GenomeNet

Database: Pfam
Entry: Zea_mays_MuDR
LinkDB: Zea_mays_MuDR
Original site: Zea_mays_MuDR 
#=GF ID   Zea_mays_MuDR
#=GF AC   PF05928.14
#=GF DE   Zea mays MURB-like protein (MuDR)
#=GF AU   Moxon SJ;0000-0003-4644-1816
#=GF SE   Pfam-B_3145 (release 9.0)
#=GF GA   20.80 20.80;
#=GF TC   21.10 20.90;
#=GF NC   19.40 20.60;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   11251096
#=GF RT   Expression and post-transcriptional regulation of maize
#=GF RT   transposable element MuDR and its derivatives. 
#=GF RA   Rudenko GN, Walbot V; 
#=GF RL   Plant Cell 2001;13:553-570.
#=GF DR   INTERPRO; IPR009227;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This family consists of several Zea mays specific MURB-like
#=GF CC   proteins. The transposition of Mu elements underlying Mutator
#=GF CC   activity in maize requires a transcriptionally active MuDR
#=GF CC   element. Despite variation in MuDR copy number and RNA levels in
#=GF CC   Mutator lines, transposition events are consistently late in
#=GF CC   plant development, and Mu excision frequencies are similar [1].
#=GF SQ   3
#=GS A0A437BHP9_CHISP/37-184  AC A0A437BHP9.1
#=GS A0A1D6IZB4_MAIZE/3-77    AC A0A1D6IZB4.1
#=GS A0A1X7V014_AMPQE/37-151  AC A0A1X7V014.1
A0A437BHP9_CHISP/37-184             kcklfmvvessklpnpksgivevqkpngnwykcidsgg-----------------------------------------------------------------KYHCKFCELVYNSIQTLRVHTKMKHSSEALAITAAQ---SNI.KKSKKNLCHICKEMFKSLNHLEEHLKNSHQMY--KENKCCHLCHSV------------------------------------------------------fdnekvlsdhmlsahnvqlrkmhicnt
A0A1D6IZB4_MAIZE/3-77               ...............................hgsstlg--------VVEALDATRATAVTAEEARTAAREMEKKAASTAKLAAITMDKVGFVVV---------------------------------------------------.----------------------------------------------------------------------------------------------------avasavteeanaldsvahhy.......
A0A1X7V014_AMPQE/37-151             ...............................vtlknmt----------------------------------------KRFNDIIAEQDEQLRISAKILTEDMKYFTQIAKKKVKTIQEKRRQKQQLPSTTNLIQCVNQGAGSEIlTHYKEKWNHIHSDTNASSALCDEMYQ--------------------------------------------------------------------------slqklygsmsnshh.............
#=GC seq_cons                       ...............................+slcohG........................................t+hssIhh-pst.lhl.........KYasphschhhpoIQphRhppp.h.SopsLh.sssQ...SpI.p+.KcphsHIpp-h.tS.shh-Ehhp..........................................................................ulsctVsS-uNupcpssphh.......
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