KEGG   Porphyrobacter sp. CACIAM 03H1: CBR61_02995
Entry
CBR61_02995       CDS       T09981                                 
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
porc  Porphyrobacter sp. CACIAM 03H1
Brite
KEGG Orthology (KO) [BR:porc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:porc03032]
    CBR61_02995 (gyrB)
   03400 DNA repair and recombination proteins [BR:porc03400]
    CBR61_02995 (gyrB)
Enzymes [BR:porc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     CBR61_02995 (gyrB)
DNA replication proteins [BR:porc03032]
 Prokaryotic type
  DNA Topoisomerases
   CBR61_02995 (gyrB)
DNA repair and recombination proteins [BR:porc03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      CBR61_02995 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: ASJ90003
UniProt: A0A2Z2P8Q5
Position
610718..613279
AA seq 853 aa
MDDTTNQTPAKLPNSNEYGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVSDNA
IDEALAGHCDLVLIELNPDGSVSVEDNGRGIPTGMHPEEGVSAAEVIMTQLHAGGKFENT
SDDNAYKVSGGLHGVGVSVVNALSEWLELTIWREGKEHWMRFEHGDAVAPLKVVGDAPKS
DRNADANGFKKGTRVTFKASHDTFKNVTEFDFEKLEHRYRELAFLNSGVRIKLRDLRHEE
KLEHDLYYEGGIAAFVKYLDRNKQPLIPSPIAVSAEKDGIGIDVALEWNDSYYENVLAFT
NNIPQRDGGTHLSAFRAALTRTLNNYAERSGMLKKEKVSLAGEDMREGLTAIVSVKLPDP
KFSSQTKDKLVSSEVRSPLETLMGEKMTEWLEENPNEARAIIQKIIDAAAAREAARRARE
MSRKGAMSVASLPGKLADCQERDPAKSELFLVEGDSAGGSAKQGRDRKTQAILPLKGKIL
NVERARFDRIISSKEVGTLIQAMGTGIRDEFNLEKLRYHKIVIMTDADVDGAHIRTLLLT
FFHRQMPEIIKAGHLFIAQPPLFKVAKGRSEVYLKDQAALDRYLVDAGLQGRVLETSGGV
RGAEELRALVDGALRLKNLLAFVPRRYDSGIVEQMALTGALEPGLAGEALAAALARAAGR
LGAGDREARWSAFQREDGTVVFERLWRGVTDVHEIDARFLSSTEAHKLHGLAAAQAEAYA
EPVKLVRAGAEAEEPEPEAPAAADPLAGEAEEAAPAPAATFDGTISRPSQLLEAIFAAGR
KGLSISRYKGLGEMNAEQLWETTLDPEARVLLQVKVEDADVTDEIFTRLMGDIVEPRREF
IQDNALNVANLDV
NT seq 2562 nt   +upstreamnt  +downstreamnt
atggacgacaccaccaaccagacccccgcaaagctgcccaactccaacgaatacggcgcc
gattccatcaaggttctgaagggcctcgatgcggtccgcaagcgccccggcatgtatatc
ggcgacaccgacgacgggtcgggcctgcatcacatggtgttcgaagtcagtgacaatgcc
atcgacgaggcgttggcaggtcattgcgacctcgttctcatcgaattgaaccccgatggc
agcgtttcggtggaggacaacggccgcggcattcccaccggcatgcaccccgaagagggc
gtctcggcggcggaagtgatcatgacccagcttcacgcgggtgggaaattcgagaacacc
tcggacgacaacgcctacaaggtctcgggcgggcttcacggcgtgggcgtctcggtggtg
aacgcgctttcggagtggctcgaactcaccatctggcgcgagggcaaggagcactggatg
cgctttgagcacggcgatgccgtcgccccgctcaaggtcgtgggcgatgcgcccaagagc
gaccgcaatgccgacgccaacggcttcaagaagggcacccgcgtcaccttcaaggccagc
cacgacaccttcaagaacgtcaccgagttcgatttcgagaagctcgagcaccgctaccgc
gagctcgccttcctcaactcgggcgtgcgcatcaagctgcgcgacctcaggcacgaggaa
aagctcgaacacgatctctactatgagggcgggatcgcggccttcgtgaagtatctcgac
cgcaacaagcagccgctgatcccctcgccgattgcggtcagcgcggagaaggacgggatc
ggcatcgacgtcgcgctggaatggaacgattcctactacgagaacgtcctcgccttcacc
aacaacatcccgcagcgcgatggcggcacccacctgtcggccttccgtgcggcgctgacc
cgcacgctcaacaactatgccgagcggtccgggatgctgaagaaggagaaggtgagcctt
gcgggcgaggacatgcgcgagggcctgaccgcgatcgtcagcgtcaagctgcccgacccc
aagttctccagccagaccaaggacaagctggtctccagcgaagtgcgctcgccgctcgag
acgctgatgggcgagaagatgaccgagtggctcgaggagaacccgaacgaggctcgcgcg
atcatccagaagatcatcgacgccgccgccgcacgggaggccgcaaggcgggcgcgcgag
atgagccgcaagggcgcgatgagcgtcgccagcctgcccggcaagctcgccgattgtcag
gagcgcgatccggccaagtccgaactgttcctcgtcgagggcgattccgcaggcggctcg
gcgaagcaggggcgtgaccgcaagacccaggcgatcctgccgctcaagggcaagatcctc
aacgtcgagcgcgcgcggttcgaccggatcatttcctcgaaggaagtcggcaccctcatc
caggcgatgggcacaggcatccgtgacgagttcaatctcgaaaagctgcgctaccacaag
atcgtcatcatgaccgacgcggacgtggacggcgcgcatatccgcaccctgctgctgacg
ttcttccaccggcagatgcccgagatcatcaaggccgggcacctgttcatcgcccagccg
ccgctgttcaaggtcgcgaaggggcgcagcgaggtctacctcaaggatcaggccgcgctc
gaccgctatcttgtcgatgccgggcttcagggccgggtgctcgagacctcgggtggggtg
cgcggcgctgaggaactgcgtgcgctggtcgacggggcgctgcgcctaaagaacctgctg
gccttcgtgccgcgccgctatgacagcgggatagtcgagcagatggcactgaccggcgct
ctggagccggggctggcgggcgaggcgcttgccgccgcgctggcccgcgccgccggacgg
ctgggtgcgggcgaccgcgaggcgcggtggtccgccttccagcgcgaggatgggaccgtc
gtgttcgagcgcctgtggcgcggtgtcaccgacgtccacgagatcgacgcgcgcttcctc
tccagcaccgaggcgcacaagctccacggcctcgctgccgcacaggccgaagcctatgcc
gaaccggtcaagctggtgcgcgccggagccgaagccgaagagcccgaacccgaagccccc
gccgccgccgatccgctcgccggcgaagcggaagaggccgcccccgctcccgccgccacc
ttcgacggcacgatcagccgccccagccagctgctcgaggcgatcttcgccgccgggcgc
aagggcctctcaatcagccgctacaagggtctgggcgagatgaacgcggaacaattgtgg
gaaaccacgctcgacccggaagcgcgcgtgctgctgcaagtgaaggtcgaggatgccgac
gtgaccgacgagatcttcacccgcctgatgggcgacatcgtcgagccgcgccgcgagttc
atccaggacaatgccttgaacgtagccaacctcgacgtctag

  All links  
Gene (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (8)   

Download RDF
DBGET integrated database retrieval system