GenomeNet

Database: Pfam
Entry: zf-RRPl_C4
LinkDB: zf-RRPl_C4
Original site: zf-RRPl_C4 
#=GF ID   zf-RRPl_C4
#=GF AC   PF17026.8
#=GF DE   Putative ribonucleoprotein zinc-finger pf C4 type
#=GF AU   Coggill P;0000-0001-5731-1588
#=GF SE   c_2033 - Hirt RP, Nakjang S
#=GF GA   28.90 28.90;
#=GF TC   29.40 38.50;
#=GF NC   28.80 28.80;
#=GF BM   hmmbuild HMM.ann SEED.ann
#=GF SM   hmmsearch -Z 61295632 -E 1000 --cpu 4 HMM pfamseq
#=GF TP   Family
#=GF RN   [1]
#=GF RM   24259309
#=GF RT   Reduction and expansion in microsporidian genome evolution: new
#=GF RT   insights from comparative genomics.
#=GF RA   Nakjang S, Williams TA, Heinz E, Watson AK, Foster PG, Sendra
#=GF RA   KM, Heaps SE, Hirt RP, Martin Embley T;
#=GF RL   Genome Biol Evol. 2013;5:2285-2303.
#=GF RN   [2]
#=GF RM   23829473
#=GF RT   Genome sequencing and comparative genomics of honey bee
#=GF RT   microsporidia, Nosema apis reveal novel insights into
#=GF RT   host-parasite interactions.
#=GF RA   Chen Yp, Pettis JS, Zhao Y, Liu X, Tallon LJ, Sadzewicz LD, Li
#=GF RA   R, Zheng H, Huang S, Zhang X, Hamilton MC, Pernal SF,
#=GF RA   Melathopoulos AP, Yan X, Evans JD;
#=GF RL   BMC Genomics. 2013;14:451.
#=GF DR   INTERPRO; IPR031502;
#=GF DR   SO; 0100021; polypeptide_conserved_region;
#=GF CC   This is a family of largely microsporidia-specific proteins [2].
#=GF CC   One member is annotated as being a ribonucleoprotein [2]. The
#=GF CC   family carries two pairs of CxxC residues suggesting that there
#=GF CC   is DNA-binding.
#=GF SQ   24
#=GS A9CS86_ENTBH/4-109       AC A9CS86.1
#=GS T0L8F9_9MICR/2-104       AC T0L8F9.1
#=GS H8ZD77_NEMS1/1-125       AC H8ZD77.1
#=GS A0A0B2UIY6_9MICR/1-108   AC A0A0B2UIY6.1
#=GS R0KNU3_NOSB1/1-108       AC R0KNU3.1
#=GS L7JTU2_TRAHO/2-107       AC L7JTU2.1
#=GS A0A059EJS2_9MICR/2-99    AC A0A059EJS2.1
#=GS A0A4Q9L787_9MICR/3-110   AC A0A4Q9L787.1
#=GS R0MJP0_NOSB1/1-108       AC R0MJP0.1
#=GS L2GT41_VAVCU/2-107       AC L2GT41.1
#=GS L2GPX9_VITCO/1-106       AC L2GPX9.1
#=GS A0A1W0E451_9MICR/5-110   AC A0A1W0E451.1
#=GS A0A059F0Y4_9MICR/2-99    AC A0A059F0Y4.1
#=GS A0A177EIQ1_9MICR/1-122   AC A0A177EIQ1.1
#=GS S7W639_SPRLO/4-102       AC S7W639.1
#=GS A0A4Q9LTI6_9MICR/3-110   AC A0A4Q9LTI6.1
#=GS A0A059EFB0_9MICR/4-70    AC A0A059EFB0.1
#=GS A0A1X0QD39_9MICR/3-110   AC A0A1X0QD39.1
#=GS Q8SV51_ENCCU/1-108       AC Q8SV51.1
#=GS A0A0F9YVC3_9MICR/14-118  AC A0A0F9YVC3.1
#=GS I3EH17_NEMP3/1-125       AC I3EH17.1
#=GS A0A059EK75_9MICR/2-99    AC A0A059EK75.1
#=GS A0A437ALB9_9MICR/1-97    AC A0A437ALB9.1
#=GS C4V895_NOSCE/14-118      AC C4V895.1
A9CS86_ENTBH/4-109                  ........l-KICRTCLSNEIVILSHSIYCKVCNVYYH.VESENQYVSSIPVK.E.......FNCLSI--TLCIQCKSSINENRI..ISCVNYIDFLHKLH..............LCSNCKKTNENFLLNLYYRNFITYKKI..........
T0L8F9_9MICR/2-104                  ........s-LKCKFCSSK-IDN----NYCKTCRAHFK.FKNNTQIYTSVEID.K.......LNYSSIQDRLCIKCTKYYATNCV..IYAYSFIDYIKKLK..............FCRSCKKENEKFIRNMFYNNFIMYR--fk........
H8ZD77_NEMS1/1-125                  .........MKKCPYCGSKKLDNLTETVYCDACQSYFR.----RTKDELVPIFiEnkevyrkYQKISERRVLCTVCQERNEMEIE.kLRAE--EEQREKLKrpmkkdkndlifsnLCRECVERVNAKLESDRVKYYPEYRSF..........
A0A0B2UIY6_9MICR/1-108              .........MKQCSYCGFRRIVALNSKYYCEECEVYYT.YRNNKQEYSNFPME.E.......TDQIAVKSGLCKKCEPRHESGRC..VCCRTFREYFKKLP..............FCKKCKEKNERCIKNVFFRNFILYKT-h.........
R0KNU3_NOSB1/1-108                  .........MTICSYCRKSKLIKSDEYIYCPTCESYFT.QTNVKQKHAYVKIE.D.......TDQITLYGNLCDYCEKKYNTEKY..ITCQTFNDYLYGLN..............FCTKCRIRNLKFLKNSYNKSFLLYKA-k.........
L7JTU2_TRAHO/2-107                  .......sl--TCTFCTRSNLSTYNDLWYCPTCTVYLK.QKNGRLFYHYIPSKiD.......GTIRSLNDILCTKCKTMNTT---..VKCTNFDCFYRKVQ..............YCDTCKARGYMVLRNNFYKNLPRCHR-i.........
A0A059EJS2_9MICR/2-99               ........t-ASCEFCHRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLK--.-.......----SSNIPLCNKCNKKKNT--K..IHCMDFKDYLKKLP..............FCKLCLEEKKLDFKYNFFKHTLFYRR-v.........
A0A4Q9L787_9MICR/3-110              ........i-KECGFCRSKKLVFLLEKIYCEECEVYFK.FKNNKYEACHLPTT.D......iNNCIPIRRQICDKCIETDLE-KS..IRCRNFNEYFLKVH..............FCNFCKDKLRLYMKTLFYKRVMLYKQ-q.........
R0MJP0_NOSB1/1-108                  .........MTICSYCRKSKLIKSDEYIYCPTCESYFT.QTNVKQKHAYVKIE.D.......TDQITLYGNLCDYCEKKYNTEKY..ITCQTFNDYLYGLN..............FCTKCRIRNLKFLKNSYNKSFLLYKA-k.........
L2GT41_VAVCU/2-107                  ........l-FTCKFCIRSNLSAYNDLLYCPKCKIYLK.EKDGRLFYHYVPSKiD.......GTFRSLSDLLCAKCRTMNTT---..ITCTNFDDFYKKVQ..............YCDMCKVRGYMVLRNNFYKNLPLCHM-v.........
L2GPX9_VITCO/1-106                  .........MKQCQFCNSHKTKVLNDTLFCENCEIYFT.LKNGIQLIKSLPIA.E.......TKQRTL--NLCVSCSRRAMKNSS..IKCRTFREYLKRLP..............YCSSCKSLNVVFLKNLFFKNFLLYKKI..........
A0A1W0E451_9MICR/5-110              ........p-KFCQVCLSQQIILLSGSVYCEKCEVYYQ.LENGNQFVAAIPVS.E.......IDQMGP--DLCKKCEGIKKSNRK..IECTSFNDFTKKIK..............LCGKCKSINHSFLKNLYFRNFVLCRK-t.........
A0A059F0Y4_9MICR/2-99               ........t-ASCEFCYRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLKSS.D.......-----I--PLCNKCNKKKNT--K..IHCMDYKDYLKKLP..............FCKSCLEDKKLDFKYNFFKHTLFYRR-v.........
A0A177EIQ1_9MICR/1-122              ........m--ECVYCRNTKLTMLNGTCFCSECLSYFK.VDGKTLFPIFVENK.Evy...tvHRAVVTKTLLCSICLEREEREYQrrRNEEEHKEQILGKKrhks.....teknyLCRECIDRINNKLREDK----------kaviepylay
S7W639_SPRLO/4-102                  ........p-VECKFCCNKNLIFLYNKIFCSKCNIYYH.IENND--WIPTPIH.Q.......----SILSRLCNKCKNKKGK---..IICSDIEDYIKKSL..............FCKDCKQRVIQSIKYNFIRYNDIYKK-n.........
A0A4Q9LTI6_9MICR/3-110              ........i-KECGFCRSKKLVFLLEKIYCEECEVYFK.FKNNNYEACHLPTT.D......iNNCIPIRRQICDKCIETDLE-KS..IRCRNFNEYFLKVH..............FCNFCKDKLRLYMKTLFYKRVMLYKQ-q.........
A0A059EFB0_9MICR/4-70               ktpyilnlk-----------------------------.--------------.-.......----SSNIPLCNKCNKKKNT--K..IHCMDFKDYLKKLP..............FCKLCLEEKKLDFKYNFFKHTLFYRR-v.........
A0A1X0QD39_9MICR/3-110              ........r-KICQICYSPDIILLDDYLYCEKCEIYYK.MDNNKQKVSCLPIN.Q.......SKQIDF--ILCAKCNHNIKNDTEnvIICRTFRDFYQSFP..............ICSLCKEKNSDFISRLFHNNFLNYKK-e.........
Q8SV51_ENCCU/1-108                  .........MSRCEYCKSRNMLPLNGKYYCEECEIYYI.YKDKKQEYSNLPIE.E.......IGQMTVGNHLCRKCKLKYSGKKS..IACTTFREYFKKLP..............MCKRCKKSNERCIKNAFFKNFILYKT-y.........
A0A0F9YVC3_9MICR/14-118             ........t-YKCQYCGTNVIKN-----YCSVCRSHFTiVNNNEQKYLSVEMD.D.......LEFLSISDKLCPLCTRYYKNSKY.iIRSTSFSDYFAKLK..............FCKKCKNDSKKFIRNMFYKNFTLNRR-l.........
I3EH17_NEMP3/1-125                  .........MKKCPYCFSKKLENLNETVYCDACQSYFR.----RTPTELVPIFiEnkevyrkYQKISERRILCTVCQERNENENE.kFRAE--DEQRLKLNkpikndtrtlvnsgLCRECVERVNSKLESDKNKYYSAYKSF..........
A0A059EK75_9MICR/2-99               ........t-TSCEFCHRTNTIKLNNKIYCNHCEIYIS.-SDKTPYILNLK--.-.......----SSNIPLCNKCNKKKNT--K..IYCMDFKDYLKKLP..............FCKLCLEDKKLDFKYNFFKHTLFYRR-v.........
A0A437ALB9_9MICR/1-97               ........m--KCHFCSSKNTIKLKKKIYCNNCEIYIT.E---HNLPMLINIE.K.......-----TYQLLCKKCLTIKNR--K..IHCSGFKEYLKKLP..............FCSVCKNTRKNDFKYDFFKHTSFYRK-e.........
C4V895_NOSCE/14-118                 ........t-YKCQYCGTNVIKN-----YCSVCRSHFTiVNNNEQKYLSVEMD.D.......LEFLSISDKLCPLCTRYYKNSKY.iIRSTSFSDYFAKLK..............FCKKCKNDSKKFIRNMFYKNFTLNRR-l.........
#=GC seq_cons                       ..........tpCpaCtspplhhLspplYCppCclYap..pstp.hht.l.hp.-.......hp.holtt.LCsKCpcppps..p..IpCpsFc-YhcKL...............aCcpCKpcspthl+ssFaKphhhY+p.h.........
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