KEGG   Panicum hallii (Hall's panicgrass): 112875607
Entry
112875607         CDS       T07366                                 
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic-like
  KO
K04077  chaperonin GroEL [EC:5.6.1.7]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112875607
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phai03019]
    112875607
   03110 Chaperones and folding catalysts [BR:phai03110]
    112875607
   03029 Mitochondrial biogenesis [BR:phai03029]
    112875607
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:phai04147]
    112875607
Enzymes [BR:phai01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.1  Enzymes altering polypeptide conformation or assembly
    5.6.1.7  chaperonin ATPase
     112875607
Messenger RNA biogenesis [BR:phai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     112875607
Chaperones and folding catalysts [BR:phai03110]
 Heat shock proteins
  HSP60 / Chaperonin
   112875607
Mitochondrial biogenesis [BR:phai03029]
 Mitochondrial protein import machinery
  Matrix
   Other matrix factors
    112875607
Exosome [BR:phai04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   112875607
  Exosomal proteins of other body fluids (saliva and urine)
   112875607
  Exosomal proteins of breast cancer cells
   112875607
  Exosomal proteins of colorectal cancer cells
   112875607
  Exosomal proteins of bladder cancer cells
   112875607
SSDB
Motif
Pfam: Cpn60_TCP1 YIEGIA_cap
Other DBs
NCBI-GeneID: 112875607
NCBI-ProteinID: XP_025795306
Position
1:308943..313829
AA seq 598 aa
MASTFGTCRLNKPATAAFATNKTLLLSPPVVSLPRQMKMRPQRKCRLTVNAAKELHFNKD
GSAIRKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEVELEDPVENI
GAKLVRQAAAKTNDLAGDGTTTSVVLAQGMITEGVKIVAAGANPVQITRGIEKTAKALVN
ELQKMSKEVEDSELADVAAVSAGNNYEIGNIIAEAMSKVGRQGVVTLEEGKSAENNLYVV
EGMQFDRGYISPYFVTDSEKMTVEYENCKLLLVDKKINNARDLITILEDSIRGGYPILIV
AEDIEQEALATLVVNRLRGALKVAAIKAPGFGERKSQYLDDIATLTGGTVIRDEVGLSLE
KADKEVLGTAAKIVVTKDSTTIVGDGTTQEEVNKRVMQIKSQIEATDQEYEREKLNERIA
KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAII
ETLENDEQRVGAEIVRKSLSYPLKLIAKNAGVNGSVVIEKVLANENFRYGYNAATGNYED
LMAAGIIDPTKVVRCCLEHAASVAKTFITSDAVVVDIKVPEQAPAANPMGGGGSGFGF
NT seq 1797 nt   +upstreamnt  +downstreamnt
atggcgtcaacgttcgggacatgtcgcctcaacaagccagcaactgctgcttttgcgacc
aacaagaccctcctcctttcgcccccggttgtttccctcccacgccaaatgaaaatgagg
ccccagaggaagtgccgtctcacagtaaatgcagcaaaggagctccatttcaacaaggat
ggctcggctatcaggaaacttcagaatggggtcaataagcttgcagatctcgttggggtt
actcttggtccaaaaggacgaaatgtagtccttgagagcaagtatggctcacctaaaatc
gtcaatgatggagtcactgtcgcaaaggaggttgagctggaggaccctgttgaaaacatt
ggagctaaattggtccgccaagctgctgctaaaacaaatgatttggctggtgatgggaca
accacttcggtcgtccttgctcaagggatgattactgagggtgtaaagattgtagctgct
ggtgctaatccagtgcagatcacccggggtattgagaaaacagccaaagcactagtaaat
gaactccaaaagatgtccaaggaggttgaggatagtgagctggctgatgttgctgcagta
agcgctggaaataactacgaaattgggaatattatagctgaggctatgagcaaggttgga
cggcagggagtggtcacccttgaagaaggaaagagtgctgaaaataacctctatgttgtt
gagggaatgcagttcgatcgtggttatatttctccctactttgtgactgacagtgaaaaa
atgacagtggagtatgagaattgcaagctgctccttgtggacaagaaaattaacaatgca
agagatcttatcactattctggaggactctattagaggtgggtatccaattctgatagtc
gcagaggatattgagcaggaagctcttgcaacccttgtggttaataggcttagaggtgca
ttgaaagttgctgctatcaaggcccctggctttggagagcgcaagagtcaatacctggat
gacattgctactctcactggaggcactgtcatcagagatgaagttgggttgtccctagag
aaggcagacaaggaggtcctaggaactgctgccaagattgtagttactaaggattcaaca
acaatagttggagatggtactacacaggaggaagtaaacaaaagggtgatgcaaatcaag
agccagattgaggcaactgatcaagaatatgagagagaaaagctcaacgagaggattgct
aaactgtctggtggtgttgctgttattcaggtgggagcacagacagaaactgagcttaag
gaaaagaaactgagggttgaagatgcccttaatgctacaaaggcagcagttgaggaaggc
attgttgtaggtggtggctgtacccttttaaggcttgcatcaaaagttgatgccattata
gaaacccttgagaatgatgaacagagggtcggggctgaaattgtaaggaagtccttgagc
tatccacttaaattgattgcaaagaatgcgggtgttaatggcagtgtggttatcgagaag
gttcttgccaatgagaacttcaggtatggttacaatgcagctacagggaactatgaggat
ttgatggctgctggtattattgatcccaccaaggttgtgaggtgttgcttggagcatgct
gcctcagtggcaaaaactttcatcacttctgatgctgttgtggttgacatcaaggtgccc
gagcaagcacctgctgcaaacccaatgggtggtggtggctcaggttttggattctag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (8)   

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