KEGG   Pangasianodon hypophthalmus (striped catfish): 113546771
Entry
113546771         CDS       T05759                                 
Symbol
cwc22
Name
(RefSeq) pre-mRNA-splicing factor CWC22 homolog
  KO
K13100  pre-mRNA-splicing factor CWC22
Organism
phyp  Pangasianodon hypophthalmus (striped catfish)
Brite
KEGG Orthology (KO) [BR:phyp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:phyp03041]
    113546771 (cwc22)
Spliceosome [BR:phyp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    113546771 (cwc22)
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    113546771 (cwc22)
SSDB
Motif
Pfam: MA3 MIF4G Cnd1 HEAT_5MP1_2 DUF7026
Other DBs
NCBI-GeneID: 113546771
NCBI-ProteinID: XP_026802597
Position
Unknown
AA seq 1197 aa
MAAENEAVTDLNSPSKDESSSPGGTCDPEKTTRSSSSSDDSDSDGDERMRSRDEKRRSPS
PDRRRDDADEQPDQDAAPRRSSRSSGSDGDSSSEEDSDDGVMHRMKSSVAHIRRDAQDES
SRPRRRSSSADRNGSGRSYSRSRSRSLSPQRRTDRARRSRDRDGDRRSDRRSSRERDGDR
DRVRSRRGRSASPSQRDKPPADEPPVKKRKEELDPILTRTGGAYIPPAKLRMMQAQITDK
SSLAYQRMSWEALKKSINGLINKVNVSNIANIIQELLQENIVRGRGLLARSVLQAQSASP
IFTHVYAAVVAIINSKFPQIGELILKRLILNFRKGYRRNDKQQCLTASKFVAHLINQNVA
HEVLCLEMLTLLLERPTDDSVEVAISFLKECGLKLTEVSPRGINAIFERLRNILHESEID
KRVQYMIEVMFAIRKDGFKDHPIITEGLDLVEEEDQFTHMLPLEDEYNTEDVLNVFKMDP
DFLENEEKYKAIKKEILDEGSSDSGDDADGSDDEDDEDEDEDAEAGEDQDKVTIFDKTEV
NLVSFRRTIYLAIQSSLDFEECAHKLIKMDFPDSQTKELCNMILDCCAQQRTYEKFFGLL
AGRFCLLKKEYMESFEAIFQEQYDTIHRLETNKLRNVARMFAHLLYTDSIPWSVLECMRM
SEETTTSSSRIFVKILFQELCAYMGLPKLNERLKDTTLQPFFEGLFPRDNPRNTRFAINF
FTSIGLGGLTDELREHLKNAPKMIMTQNQDVESSDSSSSSSSSSSDSSSSGSDSSDSDSS
NDSDDSSSSSGSSDSESDAKRKKASQRGKKHKKSSKHGCPPEERQSKRDQRRDKSEEDRH
RRQDKSRKDSPDKREHATKSSPNVRERGRKDSPEVRERGRRDSPEVRERGRRDLPEVRER
RRGDSPDVRDRGRRDSPDVRDRGRRDSPDVRDRGRRDSPDVRDRGRRDSPDVRDRGRRDS
PDARERGRKDSPDVRARGRKDSPDARDRGRKDSPDVRARGQKDSPDARERRRRDSPDVRE
RGKRDSPDVRDRRRRDSPDVQERRRRDSPDVQERRRRDSPDVQERRRRDSPDVQERRQKD
SPGVRERRRRDSPVARERSRKDSPDRGERKDRQYKNSENEDSRKNKDTKSDSQRERDRRR
SREKERSKSKSRERSSKDVSSKDSYRNGMEREDKENRYRESRRREDRSVERSPRRRR
NT seq 3594 nt   +upstreamnt  +downstreamnt
atggcggcggaaaacgaagcggtgacggatttgaattcgccttcaaaagatgagagctcc
agtccaggaggaacgtgtgatcctgagaagacaacgaggagctccagctcttcagacgac
agcgacagtgatggagacgagcgcatgaggagcagggatgaaaagcgtcgtagcccttct
ccagacagaagaagagatgacgcagatgaacaaccggatcaagacgcagcgccgaggcgg
tcgtccaggtccagcggctcagacggcgacagcagcagtgaggaggacagtgacgatggt
gtgatgcacaggatgaagagcagcgtggcacacatcaggcgtgatgctcaggacgagagc
agcagacccagacgcaggagttcctctgcagacaggaatggcagtggaaggtcgtattcc
cgctctcgctccagatctctgtctccacagagacgcacagacagagcccgcaggtctcgg
gatcgtgatggagaccggcgttccgatcggcgctccagccgtgagcgagatggagatcga
gatagggtcaggtccaggaggggaagatctgcgtctccatcacagagagacaaaccccct
gctgatgagcctccagttaaaaagaggaaggaggagctggaccccatcctgacccgcacc
ggaggagcgtacatccccccggccaagctgcgcatgatgcaggcccaaatcaccgacaag
agcagtctggcgtaccagaggatgagctgggaagcgctgaagaagtccatcaacggtctc
atcaacaaagtaaacgtgtccaacatcgccaacatcatccaggagctgctgcaagagaac
atcgtccgcggcagaggtctgctggcgaggtcagtgcttcaggctcagagcgcttctccc
atctttacccacgtctacgccgccgtggtggccatcatcaactccaaattccctcagatc
ggagagctcatcctcaagaggctcatcctcaacttccgcaaaggctacagaagaaacgac
aaacaacaatgtctcaccgcctccaagtttgtggctcacctcatcaatcagaacgtggct
catgaagtgctatgtttggagatgctgactctgctcttggagcggcccactgatgacagc
gtggaggtggccatcagcttcctgaaggagtgtggcctcaaactcacagaggtttccccc
cgcggcattaatgccatcttcgagcgcctgaggaacatcctgcacgagtcggagatcgat
aagcgcgtgcagtacatgattgaggtgatgttcgctatcaggaaggacggctttaaggac
catcccataattacagaaggcctggacctggtggaggaagaggaccagttcactcacatg
cttcctctagaggacgaatacaacacagaggacgtgctcaacgtcttcaagatggatcct
gacttcctggagaatgaagagaagtacaaggcgattaagaaggaaattctggacgagggg
agcagcgactcgggcgacgatgcagatggcagcgatgacgaggatgatgaggatgaagac
gaagatgcagaagctggagaagatcaagacaaagtcaccattttcgacaagacggaggtg
aacctcgtatcatttcgccgcaccatttatctggccattcagtcaagcttggactttgag
gaatgtgctcacaagctgatcaagatggacttccctgacagccagacgaaggagctgtgt
aacatgatcctggactgctgcgcccagcagagaacctacgagaagttctttggtcttctg
gctgggaggttctgcttgttgaagaaggagtacatggagagcttcgaggccatcttccag
gagcagtacgacaccattcataggctggagaccaacaaactgcgcaacgtggcgagaatg
ttcgcacacctcctctatacagactccatcccgtggagcgttctagagtgcatgagaatg
agcgaggagacgacgacgtcctccagccgtattttcgtcaagatcctcttccaggagctg
tgcgcctacatggggcttccgaagctcaacgagagactcaaggacacgactctgcagccg
ttcttcgaaggcctgttccctcgcgacaacccgaggaacacgagattcgccatcaatttc
ttcacctccatcggccttggtggactcacagatgagctaagagagcatctgaagaacgcc
cctaagatgatcatgacccagaaccaggatgtcgagtcatctgactcttcttcctcctcc
tcgtcctcatcatcagattcctcgtcctcgggcagtgacagcagtgactcggattcctcc
aatgactcagatgactcgtccagcagctccggctcttctgattctgaatcggacgcgaag
cggaaaaaggcgtcccagcgtggaaagaagcataagaagagttctaaacatggctgtcct
ccagaagagagacaaagcaaaagggaccagagacgagacaaaagcgaggaggaccgtcat
agacgacaggacaaatcacgaaaggactcgcccgataagcgagaacatgcaacaaaatct
tctcctaatgtgcgagagcgtgggcgaaaggattcaccagaagtgcgagagcgtgggcga
agggattcaccagaagtgcgagagcgtgggcgaagggatttaccagaagtgcgagagcgc
aggcgaggagactctcctgatgtgcgtgatcgcgggcgacgagactctcctgatgtgcgt
gatcgcgggcgaagggactcgcctgatgtacgtgatcgcgggcgacgagactctcctgat
gtgcgtgatcgtgggcgacgagactctcctgatgtgcgtgatcgcgggcgaagggactcg
cctgatgcgcgagagcgggggcgaaaggactcccctgatgtgcgagcacgcgggcgaaag
gactcgcctgatgcacgagatcgggggcgaaaggactcgcctgatgtgcgagcacgcggg
caaaaggactcgcctgatgcacgagagcgtaggagaagggactcgcctgatgtgcgagag
cgcgggaaaagggattcacccgatgtgcgagatcgcagaagaagggactcacctgatgtt
caagagcgcagaagaagggactcacctgatgttcaagagcgcagaagaagggactcacct
gatgttcaagagcgcagaagaagggactcacctgatgttcaagagcgcaggcaaaaggac
tcccccggtgtgagagagcgcaggcgaagggactctcctgttgcgcgagagcgttcacga
aaggactcgcctgaccggggagagcgcaaggaccggcaatacaaaaacagtgagaatgag
gactcgcgcaaaaacaaggacaccaaaagtgactcgcagagagagagagatcgccggcgc
agcagagagaaagagagatcaaagtcaaaatcacgtgagagaagcagcaaggacgtgtct
tccaaagactcgtacaggaacggaatggagcgggaggacaaggagaaccggtacagggag
tccaggaggagagaggacaggagtgtggagagatcgcccaggagacgcagatag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (9)   

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