KEGG   Populus trichocarpa (black cottonwood): 7474927
Entry
7474927           CDS       T01077                                 
Name
(RefSeq) AP-2 complex subunit alpha-1
  KO
K11824  AP-2 complex subunit alpha
Organism
pop  Populus trichocarpa (black cottonwood)
Pathway
pop04142  Lysosome biogenesis
pop04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:pop00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    7474927
   04142 Lysosome biogenesis
    7474927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:pop04131]
    7474927
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pop04147]
    7474927
Membrane trafficking [BR:pop04131]
 Endocytosis
  Clathrin-mediated endocytosis
   AP-2 complex
    7474927
Exosome [BR:pop04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   7474927
SSDB
Motif
Pfam: Adaptin_N Alpha_adaptin_C Alpha_adaptinC2 Cnd1 HEAT_2 RRN3
Other DBs
NCBI-GeneID: 7474927
NCBI-ProteinID: XP_002312889
UniProt: B9HQK6
Position
9:complement(11875336..11886541)
AA seq 1018 aa
MALSGMRGLSVFISDIRNCPNKEQERLRVDKELGNIRTRFKNEKGLTPYEKKKYVWKMLY
IYMLGYDVDFGHMEAVSLISAPKYPEKQVGYIVTSSLLNENHDFLRLAINTVRNDIIGRN
ETFQCLALTMVGNIGGREFAESLAPDVQKLLISSSCRPLVRKKAALCLLRLYRKNPDVVN
VDGWSDRMAQLLDERDLGVLTSCMSLLVALVSNNHEAYWSCVPKCVKTLERLARNQDIPQ
EYTYYGIPSPWLQVKTMRALQYYPTIEDPNTRRSLFEVLQRILMGTDVVKNVNKNNASHA
VLFEALALVMHLDAEKEMMSQCVALLGKFIAVREPNIRYLGLENMTRMLMVTDVHDIIKR
HQAQIITSLKDPDISIRRRALDLLYGMCDVSNAKDIVEELLQYLSTADFAMREELSLKAA
ILAEKFFPDLSWYVDVILQLIDKAGDFVSDDIWFRVVQFVTNNEDLQPYAAAKAREYLDK
PAIHETMVKVSAYLLGEYSHLLARRPGCSPKEIFSVIHEKLPTVSTTTIPILLSTYAKIL
MHTQPPDPELQKHVWAIFSKYESCIDVEIQQRAIEYFALSRKGAAVMDILAEMPKFPERQ
SALIKKAEVAEVDTAEQSAIKLRAQQHMSNALVVTDQQPSNGTPQSVGQLSLVKIPSMSG
DEHTSAVQELSQANGTLATVDPQSPSADLLGDLLGPLAIEGPPGAAVQFEPNAVSGLEGV
PIPADDAAAIVPVGKETNSVQPIGNINERFYALCLKDSGVLYEDPNIQIGIKAEWRAQHG
RLVLFLGNKNTSPLLSVRAQILPPAHLKIELSLVPETIPPRAQVQCPLEIMNLHPSRDVA
VLDFSYKFGTNMANVKLRLPAVLNKFLQPITVSADEFFPQWRSLSGPPLKLQEVVRGVRP
LSLIDMANIFTSSRLTVCPGLDPNPNNLIASTTFYSESIRPMLCLIRIETDPADRTQLRM
TVASGDPTLTFELKEFIKEQLVSIPTAPPPPAPPAAPVAQPTNAAALTDPGALLAGLL
NT seq 3057 nt   +upstreamnt  +downstreamnt
atggcgttatcaggcatgagaggactctctgtctttataagcgatattcgaaattgtcca
aacaaagagcaagaaagacttcgcgttgataaagagcttggcaatatccgtactcgcttc
aaaaacgaaaagggcttgactccttatgaaaagaagaaatatgtttggaaaatgctttac
atttacatgctaggctacgatgtagattttggtcacatggaagctgtttccttaatatcc
gcaccaaagtaccctgaaaagcaggttggatacatagtgacatcatctttgctaaatgag
aaccatgattttctcagattagcaataaatacagtgcgcaatgatattattggtcggaat
gaaacttttcagtgcctggctttgactatggttggaaatattggtgggagagaatttgct
gaatcattggcaccagacgttcaaaagttactaatttctagtagctgcagaccacttgtg
agaaagaaggctgcattatgtttgctgcgcttgtacagaaaaaatccagatgttgtcaat
gtagatggctggtcggatcggatggcacagctgttagatgaacgtgatcttggtgttttg
acgtcttgtatgagtcttcttgttgctttagtgtcaaataaccatgaagcatattggagt
tgtgtaccgaaatgtgttaagacactggagcgacttgctaggaaccaggatattccacaa
gaatacacttattatggtattccatctccttggcttcaggttaagacaatgagggctctt
cagtactatccgactattgaagatcctaatactagaagatccttgtttgaggtcttacag
cggatactaatgggaactgatgttgtaaaaaatgtaaataagaacaacgcatcgcatgct
gttctctttgaagcccttgctcttgtaatgcaccttgatgctgaaaaagagatgatgtct
cagtgtgttgccctccttggcaaatttattgccgttcgtgaaccaaatatccgttatctt
ggcttggagaatatgactcggatgttgatggttacagacgtgcatgatatcattaaaaga
catcaggctcagatcatcacctcattgaaagatcctgacatcagtatccgtcggcgtgct
cttgatttgctttatggtatgtgtgatgtttcaaatgcaaaggacatagtggaagaactg
ttgcagtatcttagcacagcagattttgcaatgcgtgaggagttgtctcttaaagctgct
attcttgcagaaaagttttttcctgatttgtcttggtacgtggatgtgatccttcaattg
attgacaaggcgggagattttgtcagcgatgatatatggtttcgtgttgtgcagtttgtt
acaaacaatgaagacctacagccttatgcagcagcaaaggccagagagtatcttgacaag
cctgccatacatgagacaatggtcaaggtcagtgcatatctccttggagagtacagccac
cttttggccagacggcctgggtgtagtccgaaggaaatttttagtgtcatacatgagaag
cttcctactgtatcaactactaccattccaattcttctttccacgtatgctaagatctta
atgcacactcaaccccctgacccagaactacagaaacatgtctgggcaatatttagcaaa
tacgagagttgcattgatgttgagatacaacagcgagcaattgagtattttgcattaagt
aggaaaggtgcagctgtaatggacatattggctgaaatgcctaaattccctgagcgtcag
tctgcattgattaaaaaagctgaggttgctgaagtagatactgcagagcaaagtgctatt
aagttgcgggcgcagcagcatatgtctaatgctttggttgtaacagaccaacaaccttcg
aatgggacccctcaatctgttggccagcttagtctagtaaagattcccagcatgagtggc
gatgagcatacttcagcagttcaagaattgtcccaggcaaatgggactttggctacagta
gatcctcaatctccttcagcagatctcctaggtgatctcttgggtccactggcaattgag
ggccctcctggagctgctgtccaatttgagccaaatgcagtttctggactggaaggggtt
ccaattccagcggatgatgcagcagctattgtacctgtaggaaaggaaactaattctgtc
cagccaattggaaatatcaatgaaaggttttatgctttatgcttgaaggatagtggtgtt
ttatatgaggatccaaacattcagattggtattaaagcggagtggcgagctcagcatgga
cgtcttgtccttttcttgggaaacaaaaacacttctccacttctttctgttcgggctcag
atattaccccctgcccatttaaaaatcgaactctcattggtacctgaaacaattcctcca
cgggcacaggtgcaatgcccgcttgaaataatgaatctccatccaagcagggatgttgct
gttcttgacttctcgtacaagtttggtacaaacatggccaatgtcaagcttcgccttcca
gctgttctgaacaaatttcttcagcctattacagtgtctgctgatgagtttttccctcag
tggagatcactttcaggaccaccactgaagcttcaagaagttgttagaggtgtaagacca
ttgtctctcattgacatggcaaacatatttaccagctctcggctgacagtttgtccaggg
cttgacccaaaccccaataacctgattgcaagtactaccttctactcagagagcatccgg
cccatgctttgcttgattagaattgaaacagatcccgcagaccgaacacagttgcggatg
acagttgcctcaggggacccaacactaacatttgagctgaaggagtttatcaaagaacaa
ttagttagtattccaacagcaccgcctccaccagcaccacccgctgctccagtagctcaa
ccaaccaatgctgcagctttgacggatcctggagctctgctggctggtttgctgtaa

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system