KEGG   Panicum hallii (Hall's panicgrass): 112898587
Entry
112898587         CDS       T07366                                 
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
  KO
K01148  poly(A)-specific ribonuclease [EC:3.1.13.4]
Organism
phai  Panicum hallii (Hall's panicgrass)
Pathway
phai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:phai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    112898587
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:phai03019]
    112898587
Enzymes [BR:phai01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     112898587
Messenger RNA biogenesis [BR:phai03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     112898587
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 112898587
NCBI-ProteinID: XP_025822715
Position
6:38575290..38580715
AA seq 597 aa
MAAPRAAAAAAASAKQVTRRNFAEAVRDLGAHLESCDYVAVAAQKTGAPTGWRRALPVDT
AETAYLKAKLAAESFQPLQIAVCPFLLRNSSPSTLVAYPYNFHIFPRDELQLGMPSYSFS
CQSSYLSTMANDGFDFNMCIYDGISYLSRVQESFARQKVFTPHLRPLLPSQSTSVADSVF
KSRIKSRIMHWRKGYAEPNKKDDGSLVSSLCRLILGGETYGSRPSISIDVCSDQQVQLVL
EAANHISDDLVPLVVPDKAGAARAVCVIFTSSKEDKNLLLMDIQQSTEEKFRGFREVIDL
LSSSQKPIVSYNCLNDLTMMHSKFVAPLPPNMHEFMCSLKMVFSNVVDVSHLWRQIGPLR
KAKNIQAALSYLQRQYFVPIEIKIPEQDGTSGVTKNEQNVLRITKLFAKLSNLLKIGPEY
QLKSGEQYAAVEEYCNVFYPSCMVEDSDDVDFANEPDTAKAVSTDNIIFLWGFRGKSVKE
LKSYLPGLHQIFSEDFEVKLLDKTCSALIFCNSDTAMQLLKEISSESPSLNSFFSEGLKA
AGFEVYRKVCRLGLWDSDLAEALEGVSSEVAASTLSECNSSQIYWNSSLMLDLKEYL
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggctgcccctcgcgccgccgccgccgccgccgcgtcggcgaagcaggtgacgaggcgg
aacttcgctgaggccgtgcgggatctgggggcccacctggagtcctgcgactacgtggcc
gtggcggcgcagaagacgggcgcacccaccgggtggcgccgcgcgctgccggtggacacc
gcggagacggcgtacctcaaggcaaagctcgccgcggagtccttccagccgctccagatc
gccgtctgccccttcctgctgcgcaactcctctccctctacactcgtcgcttacccgtac
aattttcacatatttcctagagatgaacttcagttaggaatgccttcgtacagtttctcc
tgtcaatcttcttatttatcaactatggctaatgatggctttgatttcaatatgtgcatt
tatgatggtatatcttatctatcaagggttcaagaatcctttgcaaggcaaaaggtcttt
actcctcatcttcgtccactattgccatcacaaagcacatcagttgctgattcagttttc
aaaagtagaataaagtcaaggataatgcactggagaaaaggatatgcagaaccaaataaa
aaggatgatggttctttggttagttccctttgtagattaattttgggtggtgaaacatat
ggttccaggcccagtattagtattgatgtctgcagtgatcagcaagttcaactggtcttg
gaggcagcaaaccatatctctgatgaccttgtacctcttgttgttccggacaaagctgga
gctgctagggctgtgtgtgtgatatttactagttcgaaagaggataagaatcttctcctg
atggatatccagcaatcaacagaggaaaaattccgtggatttagagaagttattgatcta
ctatcatcttcacaaaagccaatcgtatcgtacaattgcttgaatgatctgacaatgatg
cactccaaatttgttgcgcctcttccgccaaacatgcatgaatttatgtgttctttaaaa
atggtcttctccaatgttgttgatgtcagccacttgtggagacaaattggccccttgaga
aaagcgaagaatatacaagctgctctcagttacttacaaagacaatactttgtgccgatt
gaaattaaaataccagagcaagatggtaccagcggtgtaacaaaaaatgagcaaaatgtt
ctgagaataacaaaattatttgctaaactaagcaacttactaaagataggtcctgagtac
caattaaaatctggtgagcagtatgctgcagttgaagagtattgtaacgtcttttatcca
agttgtatggttgaagattctgatgatgttgactttgctaatgagccagacaccgcaaaa
gctgtgagcactgataacatcattttcttgtggggcttcaggggaaaatctgtcaaggag
ttgaaatcttaccttcctggcttacatcagatcttctcagaagattttgaggtcaagttg
ttggataagacatgctcagctttaatattctgcaattctgatactgcaatgcagttacta
aaagaaataagctcagaaagcccatcattaaatagtttcttctcagaaggtctgaaagct
gcaggttttgaagtgtacagaaaggtttgcaggttaggactttgggattcagatttagct
gaggccctggagggtgtttcgtctgaagtagctgcttcaacactttctgagtgcaattcc
tctcagatatactggaatagttcgttgatgctagatctgaaagagtatttgtag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (1)   
   Pfam (1)   
All databases (7)   

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