KEGG   Physcomitrium patens (spreading earthmoss): 112279378
Entry
112279378         CDS       T01041                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03030  DNA replication
ppp03410  Base excision repair
ppp03420  Nucleotide excision repair
ppp03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    112279378
   03410 Base excision repair
    112279378
   03420 Nucleotide excision repair
    112279378
   03430 Mismatch repair
    112279378
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ppp03032]
    112279378
   03036 Chromosome and associated proteins [BR:ppp03036]
    112279378
   03400 DNA repair and recombination proteins [BR:ppp03400]
    112279378
DNA replication proteins [BR:ppp03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    112279378
  DNA Replication Termination Factors
   ELG1-RFC complex
    112279378
Chromosome and associated proteins [BR:ppp03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    112279378
DNA repair and recombination proteins [BR:ppp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     112279378
  Check point factors
   HRAD17(Rad24)-RFC complex
    112279378
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 AAA_16 RuvB_N Mg_chelatase AAA_assoc_2 ResIII AAA_11 AAA_24 DNAX_ATPase_lid AAA_5 SLFN-g3_helicase nSTAND3 AAA_14 NPHP3_N AAA_7 AAA_19 AAA_2 RNA_helicase Parvo_NS1 AAA_25 AAA_30 AAA_28 ATPase_2 IstB_IS21 AAA_23 NB-ARC TIP49_C TsaE
Other DBs
NCBI-GeneID: 112279378
NCBI-ProteinID: XP_024369532
Position
3:25044360..25048065
AA seq 338 aa
MAPVMQSTQQWVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTAL
AICHQLFGPELYKTRVLELNASDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFKVLILD
EADSMTEDAQNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNR
IQYICQEEGLKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIVPD
SVLEGLLKACQSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKARITER
LAETDKCLIDGADEYLQLMDVASNTMRALCNQTQECTY
NT seq 1017 nt   +upstreamnt  +downstreamnt
atggcgcccgtgatgcagagcacgcagcaatgggtggagaaatatcggccccggaaggtg
aaggatgtcgcccatcaggaggaggtcgtccgcactctcaccaacacactcgaaacggga
aatttgccgcacctcctattttatggacctccaggcacagggaagaccacaacagcactt
gcgatctgccaccagctttttgggccagagctttataaaacaagagtgctggagcttaac
gctagtgatgaccgtggaatcaatgtggtccggacgaagatcaaggatttcgctggtgtt
gccgttggtgccggtgtgagcggttatccgtgtcctcctttcaaagttcttatactggac
gaagccgactcaatgactgaagatgcacagaatgctctgcggcgcacaatggaaaattac
tcaaaagtcactcgtttttgttttatctgcaattacgttagtcgaatcattgagccattg
gcatcacggtgcgctaaattccgtttcaaaccacttctagaaaatgtcatgcaaaaccgt
atccagtacatttgtcaagaggaaggtttgaagctagatcaggaggctttatctacttta
agcagagtctctgaaggtgatttgcggcgggctatcacgtgccttcagtgtgccgttcgt
ctgtatggttccaatatttctagcaaagagattatcagtgtctctgggatcgtgcctgat
agtgtcctcgaaggacttctgaaagcttgccaaagcgggcaatttgatttggcgcaccaa
gaggttagagatattattgcggaaggccaccctgtatctcaaattctttctcagctattc
gattttgttgtacaatctccaaatattagcgacattcaaaaagctagaatcacagagagg
cttgctgaaactgacaagtgtctcattgacggggcagacgaataccttcagctaatggat
gttgctagcaacaccatgcgtgccttgtgtaatcaaacccaggagtgcacttattag

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (33)   
   Pfam (33)   
All databases (38)   

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