC SS_cons                       .........EE--EEEEEEST..-TS-EEEEEEEETTT--EESGGGHHHHHHHHHHS-GGG-..-TT---.......---HHHHH.....HHHHHCT---EE-TT--EEE-HHHHHHHHHHTT-CCCCGGGEEE--..........
#=GC seq_cons                      ................phhsp...ttphsLTLp+ss-oGYFLLcsFLPLLpphpsppsssc..................stppcD.....plLu+aGILV-TDcpGpKWITt-KAhcLLchLslhclFp-.Fc..p..........
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