KEGG   Paenibacillus sp. JDR-2: Pjdr2_4818
Entry
Pjdr2_4818        CDS       T00977                                 
Name
(GenBank) excinuclease ABC, C subunit
  KO
K03703  excinuclease ABC subunit C
Organism
pjd  Paenibacillus sp. JDR-2
Pathway
pjd03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pjd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Pjdr2_4818
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pjd03400]
    Pjdr2_4818
DNA repair and recombination proteins [BR:pjd03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Pjdr2_4818
SSDB
Motif
Pfam: UvrC_RNaseH_dom UvrC_RNaseH GIY-YIG UVR HHH_5 HHH_2 HHH DUF7508 5_3_exonuc GIY_YIG_2 DUF4602
Other DBs
NCBI-ProteinID: ACT03430
Position
complement(5537753..5539633)
AA seq 626 aa
MDQQQQNTAASRAEAEELIRNKLALLPDQPGCYLMKNGEGTIIYVGKAKVLKNRVRSYFN
GSHNGKTQRLVSEIRDFDYIITSSNMEALILECNLIKQYHPRYNVLLKDDKTFPYIKITN
EKHPRLEVTRRVVKDKGKYFGPYPNAFAAQQTKKLLDRLYPLRKCGTLPDKVCLYYHIGQ
CIAPCEYDVEQGQYDAMIQEITKFLNGGHDAVKAEIHRKMEAAAEELNFERAKEYRDQII
SIDAVIEKQKITMNDALDRDIFGYAVEKGWMCVQILYMRQGKMIERRGTTFPYYGEEYDD
FMTFVTQYYSDNPALPKQILLPLPAEEEEGTAESSTASDEFATMLHNWLKVKVLMPQRGR
KSEAVSMAIDNAKIALADKFRLIERDEERSVRASEGLAEWLGLPEVRRIEAFDNSNIQGT
NPVSAMVVFTDGKPDRKEYRKYKVKTVVGADDYETMREVIRRRYERMLKEQQTPPDLIVV
DGGKGQISAALDILQNELGLYIPVCGLVKDAKHKTAQLMTGDPPEVVPLPRDSQEFYLLQ
RIQDEVHRFAISFHREQRGKSMIASQLDAIPGIGEKRRKLLLKHFGSIKKIKEASIEDFK
PLSIGEKLASQILAALNEEVKDKETE
NT seq 1881 nt   +upstreamnt  +downstreamnt
atggatcagcaacaacagaatacagccgcgagcagggcagaagccgaagagctaatccgc
aacaaattagcgctgcttccagaccagcccggctgttatttaatgaagaacggggaaggc
actattatatatgtaggcaaagcgaaggtgttgaaaaaccgcgttcgctcctactttaac
ggcagccacaacgggaaaacgcagcggctcgtatcggaaatccgcgactttgactatatt
attacctcgagcaatatggaagcactcattctcgaatgcaatctgatcaagcaatatcat
ccaagatacaacgtcctgctgaaggacgacaaaacttttccatatattaagattacgaac
gaaaagcatccgcgtcttgaggttacgcggcgtgtcgtcaaggataaaggcaaatatttc
ggaccgtatccgaatgcgtttgcggctcaacagaccaagaagctgctggaccggctttat
ccgctgcgaaaatgcggaacgctgcctgataaagtctgcttgtattatcatatcggccaa
tgtatcgcgccttgcgagtatgatgttgagcagggccaatacgatgcgatgattcaggaa
attaccaaattccttaacggcggtcatgatgccgtaaaagccgaaattcatcgtaaaatg
gaggcagcggccgaagagcttaatttcgagcgtgccaaggaataccgcgatcagatcatc
agcattgatgcggttatcgagaagcagaagattacgatgaatgacgcactcgaccgcgac
atctttggttatgcggtagagaagggctggatgtgcgtgcagattctgtacatgcgccag
ggtaaaatgattgaacggcgcggcacaactttcccgtattatggggaagagtatgatgat
tttatgacgttcgttacccagtattacagcgataatccggcattgccgaagcagattttg
ctgccgctccctgccgaagaggaagaaggtacggcggaatcgtccacggcctcagatgag
tttgcaacaatgctgcataactggctgaaggtgaaggtgctgatgccgcagcgcggacgg
aagagcgaagccgtctccatggccatcgataatgcgaagattgctctagctgataaattc
cggctgatcgagcgagatgaagagcgaagcgtccgcgcttcggaaggactagccgagtgg
cttggactgcctgaagtccggcgtatcgaggcatttgacaactcgaatatccaaggtaca
aacccggtctcggccatggttgtctttaccgatggcaagccggacagaaaagagtaccgc
aagtacaaggtgaagaccgtggttggagcggatgattatgagacgatgcgtgaggttatt
cggcgccgttacgaaagaatgctgaaggagcagcagactcctccggatttaatcgtagtc
gacggtggcaagggacaaatctccgcggctcttgacatcctgcaaaatgagctggggctg
tatatcccggtatgcggacttgtgaaggatgcgaagcataagacggctcaattgatgacc
ggtgatccgccggaagttgtgccgctgccgcgcgacagccaggaattttatctgctgcag
cggattcaggatgaagtccacaggtttgcgatctccttccaccgcgaacaacgcggcaaa
tcaatgatcgcttcccaactggatgcgattccgggaatcggagagaagcgccgcaagctg
ctgcttaagcattttggttcgatcaagaagattaaggaagcctccatcgaggacttcaag
cctctatcgattggcgagaagctggcttcgcaaattttagctgcgttaaatgaagaggta
aaagataaagaaacggaatga

  All links  
Gene (12)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (23)   

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