GenomeNet

Database: Pfam
Entry: TTSSLRR
LinkDB: TTSSLRR
Original site: TTSSLRR 
#=GF ID   TTSSLRR
#=GF AC   PF12468.11
#=GF DE   Type III secretion system leucine rich repeat protein  
#=GF AU   Gavin OL;
#=GF SE   Prosite
#=GF GA   21.90 21.90;
#=GF TC   22.50 21.90;
#=GF NC   21.50 21.50;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Repeat
#=GF CL   CL0022
#=GF RN   [1]
#=GF RM   10564523
#=GF RT   Salmonella typhimurium leucine-rich repeat proteins are targeted
#=GF RT   to the SPI1 and SPI2 type III secretion systems.
#=GF RA   Miao EA, Scherer CA, Tsolis RM, Kingsley RA, Adams LG, Baumler
#=GF RA   AJ, Miller SI;
#=GF RL   Mol Microbiol. 1999;34:850-864.
#=GF DR   INTERPRO; IPR032674;
#=GF DR   SO; 0001068; polypeptide_repeat;
#=GF CC   This domain family is found in bacteria, and is approximately 50
#=GF CC   amino acids in length. There are two completely conserved
#=GF CC   residues (Y and W) that may be functionally important. This
#=GF CC   family consists of leucine-rich repeat proteins involved in type
#=GF CC   III secretion.
#=GF SQ   43
#=GS A0A1X1EL27_PANCY/3-64     AC A0A1X1EL27.1
#=GS A0A4Z0KQL1_SALET/107-170  AC A0A4Z0KQL1.1
#=GS A0A068Z9E6_9GAMM/15-65    AC A0A068Z9E6.1
#=GS Q83R64_SHIFL/4-51         AC Q83R64.1
#=GS Q83R64_SHIFL/4-51         DR PDB; 5KH1 A; 22-51;
#=GS A0A516SFS2_9BURK/91-132   AC A0A516SFS2.1
#=GS IPA9_SHIFL/4-48           AC Q8VSC3.2
#=GS IPA9_SHIFL/4-48           DR PDB; 5B0N B; 22-48;
#=GS IPA9_SHIFL/4-48           DR PDB; 5B0T A; 22-48;
#=GS IPA9_SHIFL/4-48           DR PDB; 6K2D B; 22-48;
#=GS IPA9_SHIFL/4-48           DR PDB; 5B0N A; 22-48;
#=GS Q327F7_SHIDS/4-49         AC Q327F7.1
#=GS A0A0H2USC0_SHIFL/7-63     AC A0A0H2USC0.1
#=GS W0I1A6_9GAMM/26-70        AC W0I1A6.1
#=GS A0A068Z9B5_9GAMM/5-65     AC A0A068Z9B5.1
#=GS SLRP_SALTY/107-170        AC Q8ZQQ2.1
#=GS Q327F0_SHIDS/14-70        AC Q327F0.1
#=GS A0A0H2UY03_SHIFL/4-54     AC A0A0H2UY03.1
#=GS A9MJD9_SALAR/107-172      AC A9MJD9.1
#=GS A0A2X4TUK9_SALER/107-172  AC A0A2X4TUK9.1
#=GS A0A2X4TEF0_SALER/1-49     AC A0A2X4TEF0.1
#=GS A0A068Z363_9GAMM/18-65    AC A0A068Z363.1
#=GS A0A3S4E939_SALBN/9-50     AC A0A3S4E939.1
#=GS A0A068Z5Y5_9GAMM/15-65    AC A0A068Z5Y5.1
#=GS A0A068Z6R4_9GAMM/18-65    AC A0A068Z6R4.1
#=GS A0A2U8I533_9GAMM/33-79    AC A0A2U8I533.1
#=GS IPA9_SHIDS/4-48           AC Q326Z6.2
#=GS Q32D09_SHIDS/4-49         AC Q32D09.1
#=GS Q32F09_SHIDS/7-51         AC Q32F09.1
#=GS IPA3_SHIFL/7-51           AC Q83RJ4.1
#=GS IPA3_SHIFL/7-51           DR PDB; 3CVR A; 25-51;
#=GS A0A380PKG6_YERPE/1-60     AC A0A380PKG6.1
#=GS A0A3S4EX46_SALBN/131-174  AC A0A3S4EX46.1
#=GS IPA4_SHIFL/4-54           AC P18009.3
#=GS A0A3N4B6U4_YERPE/1-60     AC A0A3N4B6U4.1
#=GS A0A509D1N4_9ENTR/117-192  AC A0A509D1N4.1
#=GS C5B8F6_EDWI9/17-59        AC C5B8F6.2
#=GS A0A0H2V170_SHIFL/4-49     AC A0A0H2V170.1
#=GS Q327F8_SHIDS/4-54         AC Q327F8.1
#=GS A0A0H2USG1_SHIFL/7-63     AC A0A0H2USG1.1
#=GS A0A3N4B5W9_YERPE/1-60     AC A0A3N4B5W9.1
#=GS E9CQ54_9GAMM/4-65         AC E9CQ54.1
#=GS IPA7_SHIFL/4-49           AC P18014.2
#=GS A0A3S4GD78_SALBN/107-170  AC A0A3S4GD78.1
#=GS A0A068Z9P8_9GAMM/17-65    AC A0A068Z9P8.1
#=GS Q32F07_SHIDS/4-51         AC Q32F07.1
#=GS YOPM_YERPE/8-63           AC P17778.2
#=GS YOPM_YERPE/8-63           DR PDB; 1JL5 A; 1034-1063;
#=GS YOPM_YERPE/8-63           DR PDB; 1G9U A; 34-63;
#=GS E0WV28_9ENTR/18-65        AC E0WV28.1
#=GS Q32I41_SHIDS/4-54         AC Q32I41.1
A0A1X1EL27_PANCY/3-64                .........................................tv---NNHLSSPSFLRANSDSAQQSGNIdgt...paqpQTKEEYLAHWRQWAQEAPVgaGEQRDRAVN......
A0A4Z0KQL1_SALET/107-170             ...........................................IIFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKVAVHYELIWSEWVKEAPAeeAANREEAVQ......
A0A068Z9E6_9GAMM/15-65               ..............................ylrstgdapssss--------------------VSQTATv........pLRPDEYYALWSEWEENAMPgmGEKRDIAVA......
Q83R64_SHIFL/4-51                    ...........................................TNNNHRLISNSFSTYSIDTS------..........RAYENYLTHWTEWKNNRIQ..EEQRDIAFQ......
#=GR Q83R64_SHIFL/4-51         SS    ...........................................XXXXXXXXXXXXXXXXXX--------..........--SHHHHHHHHHHHHTT--..SSTHHHHHH......
A0A516SFS2_9BURK/91-132              ........................................rhl------------------LEVSQPRTq........pTNNAEYLAEWRDWARQPTP.tHEDRRFA--lh....
IPA9_SHIFL/4-48                      ...........................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GEERDEAVS......
#=GR IPA9_SHIFL/4-48           SS    ...........................................XXXXXXXXXXXXXXXXX---------..........X-HHHHHHHHHHHHCT--T..T--HHHHHH......
Q327F7_SHIDS/4-49                    ...........................................VNNTHSSVSCSPSINSNL--------..........TSNEHYLRILTEWEKNSSP..GEERGIAFN......
A0A0H2USC0_SHIFL/7-63                ...........................................IQVIGSGIMHQINNIHSLTLFSLPVSl.......spSCNEYYLKVWSEWERNGTP..GEQRNIAFN......
W0I1A6_9GAMM/26-70                   .....................................vsrppr------------------LTVAEEAS.........gRRQEDYHLIWETWMNNAPPgsLEHRAIA--ce....
A0A068Z9B5_9GAMM/5-65                ....................nnspdfplqtyhhsatdtpssgn-------------------------Vsqt...atvpLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
SLRP_SALTY/107-170                   ...........................................IVFNTEGYTVEGGGKSVTYTRVTESEqass..asgsKDAVNYELIWSEWVKEAPAkeAANREEAVQ......
Q327F0_SHIDS/14-70                   ...........................................IQAIGSGIMHQINNIYSLTPFSSPMEl.......tpSCNEFYLKAWSEWEKNGTP..GEQRNIAFN......
A0A0H2UY03_SHIFL/4-54                ..........................................a-HNPSFFRSFCGLGCISRLSVEEQNI..........---TDYHRIWDNWAKEGAA..TEDRTQAVR......
A9MJD9_SALAR/107-172                 ...........................................IIFNSDSYTVECGGETVTYTRETAGEqassasgpgsKDAVNYDVIWSEWVKSAPTeeAPNREKAVQ......
A0A2X4TUK9_SALER/107-172             ...........................................IIFNSDSYTVECGGEAVTYTRETAGEqassasghgsKDAVNYDVIWSEWVKSAPTeeAPNREKAVQ......
A0A2X4TEF0_SALER/1-49                ........................................mlp------------MNNSGRIPIVTPEIl........pATGKDYPAIWRAWAREAPLggHELREMAVE......
A0A068Z363_9GAMM/18-65               ................................sagdatssgsv---------------------SQTATv........pLRPDEYYALWSEWEENAMPgmGEKRDIAVA......
A0A3S4E939_SALBN/9-50                ..............................gqiqpaapeslpv--------------------------..........-DGVSYYTLWQTWASEAVAgaGEQREIAVE......
A0A068Z5Y5_9GAMM/15-65               ..............................ylrstgdapssss--------------------VSQTATv........pLRPDEYYALWAEWEENALPgmGEKRDIAVA......
A0A068Z6R4_9GAMM/18-65               .................................sardatssgn---------------VSHTT-----Tv........pLRPDEYYALWSEWEKNAPSggGERRDIAVA......
A0A2U8I533_9GAMM/33-79               ..............................sapnshaqmgktn-----------------QTSMKY---..........LMTKEYHQVWHKWANEAVK.eGEKRQEA--l.....
IPA9_SHIDS/4-48                      ...........................................INNNFSLPQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GEERDEAVS......
Q32D09_SHIDS/4-49                    ...........................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP..EEQRTEAVR......
Q32F09_SHIDS/7-51                    ...........................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GENRNEAVS......
IPA3_SHIFL/7-51                      ...........................................INNNFSLSQNSFYNTIS---------..........GTYADYFSAWDKWEKQALP..GENRNEAVS......
#=GR IPA3_SHIFL/7-51           SS    ...........................................XXXXXXXXXXXXXXXXX---------..........X-HHHHHHHHHHHHTT--T..T--HHHHHH......
A0A380PKG6_YERPE/1-60                ...........................................MNLSNITSNVSMPNIEPDREIHSARTst......aaLTPADYYAIWEKWESEAIPgtDEQRRFAVE......
A0A3S4EX46_SALBN/131-174             .............................rlygahamsgatsl--------------------------..........AQPEAYDAIWSEWQANAPP..EEARN----csqave
IPA4_SHIFL/4-54                      ...........................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT..TENRIQAVR......
A0A3N4B6U4_YERPE/1-60                ...........................................MNLSNITSNESMPNIEPDREIHSARTst......aaLTPADYYAIWEKWENDPRTvaGEQRGQAVA......
A0A509D1N4_9ENTR/117-192             nytvncqgyhethrltldtaqgeectghaegasgtlrtsllpa-------------------------Tt.......tpQTAAEYYAAWSEWKRAAPE..GESRGRA--eav...
C5B8F6_EDWI9/17-59                   .................................pascasaasa-------------------------Ta.......gpQTAEEYEAAWSEWERAAPPeeAADR-----antv..
A0A0H2V170_SHIFL/4-49                ...........................................INMLRNISSCLFPHISTI--------..........TSPNHYLSEWDDWEKQGLP..EEQRTEAVR......
Q327F8_SHIDS/4-54                    ...........................................INNHSFFRSLCGLSCISRLSVEEQCT..........---RDYHRIWDDWAREGTT..TENRIQAVR......
A0A0H2USG1_SHIFL/7-63                ...........................................IQAIGSGIMHQINNVYSLTPLSLPMEl.......tpSCNEFYLKTWSEWEKNGTP..GEQRNIAFN......
A0A3N4B5W9_YERPE/1-60                ...........................................MYLSNITSNVSMPNIGPDREIHADRPaa......taLTPADYHAIWEKWENDPRTvaGEQRGQAVA......
E9CQ54_9GAMM/4-65                    ...................vnnnpdlpvqtylhsatdtpssgs--------------------VSQTATv........pLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
IPA7_SHIFL/4-49                      ...........................................VNNTHSSVSCSPSINSNS--------..........TSNEHYLRILTEWEKNSSP..GEERGIAFN......
A0A3S4GD78_SALBN/107-170             ...........................................ITFNTDSYTVECEGETVTYTLEIESEqtkr..tslsREAVDYELIWSDWVNHAPTdeAPYRESAV-k.....
A0A068Z9P8_9GAMM/17-65               ...............................rsardatssdnv----------S----------HTTTV.........pLRPDEYYALWSEWEENAPPgmGEKRDIAVA......
Q32F07_SHIDS/4-51                    ...........................................TNNNHRLISNSFSTYSIDTS------..........CAYENYLTHWTEWKNNRIQ..EEQRDIAFQ......
YOPM_YERPE/8-63                      ...........................................VSNTFLQEPLRHSSNLTEMPVEAENV..........KSKTEYYNAWSEWERNAPPgnGEQREMAVS......
#=GR YOPM_YERPE/8-63           SS    ...........................................XXXXXXXXXXXXXXXXXXXXXXXXXX..........--HHHHHHHHHHHHHTS-TTS---HHHHHH......
E0WV28_9ENTR/18-65                   ............................kyrvqgiaemensqr-------------------------Lps......ssSDKEALYAEWEQWKRNEPP..GEKRAEAVS......
Q32I41_SHIDS/4-54                    ..........................................a-HNPSFFRSFCGLGCISHLSVEEQNI..........---TDYHRIWDNWAKEGAA..TEDRTQAVR......
#=GC SS_cons                         ...........................................XXXXXXXXXXXXXXXXXXXXXXXXXX..........--HHHHHHHHHHHHHTT-TTSTSTHHHHHH......
#=GC seq_cons                        .....................................................p..t..s...................tsss-YhslWs-Wc+pAss..uEpRs.AVp......
//
DBGET integrated database retrieval system