KEGG   Panulirus ornatus (ornate spiny lobster): 139765713
Entry
139765713         CDS       T10834                                 
Symbol
Cpsf160
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 1 isoform X1
  KO
K14401  cleavage and polyadenylation specificity factor subunit 1
Organism
porn  Panulirus ornatus (ornate spiny lobster)
Pathway
porn03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:porn00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    139765713 (Cpsf160)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:porn03021]
    139765713 (Cpsf160)
   03019 Messenger RNA biogenesis [BR:porn03019]
    139765713 (Cpsf160)
Transcription machinery [BR:porn03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     139765713 (Cpsf160)
Messenger RNA biogenesis [BR:porn03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     139765713 (Cpsf160)
SSDB
Motif
Pfam: CPSF_A Beta-prop_RSE1_1st Beta-prop_RSE1_2nd IF2_N
Other DBs
NCBI-GeneID: 139765713
NCBI-ProteinID: XP_071549604
Position
55:complement(38009913..38181597)
AA seq 1416 aa
MYNLCKITHQALGVELSLYCNFFSHRDKSLVVAGANVIRVFRLVAEVPPRSNKKDDRTGI
LDNSPPKVKLECMATYKLHDNVATMASVSLSPLRDSLLLGFRDAKLSLVEYDPYNHNLRT
VSLHYFEKEDIKGGWVQTVSLPLVRVDPEGRCAAMLIYGRKIVILPFRRDLTTDDIDYST
SYMRGPVLQSYIIDPKDFEAPSIDNIIDMQFLHGYYDPTLMLLYEPIKTFPGRVAVRHDT
CALAAISLNIRQRLHPVIWSITCLPHDCQKLLPVPKPIGGVLLFASNSLTYLTQSVPPYG
VSLNSMGDKNTNFPLRRQEGVVISLDCAYGEFLTEDRLVISLKGGELYVLTLVADSMRSV
RSFHFDKAAASVLTCSMCVCEDQYLFLGSRLGNSLLLRFTEKELSDPMRNKSNVPAEQEP
PTKRRKLDTLGDWIASNVDDIRDDDALEVYGHEDTSTVQLASYNFEVMDSLLNIGPCGDV
AMGEPAFLSEEYDNSVDPCVELVTTSGHGKNGALSILQRSIKPQVLTTFDLPDVEDMWTL
VGKADERRRREGGLQDHSFLILSRADSSLILRTEEEINELEESGFNTTSRTVFAGNVGNN
RYIVQVTSGGVRLLEGTAQIQHVPVDVGSPLVAATLADPYLAVLANDGTLMIFTLVTART
LPPKLTTSKPINAGKYPLQTICAYCDVSGLFTTQYPQDREKDPKIFRSDADIKKELDDED
EMLYGNADISVFDPPKTFDPQASQEKNQNNWWKKWQKDVRPTYWLVGVRENGNLELYTLP
DFRLSYAVRNFWVGHRVLSDSSLNAAAPQIPNALENVPVIHEVLLVGMGNRNLRPVLMAR
VDEDLLMYEVFPFYENLSPAQLKIRMRLIEHNLILREKRSSKNKKRMEEDGVQDRKMDRV
SKFRPFSNISVYSGVFICGPYPHWIFMTVRGELRFHPMSVDGSVKCFAPFRNVNCQNGFL
YFNRKDSLRICLLPTILSYDAPWPVRKVPLRCTPHFIVHHLETKTYCVVTSSSEPTLKIW
KFNGDDKEEVLEERDDRFIQVQAPTFSIQLFSPVNWQMIPNTDYYLDPWEHVTCFKNVIL
AYEGDRSGLRGYLALGTTFCFGEDITCRGRILIFDVIDVVPEPGQPLTKNRLKMLYEGEQ
KGPVTALAHCRGLLVSAIGQKVYIWQLKNTDLVGIAFIDTQIYVHQLISIKSLILAADIC
KSVFLLRFQEENRTLSLVSRDQKPLQVYGIQYLVDNATLAFIASDADKNLVVFTYNPESH
ESSGGTRLIRKGDFHLGSHVNSFFRIRCRVGDVSSDRRAGQMIERRHITMMATLDGSVGY
VLPVSEKTYRRFSMIYNLLVQHLPHIAGLNPKGCCTFQSRYKLNTNPSRAVLDAELIWSF
LHLPAPEKVEIAKKIGAKVDDIIEDLMEIDRMTAHF
NT seq 4251 nt   +upstreamnt  +downstreamnt
atgtacaatttatgcaagatcacccaccaggctttgggtgtggagttgtccttgtactgc
aacttcttcagtcatcgagacaagtctctagttgttgctggggcaaatgtcataagagtg
ttccggctggtggctgaagtaccaccaaggtcaaacaagaaagatgacaggactgggata
ttagataatagtcctccaaaggtgaagcttgaatgtatggcaacttataaattacatgac
aatgtggctacaatggcatcagtatcactctctcctctacgagactctctgctcctgggt
ttccgggatgctaagctctccttggtggagtatgatccttataaccacaatttacgaact
gtgtctcttcactattttgaaaaggaagatatcaagggaggatgggttcaaactgtatct
cttccattagttcgagtcgatcctgaaggaagatgtgcagccatgttgatatatggtaga
aagattgttattttgccatttcgacgagaccttacgacagatgatattgactacagtaca
tcttacatgagaggcccagttcttcagtcatatattattgaccccaaggattttgaagcc
cccagtattgataatattatagatatgcagtttcttcatgggtattatgacccaacactg
atgttactctatgaaccaataaaaactttcccagggagagtggcagtacgtcatgataca
tgtgctctggcagccatctctctcaatatacgacaacgtctacatcctgttatttggtca
ataacatgtcttcctcatgactgtcagaaacttctgccagtacccaagcccattggtggt
gtgttactttttgccagcaactctctcacatatctaactcagtctgttcctccatatgga
gtttccctcaactcaatgggggataagaacacaaacttcccattacgaaggcaggaagga
gtggtaatctctttagactgtgcgtatggagagtttctcaccgaagacagacttgtcatc
tctttgaaaggaggtgaattgtatgttctcaccttagtggcagactccatgagatctgtc
cgaagctttcactttgacaaggctgcagcatcagttctgacatgcagtatgtgtgtttgt
gaagatcagtacctgtttctgggatctcgtttaggcaattctcttctccttcgcttcaca
gagaaggagttgagtgacccaatgcgaaacaagagtaatgttcctgctgagcaagaacct
cctactaaaagaagaaagcttgatacattaggtgattggattgccagtaatgttgatgat
attagggatgatgatgccctggaggtatatgggcatgaagatacttcaactgtccaatta
gcatcatacaactttgaggtgatggacagtttattgaatattggtccctgtggtgatgtg
gcaatgggagagcctgctttccttagtgaagagtatgacaactcagtagatccttgtgtg
gagcttgtgactacctcaggccatggcaagaatggagccttatccatccttcagagatct
attaagccacaggttttaacaaccttcgacctgcctgatgttgaggacatgtggacactt
gtgggcaaagcagatgagcgacggagaagagagggcggtctccaggatcactcatttctt
attctttctcgagctgattcttcccttatattacgtactgaggaggagattaatgaacta
gaagaatcaggcttcaacaccacctcaagaactgtctttgctggcaatgtcggcaataac
agatacattgtgcaggtaacaagtggtggtgtaagacttctggagggtacggcacaaatc
cagcatgtccctgtagatgttggctctccccttgtggctgcaactttggccgatccctac
ttagcagtcttagccaatgatggtaccttgatgatcttcactttggttacagcccggaca
ttaccaccgaaacttaccaccagcaagccaataaatgctggtaaatatcccctgcagaca
atttgtgcatactgtgatgtctctggtttattcacaactcagtatccacaagacagagaa
aaggacccaaagatcttcagatcagatgcagatattaagaaggaattagatgatgaggat
gaaatgctctatggcaatgcagacatctcagtatttgatcctccaaagacctttgaccca
caagccagccaggaaaagaaccagaataattggtggaagaaatggcaaaaggatgttcgc
ccaacatattggttagttggagtgcgtgagaacggcaatcttgaactttacacgctccca
gatttcagactttcatatgctgtcagaaacttttgggttggtcatagagtattgtcagac
agtagcctaaatgcagcggctccccagatcccaaacgctttggagaatgttcctgtcatc
catgaggtgctgctggttggaatgggtaacaggaacctcaggccagtgttgatggcaagg
gttgatgaggatttgctgatgtatgaagtgtttccgttttatgaaaacttgtcacctgca
caactcaaaataagaatgaggttaattgaacataacttaattcttcgtgagaagcgctca
agcaaaaacaaaaagaggatggaggaagatggagtccaagacaggaagatggacagagtg
tccaagtttcgtcccttcagtaacataagtgtatatagtggggttttcatatgtggtcca
tacccacattggatatttatgactgtgcgtggggagctgcgtttccatccaatgagtgta
gatggatctgttaagtgttttgctcccttcaggaatgtcaactgtcaaaatggcttcctc
tattttaaccgtaaggactctctgcgaatctgcttgttgcctacaatcctttcgtatgat
gctccttggccagtgcgaaaagttccactgagatgtacccctcactttattgttcaccat
ttggagacaaagacctactgtgttgttacttcaagctctgagcctacactcaagatctgg
aagtttaatggtgatgacaaggaggaggtacttgaggagagagatgacagattcattcag
gtccaggcacccacattttctattcagcttttttccccagtcaactggcagatgatccct
aacacagactactacttagatccctgggaacatgtcacttgcttcaagaatgtcatccta
gcttatgagggagatagatcaggtctgagaggctaccttgccttaggcacaaccttctgc
tttggcgaggacattacttgccgagggcgtatcctgatatttgatgttattgatgtagtg
ccagaaccagggcagcctctcaccaagaatcgtctcaagatgttgtatgaaggcgagcaa
aagggaccagtaacagctctggcacattgtcgtggcctgcttgtatcagccataggacag
aaggtatacatatggcagttgaagaatactgacttagtgggtattgccttcatagataca
cagatctatgttcaccagttgatctccatcaagagcctcattcttgctgctgacatctgc
aagtctgtgtttctgttgcggtttcaggaagagaacagaacactttcacttgtgtcaagg
gatcagaagcctctccaagtttatggcattcagtatcttgtagacaatgccaccctagca
ttcatagctagtgatgctgacaagaatttggtggtgtttacttataatccagaatcacat
gagagttctgggggaactcgtctcattaggaaaggagatttccatctgggctcccatgtc
aactctttcttcagaattcgctgtagagtaggagatgtttctagtgatcgtcgggcaggt
cagatgattgagcgacggcatattaccatgatggcaacattggatggttctgttggctat
gttctcccagttagtgagaagacttaccgtcgattttccatgatttacaacctgttggtg
cagcaccttccacatattgctggtttaaacccgaaaggatgctgcacattccaaagccgt
tacaagttgaatacaaatccatcgcgtgcagtcctggatgctgaattaatatggtctttt
ctgcacctccccgctccagaaaaagttgaaattgctaagaagataggagctaaggtcgat
gacataattgaggacttgatggagattgatcggatgacagctcatttttag

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (10)   

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