#=GF ID TTSSLRR
#=GF AC PF12468.11
#=GF DE Type III secretion system leucine rich repeat protein
#=GF AU Gavin OL;
#=GF SE Prosite
#=GF GA 21.90 21.90;
#=GF TC 22.50 21.90;
#=GF NC 21.50 21.50;
#=GF BM hmmbuild HMM.ann SEED.ann
#=GF SM hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP Repeat
#=GF CL CL0022
#=GF RN [1]
#=GF RM 10564523
#=GF RT Salmonella typhimurium leucine-rich repeat proteins are targeted
#=GF RT to the SPI1 and SPI2 type III secretion systems.
#=GF RA Miao EA, Scherer CA, Tsolis RM, Kingsley RA, Adams LG, Baumler
#=GF RA AJ, Miller SI;
#=GF RL Mol Microbiol. 1999;34:850-864.
#=GF DR INTERPRO; IPR032674;
#=GF DR SO; 0001068; polypeptide_repeat;
#=GF CC This domain family is found in bacteria, and is approximately 50
#=GF CC amino acids in length. There are two completely conserved
#=GF CC residues (Y and W) that may be functionally important. This
#=GF CC family consists of leucine-rich repeat proteins involved in type
#=GF CC III secretion.
#=GF SQ 43
#=GS A0A1X1EL27_PANCY/3-64 AC A0A1X1EL27.1
#=GS A0A4Z0KQL1_SALET/107-170 AC A0A4Z0KQL1.1
#=GS A0A068Z9E6_9GAMM/15-65 AC A0A068Z9E6.1
#=GS Q83R64_SHIFL/4-51 AC Q83R64.1
#=GS Q83R64_SHIFL/4-51 DR PDB; 5KH1 A; 22-51;
#=GS A0A516SFS2_9BURK/91-132 AC A0A516SFS2.1
#=GS IPA9_SHIFL/4-48 AC Q8VSC3.2
#=GS IPA9_SHIFL/4-48 DR PDB; 5B0N B; 22-48;
#=GS IPA9_SHIFL/4-48 DR PDB; 5B0T A; 22-48;
#=GS IPA9_SHIFL/4-48 DR PDB; 6K2D B; 22-48;
#=GS IPA9_SHIFL/4-48 DR PDB; 5B0N A; 22-48;
#=GS Q327F7_SHIDS/4-49 AC Q327F7.1
#=GS A0A0H2USC0_SHIFL/7-63 AC A0A0H2USC0.1
#=GS W0I1A6_9GAMM/26-70 AC W0I1A6.1
#=GS A0A068Z9B5_9GAMM/5-65 AC A0A068Z9B5.1
#=GS SLRP_SALTY/107-170 AC Q8ZQQ2.1
#=GS Q327F0_SHIDS/14-70 AC Q327F0.1
#=GS A0A0H2UY03_SHIFL/4-54 AC A0A0H2UY03.1
#=GS A9MJD9_SALAR/107-172 AC A9MJD9.1
#=GS A0A2X4TUK9_SALER/107-172 AC A0A2X4TUK9.1
#=GS A0A2X4TEF0_SALER/1-49 AC A0A2X4TEF0.1
#=GS A0A068Z363_9GAMM/18-65 AC A0A068Z363.1
#=GS A0A3S4E939_SALBN/9-50 AC A0A3S4E939.1
#=GS A0A068Z5Y5_9GAMM/15-65 AC A0A068Z5Y5.1
#=GS A0A068Z6R4_9GAMM/18-65 AC A0A068Z6R4.1
#=GS A0A2U8I533_9GAMM/33-79 AC A0A2U8I533.1
#=GS IPA9_SHIDS/4-48 AC Q326Z6.2
#=GS Q32D09_SHIDS/4-49 AC Q32D09.1
#=GS Q32F09_SHIDS/7-51 AC Q32F09.1
#=GS IPA3_SHIFL/7-51 AC Q83RJ4.1
#=GS IPA3_SHIFL/7-51 DR PDB; 3CVR A; 25-51;
#=GS A0A380PKG6_YERPE/1-60 AC A0A380PKG6.1
#=GS A0A3S4EX46_SALBN/131-174 AC A0A3S4EX46.1
#=GS IPA4_SHIFL/4-54 AC P18009.3
#=GS A0A3N4B6U4_YERPE/1-60 AC A0A3N4B6U4.1
#=GS A0A509D1N4_9ENTR/117-192 AC A0A509D1N4.1
#=GS C5B8F6_EDWI9/17-59 AC C5B8F6.2
#=GS A0A0H2V170_SHIFL/4-49 AC A0A0H2V170.1
#=GS Q327F8_SHIDS/4-54 AC Q327F8.1
#=GS A0A0H2USG1_SHIFL/7-63 AC A0A0H2USG1.1
#=GS A0A3N4B5W9_YERPE/1-60 AC A0A3N4B5W9.1
#=GS E9CQ54_9GAMM/4-65 AC E9CQ54.1
#=GS IPA7_SHIFL/4-49 AC P18014.2
#=GS A0A3S4GD78_SALBN/107-170 AC A0A3S4GD78.1
#=GS A0A068Z9P8_9GAMM/17-65 AC A0A068Z9P8.1
#=GS Q32F07_SHIDS/4-51 AC Q32F07.1
#=GS YOPM_YERPE/8-63 AC P17778.2
#=GS YOPM_YERPE/8-63 DR PDB; 1JL5 A; 1034-1063;
#=GS YOPM_YERPE/8-63 DR PDB; 1G9U A; 34-63;
#=GS E0WV28_9ENTR/18-65 AC E0WV28.1
#=GS Q32I41_SHIDS/4-54 AC Q32I41.1
A0A1X1EL27_PANCY/3-64 .........................................tv---NNHLSSPSFLRANSDSAQQSGNIdgt...paqpQTKEEYLAHWRQWAQEAPVgaGEQRDRAVN......
A0A4Z0KQL1_SALET/107-170 ...........................................IIFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKVAVHYELIWSEWVKEAPAeeAANREEAVQ......
A0A068Z9E6_9GAMM/15-65 ..............................ylrstgdapssss--------------------VSQTATv........pLRPDEYYALWSEWEENAMPgmGEKRDIAVA......
Q83R64_SHIFL/4-51 ...........................................TNNNHRLISNSFSTYSIDTS------..........RAYENYLTHWTEWKNNRIQ..EEQRDIAFQ......
#=GR Q83R64_SHIFL/4-51 SS ...........................................XXXXXXXXXXXXXXXXXX--------..........--SHHHHHHHHHHHHTT--..SSTHHHHHH......
A0A516SFS2_9BURK/91-132 ........................................rhl------------------LEVSQPRTq........pTNNAEYLAEWRDWARQPTP.tHEDRRFA--lh....
IPA9_SHIFL/4-48 ...........................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GEERDEAVS......
#=GR IPA9_SHIFL/4-48 SS ...........................................XXXXXXXXXXXXXXXXX---------..........X-HHHHHHHHHHHHCT--T..T--HHHHHH......
Q327F7_SHIDS/4-49 ...........................................VNNTHSSVSCSPSINSNL--------..........TSNEHYLRILTEWEKNSSP..GEERGIAFN......
A0A0H2USC0_SHIFL/7-63 ...........................................IQVIGSGIMHQINNIHSLTLFSLPVSl.......spSCNEYYLKVWSEWERNGTP..GEQRNIAFN......
W0I1A6_9GAMM/26-70 .....................................vsrppr------------------LTVAEEAS.........gRRQEDYHLIWETWMNNAPPgsLEHRAIA--ce....
A0A068Z9B5_9GAMM/5-65 ....................nnspdfplqtyhhsatdtpssgn-------------------------Vsqt...atvpLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
SLRP_SALTY/107-170 ...........................................IVFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKDAVNYELIWSEWVKEAPAkeAANREEAVQ......
Q327F0_SHIDS/14-70 ...........................................IQAIGSGIMHQINNIYSLTPFSSPMEl.......tpSCNEFYLKAWSEWEKNGTP..GEQRNIAFN......
A0A0H2UY03_SHIFL/4-54 ..........................................a-HNPSFFRSFCGLGCISRLSVEEQNI..........---TDYHRIWDNWAKEGAA..TEDRTQAVR......
A9MJD9_SALAR/107-172 ...........................................IIFNSDSYTVECGGETVTYTRETAGEqassasgpgsKDAVNYDVIWSEWVKSAPTeeAPNREKAVQ......
A0A2X4TUK9_SALER/107-172 ...........................................IIFNSDSYTVECGGEAVTYTRETAGEqassasghgsKDAVNYDVIWSEWVKSAPTeeAPNREKAVQ......
A0A2X4TEF0_SALER/1-49 ........................................mlp------------MNNSGRIPIVTPEIl........pATGKDYPAIWRAWAREAPLggHELREMAVE......
A0A068Z363_9GAMM/18-65 ................................sagdatssgsv---------------------SQTATv........pLRPDEYYALWSEWEENAMPgmGEKRDIAVA......
A0A3S4E939_SALBN/9-50 ..............................gqiqpaapeslpv--------------------------..........-DGVSYYTLWQTWASEAVAgaGEQREIAVE......
A0A068Z5Y5_9GAMM/15-65 ..............................ylrstgdapssss--------------------VSQTATv........pLRPDEYYALWAEWEENALPgmGEKRDIAVA......
A0A068Z6R4_9GAMM/18-65 .................................sardatssgn---------------VSHTT-----Tv........pLRPDEYYALWSEWEKNAPSggGERRDIAVA......
A0A2U8I533_9GAMM/33-79 ..............................sapnshaqmgktn-----------------QTSMKY---..........LMTKEYHQVWHKWANEAVK.eGEKRQEA--l.....
IPA9_SHIDS/4-48 ...........................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GEERDEAVS......
Q32D09_SHIDS/4-49 ...........................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP..EEQRTEAVR......
Q32F09_SHIDS/7-51 ...........................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GENRNEAVS......
IPA3_SHIFL/7-51 ...........................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GENRNEAVS......
#=GR IPA3_SHIFL/7-51 SS ...........................................XXXXXXXXXXXXXXXXX---------..........X-HHHHHHHHHHHHTT--T..T--HHHHHH......
A0A380PKG6_YERPE/1-60 ...........................................MNLSNITSNVSMPNIEPDREIHSARTst......aaLTPADYYAIWEKWESEAIPgtDEQRRFAVE......
A0A3S4EX46_SALBN/131-174 .............................rlygahamsgatsl--------------------------..........AQPEAYDAIWSEWQANAPP..EEARN----csqave
IPA4_SHIFL/4-54 ...........................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT..TENRIQAVR......
A0A3N4B6U4_YERPE/1-60 ...........................................MNLSNITSNESMPNIEPDREIHSARTst......aaLTPADYYAIWEKWENDPRTvaGEQRGQAVA......
A0A509D1N4_9ENTR/117-192 nytvncqgyhethrltldtaqgeectghaegasgtlrtsllpa-------------------------Tt.......tpQTAAEYYAAWSEWKRAAPE..GESRGRA--eav...
C5B8F6_EDWI9/17-59 .................................pascasaasa-------------------------Ta.......gpQTAEEYEAAWSEWERAAPPeeAADR-----antv..
A0A0H2V170_SHIFL/4-49 ...........................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP..EEQRTEAVR......
Q327F8_SHIDS/4-54 ...........................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT..TENRIQAVR......
A0A0H2USG1_SHIFL/7-63 ...........................................IQAIGSGIMHQINNVYSLTPLSLPMEl.......tpSCNEFYLKTWSEWEKNGTP..GEQRNIAFN......
A0A3N4B5W9_YERPE/1-60 ...........................................MYLSNITSNVSMPNIGPDREIHADRPaa......taLTPADYHAIWEKWENDPRTvaGEQRGQAVA......
E9CQ54_9GAMM/4-65 ...................vnnnpdlpvqtylhsatdtpssgs--------------------VSQTATv........pLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
IPA7_SHIFL/4-49 ...........................................VNNTHSSVSCSPSINSNS--------..........TSNEHYLRILTEWEKNSSP..GEERGIAFN......
A0A3S4GD78_SALBN/107-170 ...........................................ITFNTDSYTVECEGETVTYTLEIESEqtkr..tslsREAVDYELIWSDWVNHAPTdeAPYRESAV-k.....
A0A068Z9P8_9GAMM/17-65 ...............................rsardatssdnv----------S----------HTTTV.........pLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
Q32F07_SHIDS/4-51 ...........................................TNNNHRLISNSFSTYSIDTS------..........CAYENYLTHWTEWKNNRIQ..EEQRDIAFQ......
YOPM_YERPE/8-63 ...........................................VSNTFLQEPLRHSSNLTEMPVEAENV..........KSKTEYYNAWSEWERNAPPgnGEQREMAVS......
#=GR YOPM_YERPE/8-63 SS ...........................................XXXXXXXXXXXXXXXXXXXXXXXXXX..........--HHHHHHHHHHHHHTS-TTS---HHHHHH......
E0WV28_9ENTR/18-65 ............................kyrvqgiaemensqr-------------------------Lps......ssSDKEALYAEWEQWKRNEPP..GEKRAEAVS......
Q32I41_SHIDS/4-54 ..........................................a-HNPSFFRSFCGLGCISHLSVEEQNI..........---TDYHRIWDNWAKEGAA..TEDRTQAVR......
#=GC SS_cons ...........................................XXXXXXXXXXXXXXXXXXXXXXXXXX..........--HHHHHHHHHHHHHTT-TTSTSTHHHHHH......
#=GC seq_cons .....................................................p..t..s...................tsss-YhslWs-Wc+pAss..uEpRs.AVp......
//
