KEGG   Planctopirus limnophila: Plim_0674
Entry
Plim_0674         CDS       T01225                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
plm  Planctopirus limnophila
Pathway
plm03410  Base excision repair
plm03430  Mismatch repair
plm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:plm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    Plim_0674
   03430 Mismatch repair
    Plim_0674
   03440 Homologous recombination
    Plim_0674
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:plm03400]
    Plim_0674
DNA repair and recombination proteins [BR:plm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     Plim_0674
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     Plim_0674
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Plim_0674
SSDB
Motif
Pfam: RecJ_OB DHH DHHA1
Other DBs
NCBI-ProteinID: ADG66521
UniProt: D5SR53
Position
877348..879099
AA seq 583 aa
MVSTERRVWQYAHVDQESIRRLAAELQISPLLARVLVARKIHTREMGLKFFSRKLSELHD
PEQLPGISQAADRIVEAIKHQRLITIYGDYDVDGVTATSLLWHCIRLAGGRSEYYIPARL
EEGYGLNSTAIETLAAQDPSQLVVSVDCGITSLIEARRARELGLELIITDHHQFAENFPE
ETILVHPRLPGSSYPFGELCGAGVAFKLAWAVCARLGDGKKASPRMKEFLLSAIGLAAIG
TVADVVPLTGENRVLVHYGLSTIGEKSSIGLKALIKAAGLHEKTSLAADDIGFSLGPRIN
AAGRLGQARLAVELLTTDNEDRAQKLAAYLDELNKQRQSLERKMFKQAKDLVNDHPAWSE
EKALVLTHDEWHAGVIGIVAGKVAESFQRPAILLGPSTSADILQGSGRSFAGFNLHEGLV
ACREHLITFGGHHAAVGMKLSRKHLDTFRASLVDFVSQNHSVEPGSAPLPIDAEVTFQEI
STRAIEELDLLAPFGSANPRPMFAATRVELAAPPKTMGEGGRHLSLLLKQHDKTLRAVAF
GQGEWAEEIAAHSAIHLAFQPIINEFRGQRNVDLHIKDWAPAT
NT seq 1752 nt   +upstreamnt  +downstreamnt
atggtctcgacagagcggcgggtctggcaatatgcacatgtcgatcaagaatccattcgc
aggctggccgcagaactgcagatcagcccactcctggctcgcgtccttgtcgcccgtaag
attcatacccgcgaaatgggtttgaagttcttctcccgcaaactcagcgaacttcacgat
cccgaacaattgcccggcatcagtcaagccgccgaccgcatcgttgaagccattaaacat
cagcgactcatcacgatatacggcgattacgatgtcgatggtgtcactgccaccagcctc
ttatggcattgtatccgcctcgcgggtggtcgctccgaatactatattccagcccgtctc
gaagaaggttacgggctcaacagcacggccatcgaaactctcgcagcccaggatccatcc
cagctcgtcgtcagtgttgattgtggcattaccagtcttatcgaagccagacgcgcccgc
gaactcggcctcgaactgatcattactgatcatcaccagtttgccgaaaatttcccggaa
gaaacgattctcgtccaccctcgtctgcccggtagcagctacccattcggcgagctttgc
ggtgccggcgtcgccttcaaactcgcctgggctgtctgtgctcgattaggggatggcaaa
aaggcttctccccgcatgaaagagtttctcttaagtgccattggcctggcagccatcggt
accgttgccgacgtcgttcccttaacgggagaaaaccgtgttctcgttcactatggcctt
tccaccatcggcgagaaatcctccattggtctgaaggcactcatcaaagcggctgggctt
cacgaaaaaacatctctcgcggcagatgatattggcttttccctgggcccacgaattaat
gctgcaggccgcttagggcaagcccgcctcgctgtcgaactcctgacgaccgataacgaa
gatcgagcgcagaaactggctgcctacctcgatgaactcaacaagcagcgacaatcgctc
gaacgaaaaatgttcaagcaggccaaagatctcgtcaacgatcaccctgcctggagcgaa
gaaaaagcactcgtgctcacccatgacgaatggcatgccggcgtgattggtatcgtcgct
ggcaaagtggctgaaagttttcaacgacctgccattctcctgggcccctcgacttcagcc
gatattctgcaaggctctggccgctcattcgccggatttaatctgcatgaagggctggtc
gcttgccgggagcaccttattacgttcggtggtcaccatgcggcagtcggcatgaagttg
tcccgcaagcatttggatacattccgggcgtcgctggtcgattttgtttctcagaatcac
tcggtcgaaccaggttcagcccctttgccgatcgatgccgaagtgaccttccaggaaatc
agcacccgggctattgaagaactcgatctgctggccccttttggcagtgccaaccctcgc
cccatgttcgccgcgactcgtgtggaactggctgcaccaccgaaaactatgggtgaagga
gggcgccacttatcgctcctgctcaagcagcacgataaaaccttgcgggccgtcgctttt
gggcagggagaatgggctgaagagatcgccgcacactcggcaattcacctcgcctttcag
cccatcatcaatgaattccgcggccagagaaatgtcgacctgcacattaaagactgggcc
cccgccacttaa

  All links  
Gene (28)   
   RefGene (26)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

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