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Database: Pfam
Entry: TcpF
LinkDB: TcpF
Original site: TcpF 
#=GF ID   TcpF
#=GF AC   PF06340.14
#=GF DE   Vibrio cholerae toxin co-regulated pilus biosynthesis protein F
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_13058 (release 9.0)
#=GF GA   25.00 25.00;
#=GF TC   760.40 760.30;
#=GF NC   24.60 20.50;
#=GF BM   hmmbuild --amino HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11466276
#=GF RT   Characterization of VPI pathogenicity island and CTXphi prophage
#=GF RT   in environmental strains of Vibrio cholerae. 
#=GF RA   Mukhopadhyay AK, Chakraborty S, Takeda Y, Nair GB, Berg DE; 
#=GF RL   J Bacteriol 2001;183:4737-4746.
#=GF DR   INTERPRO; IPR009405;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Vibrio cholerae toxin
#=GF CC   co-regulated pilus biosynthesis protein F (TcpF) sequences. TcpF
#=GF CC   is known to be a secreted virulence protein but its exact
#=GF CC   function is unknown [1].
#=GF SQ   1
#=GS TCPF_VIBCH/21-337  AC P0C6Q5.1
#=GS TCPF_VIBCH/21-337  DR PDB; 3OC5 A; 25-317;
#=GS TCPF_VIBCH/21-337  DR PDB; 3OC8 A; 186-317;
TCPF_VIBCH/21-337             FNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENF
#=GR TCPF_VIBCH/21-337  SS    XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTHHHHHHTTXXGGGGGGGGTBXXXTTSSGGGGGSXXXXXXXXXXSXHHHHHHHHHTTXHHHHHHHTGGGTXXTTXSXEEXXXHHHHHHHHHHHHTTXSXHHHHHHTSSEEEEEEETTEEEEEEESSXXTTSXEEXXXXEETTTSXXXXSXSSEEEX-B--------TTS-B--TTS--EEEEEEEHHHHHCTT---TTSEEEEEEEE---TTT---SS-SEEEEE--B--S---TTEEEEEEE--GCCTTSCCHHHHTT-TT-EEEEEEEETTS-SS-EE---B-GGG
#=GC SS_cons                  XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTHHHHHHTTXXGGGGGGGGTBXXXTTSSGGGGGSXXXXXXXXXXSXHHHHHHHHHTTXHHHHHHHTGGGTXXTTXSXEEXXXHHHHHHHHHHHHTTXSXHHHHHHTSSEEEEEEETTEEEEEEESSXXTTSXEEXXXXEETTTSXXXXSXSSEEEX-B--------TTS-B--TTS--EEEEEEEHHHHHCTT---TTSEEEEEEEE---TTT---SS-SEEEEE--B--S---TTEEEEEEE--GCCTTSCCHHHHTT-TT-EEEEEEEETTS-SS-EE---B-GGG
#=GC seq_cons                 FNDNYSSTSTVYATSNEATDSRGSEHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPSTESDGAKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYITGRFLTKENGRYDIVNVGGVPDNTPVKLPAIVSKRGLMGTTSVVNAIPNEIYPHIKVYEGTLSRLKPGGAMIAVLEYDVNELSKHGYTNLWDVQFKVLVGVPHAETGVIYDPVYEETVKPYQPSNNLTGKKLYNVSTNDMHNGYKWSNTMFSNSNYKTQILLTKGDGSGVKLYSKAYSENF
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