GenomeNet

Database: Pfam
Entry: UPF0242
LinkDB: UPF0242
Original site: UPF0242 
#=GF ID   UPF0242
#=GF AC   PF06785.13
#=GF DE   Uncharacterised protein family (UPF0242) N-terminus
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF AU   Bateman A;0000-0002-6982-4660
#=GF SE   SWISS-PROT
#=GF GA   33.50 33.50;
#=GF TC   33.70 33.60;
#=GF NC   33.40 33.30;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 57096847 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF DR   INTERPRO; IPR009623;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This region includes an N-terminal transmembrane region and a
#=GF CC   C-terminal coiled-coil.
#=GF SQ   13
#=GS A0A090E0C4_9BACT/9-200   AC A0A090E0C4.1
#=GS A0A1T5GBH3_9FLAO/17-192  AC A0A1T5GBH3.1
#=GS A0A0C1JYI3_9BACT/1-179   AC A0A0C1JYI3.1
#=GS A0A1G8B450_9BACI/1-166   AC A0A1G8B450.1
#=GS A0A212KW93_9CHLA/12-229  AC A0A212KW93.1
#=GS D6YT85_WADCW/8-197       AC D6YT85.1
#=GS A0A0U5JAE2_9BACT/19-240  AC A0A0U5JAE2.1
#=GS A0A0H5DSR8_9BACT/11-200  AC A0A0H5DSR8.1
#=GS S7IPT4_CHLPS/6-224       AC S7IPT4.1
#=GS Q6MEU1_PARUW/17-234      AC Q6MEU1.1
#=GS Y616_CHLTR/31-249        AC O84621.1
#=GS F8L247_PARAV/8-200       AC F8L247.1
#=GS A0A658S768_CHLAO/1-30    AC A0A658S768.1
A0A090E0C4_9BACT/9-200              ........RQSVTISALLVYSAPLI.fVLGFSKNQTFS---S.WT.............IFSIAL....LILSAASLIHLSLLFNFYKNEGEGFeg..................ssEKENPDQKE..AFLSEER................----RVELE.........ELENLRAKEEELREE.....................ISYRNEELLRLTREKEfeiSLREQLED---.......DFDRFRKDSEDRLAEEKILLQEYAENISSLRASLEERQEENERLQSKIRDMAYEIKTLVDLA.....
A0A1T5GBH3_9FLAO/17-192             iangimww-----------------..---IGSIPSLVVHTI.FF.............ILCFAL....PIIGLVDWDHMLLVLTTLLSLEAIY......................LAIFIQMSV..NKSSEHIe.............vlREDVEEIQE.........DIDEIQEDIEEISED.....................IEEISEDIEDISEDIE...EINEDIDEIQE.......DIEEINEDEEDEDHGERARTVMLKSKVSSNRYEIKQLRDKISELESLI--------------drike
A0A0C1JYI3_9BACT/1-179              ........-----------------..---------MPVQKG.WN.............LLAFGI....FCSSIGLLGIFWMMCRLSHKAEHGTrdnq..............psvlEASEFSPKQ..SNIVELD................----MTQAK.........ALEDLQEQYNELHAQvla..............aqkdLEAKTKELLEREQNNQ...HLQEKLSASAA.......EYEMSKQAYESALDQQKLLLDESQKTITEQRECIDKKLQQIAQLEIKVSDLTYEIKTLIQLA.....
A0A1G8B450_9BACI/1-166              ......ma-----------------..---------------.--.............-----L....FYLGCAAV-LAALLYLFYHVCRKWI......................TKETNMSKKvfAFLSAGGlvimiagfefidstttATPLHNTDQ.........TTEPLTEELHTLKAE.....................NDSLKKDLKTFRTEKQ...TLEEALQESKK.......ELQELSKKAEEYMEETTRLIDEM----EVLHERIKELEDENASLKAEIDDTEY---------nensy
A0A212KW93_9CHLA/12-229             .......k-QAVYLTIFTVYLLPVL..IYSKHSIGLMPSTKS.WG.............ILSVGL....VLSLFGSALLILLVHNWEVTLKSKLaaivtrrvdeslhhqslqmpatGMVYEEE--..------Kitplh......pdpngDHENSRLRQ.........MLAEGQKQSDQLSEE.....................LRSTMHELRQFAQEKD...TLAQQLEDLRG.......EYDRYTANSEDKLQQRDGSVSTFQRTLVEQRTELESKQHLIAKLENKVRDLSYEVKTLLQL-g....
D6YT85_WADCW/8-197                  ........RLQLSGLIIALYFASIL..IISIYPDASLL----.--.............KFVFGL....FIASVGSILAFLLLRQW--------......................EKSKLAEQL..PLPSSPEpmqna......psfssPENIGELEQ.........ALKDAQSKNHDLIQK.....................QNQLEETLHKHEQEKA...QFELKLQDIQH.......QIEAQSLEADEEIRRKTTLLSEYQETINQQREVIKKKQEQISELESKVRDLNYEVKTLLQLA.....
A0A0U5JAE2_9BACT/19-240             ........RQYLSIAIIFFYLLPLL..FFASYSIGLMSHHKS.WS.............MLSFGL....LLIACGSLCLILLIYYWELALKEKLqteq.............sklfhQISFNPEKE..NKVTSLDtshtf......pqlidSEPHSIKDDikdlslletNLKESQSEQMRLEEE.....................VQSKSLAIEHLTEENQ...LLSVKAQQTSQ.......DFSDYKLFSEEQLKQKQLQINLLQQMIEDQRGEMEKRQDQIYQLDTKVHDLSYEIKTLLYLH.....
A0A0H5DSR8_9BACT/11-200             .....lll-------TVLFYTLPLS.lIIGAAGYFGIS-LYS.SK.............FLSMGL....FVISMGSI-------AIYMELRQKV......................SSELPQEEL..PPVAEEPlvl.........dflpAEGKESEEA.........ANTAFLQLEKELREE.....................IAFRNEEIQRLNQERE...RERVEKELKEE.......ELDSAQRLFEEKLEEEKLRNIGLQETVSDLKSRLEFKQEEIDKLGGKIRDLTYEIKTLLQI-a....
S7IPT4_CHLPS/6-224                  ....kffh----PIARYHNYLFPIVafLLPLVCLPFLSDSQKkYS.............YFVFS-....IISLVGWFFSIGLR---EKQLKTA-......................AGQLLQTKI..RKIIEKD................-EGLRKICE.........SVEERQYESQQLRSQnqkllnqllhvrgvfmktkadMQKLEGLVAHLREENQ...CLQLQLDALSQecrekeeESRELNRELAEALAYQQVLNEEYQATFTEQHNMLDVRQVYIGKLESKVQDLMCEIRNLLQLE.....
Q6MEU1_PARUW/17-234                 ........RQFFSAAVIFFYLLPLL..FFVTYSIGLMPHQKS.WS.............ILTLGL....LLVAIGSICLILLAYYWEIGLKTKWqges.............ailssQSSFTSEKE..NKVTALDpaftl......vpleeAPSFTTKEEvt....llnSLENLNDEQRKREEE.....................LALKQSEIQKLVEENQ...SLISQTQQTQQ.......DFADYKLFSEEQLKQKQLQINFLQQTIEDQRSEMEKRQDQIFHLDTKVHDLSYEIKTLLYLH.....
Y616_CHLTR/31-249                   ........KIHYCISRYFHYLPPVLaiLLPIGSWPFLSEQQW.WYgsflfpvvsslgwLFAIGRrerqLRAAAGQL-----------------......................----LEAKI..RKLTEQD................-EGLKNIRE.........TIEKRQKETDRLKLHndklveqlgqarevfiqakgrYDHMEELSRRLKEENQ...QLQIQLEAAVRernekilENQELLQELKETLAYQQELHDEYQATFVEQHSMLDKRQAYIGNLEAKVQDLMCELRNLLQLE.....
F8L247_PARAV/8-200                  ........RHQLIGLAVALYLIPLF..VLTFMSLQHLPLSKS.WT.............FLSVGL....FLSLAGSLFLLFVLKGWEDALKLYF......................ENIYIESQK..ALIPETP................AEDFAILKQ.........KVEELTEQEELLARE.....................LSQKDTELAEYQNREE...EIK-RLVQISE.......DFAEFRLEMEQQIEEREQLIHTLRQETHEQKIVLQSKDDRIEDLESQVNDRNYELQTLLKF-s....
A0A658S768_CHLAO/1-30               ........-----------------..---------------.--.............------....-------------------------......................---------..-------................---------.........---------------.....................----------------...-----------.......--------------------------------MLDVRQVYIGKLESKVQDLMCEIRNLLQLE.....
#=GC seq_cons                       .............h.hhhhYhhPlh..hhshhsh.hhs.ppt.at.............hhshGL....hlhuhGulhhhhLhh.h.hthcphh......................ptph.ppc...shlsp.c.................cshpphcp.........sl-chppcpccLcp-.....................lpphpc-lpchppEpp...pLp.pLpphpp.......-hpchptp.E-pLcpcphhlsphQpsls-Q+ppl-p+Q-pIucLEoKVpDLsYEl+TLLpLt.....
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