KEGG   Physcomitrium patens (spreading earthmoss): 112288624
Entry
112288624         CDS       T01041                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 21 isoform X1
  KO
K12858  ATP-dependent RNA helicase DDX23/PRP28 [EC:5.6.2.7]
Organism
ppp  Physcomitrium patens (spreading earthmoss)
Pathway
ppp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ppp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    112288624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ppp03041]
    112288624
Enzymes [BR:ppp01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     112288624
Spliceosome [BR:ppp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    112288624
 Complex C
   U5 SnRNP specific factors
    112288624
SSDB
Motif
Pfam: DEAD ResIII
Other DBs
NCBI-GeneID: 112288624
NCBI-ProteinID: XP_024388772
Position
11:complement(8955591..8965489)
AA seq 761 aa
MSSCLTWRDRDRSTVSNRHHHGEHGCSIRKAKGTVHYRLLSRGSAERSDNHYRSHRSRST
SQDWRGGRDEQSRSPVQSPVHRRSRNVSRDWKDAVTSRCRSREKLMSDEHGCRSHSRDRK
RRLDRKETDDSHSQEKKEEEIQREKSKGVEKEKEFSKSKENFGSNQIIEDDQVFPVDGGR
PNPRIQENNRKPESQPLSLEGFLKKCKEDSVQQAKPVFLTKAQRVEIALKRRREEAAEQL
KRNEESCKLLMGTESKSKSHEDRDQPREKSRERGRDHDHEIRQAREQERDRDRRERERER
EEEIKQREKERLQKQAQREHEKELELIKEQYLGAKKFKKRVVKPSEKFRFSFDWESTEDT
SRDMNPIYQNPHEAQLLFGRGFRAGMDRREQKKLATKNVNDLRKEIRLKNGIEEMPEENV
AQKQEDVANLYDAFDMRVDRHWSEKKVEDMTERDWRIFREDYNISNKGSRIPRPMRNWAE
GDLSQELLRAVEKVGYTKPSPIQMAAIPIGLQQRDVIGIAETGSGKTAAFVLPMLTYISK
LPPMTDDIEAEGPYAVVMAPTRELAQQIEDETVKFAHFLVCILSTLCCCWTAIRRYYDIR
VVSIVGGQSIEEQGFKLRQAGYAVLNQCNYVVLDEADRMIDLGFEPQSSRRYSGALFIDL
IFLRKLGEVMGVLDAMPSSNLKPENEDAELDTQKIYRTTYMFSATVPLALERLARKYLRN
PVVVTIGMAGKATDLITQHVMMVKECEKLEKHDTRPSSKKK
NT seq 2286 nt   +upstreamnt  +downstreamnt
atgtcgtcatgtttgacttggcgtgatcgagaccgatcgacggtatcaaatcgacaccat
catggtgagcatggatgctcaatccgtaaggccaagggcacagtgcattacagattgctt
agtagaggtagtgcagaacgtagcgataatcactatcgttcgcatcggagtcgaagtacc
agtcaggattggcgaggagggagggacgagcagagtcggtctccagttcagtcacctgtt
catcgaaggtcaagaaatgtgagtcgtgattggaaggacgcagtcactagccggtgtagg
agccgtgagaagttgatgagtgatgaacacggatgccgaagtcacagtagggatcgcaag
aggaggcttgatcggaaggagacggacgatagccatagtcaagagaaaaaggaggaggaa
atccagagggaaaagagtaagggagttgagaaggaaaaagaattcagtaaatctaaggag
aattttggtagcaatcaaataattgaggacgaccaggtttttcctgtagatggcggcagg
ccgaatccaagaattcaagagaataacagaaagcctgagtcgcagcccctatcattggaa
ggctttttgaagaagtgcaaggaggattcagtgcagcaggcaaagccagtgtttttgaca
aaggcgcagagagtagagatcgcattgaaacgtcgacgtgaagaagcagctgaacagctg
aaaaggaatgaggagtcttgtaagcttttgatggggactgaaagtaaaagcaagagtcat
gaagatagagatcaacctcgcgaaaaatcacgtgaaaggggtcgtgatcatgaccacgaa
attcgccaggctcgcgaacaggagcgtgatcgtgaccgtcgagaaagggaaagagagcgc
gaggaagagataaaacaacgtgagaaggaacgcttacagaaacaggcacaacgtgagcat
gaaaaggaactagagctgattaaggaacaatatttaggtgccaagaagttcaagaagcga
gtggtcaagccaagtgaaaagttccgcttttcctttgattgggagagcacggaagatact
tcaagagacatgaatccaatatatcaaaacccacatgaagctcagcttctattcggtcga
ggttttcgagcaggcatggatcggcgtgaacaaaagaagctggcaaccaagaatgtaaat
gatttgaggaaagaaattcggcttaaaaatggaatcgaggagatgccagaggaaaatgtt
gcacagaagcaggaggatgtagcaaatctgtatgacgcatttgatatgcgtgttgatcgt
cattggtctgaaaagaaggttgaggatatgacggagagagattggcgaattttccgagag
gactacaacatttcgaacaagggttcacgcatcccaagaccaatgcgaaactgggcggag
ggtgatcttagccaagagctattaagagctgtggaaaaagttggatacacaaaaccgtca
cctattcagatggctgccatacctattggacttcagcaacgtgatgtcattggtatagcc
gaaactggttctgggaagacagcagcatttgtattgcccatgctcacctacatttctaag
cttcctccaatgacagatgatattgaagcagaagggccctatgcggtggtcatggcgcct
actagagagctggcacaacagattgaagatgagactgtcaaattcgcacattttcttgtg
tgtatactaagcaccctgtgttgctgctggacagctatacgtcgctattatgacatccgt
gttgtgtcgattgtcggaggtcaatccattgaagaacaaggctttaagttgagacaagca
ggatatgctgttcttaaccagtgcaattatgtagtattagacgaagctgatcgaatgatt
gacctgggctttgaacctcagagcagtagacggtattctggagcactttttattgacttg
atctttttacgcaagttgggagaagtgatgggagttttggatgcaatgccttccagtaat
ctgaaaccggaaaatgaagatgctgaacttgatactcagaagatttatagaacaacttac
atgtttagtgcaactgtgccacttgcactggagcgtttggcccgaaagtatctacgtaat
cctgttgtggtaacaatcggaatggctggcaaggcaacagaccttatcacacagcatgtg
atgatggtcaaagaatgcgaaaaattggaaaagcacgataccagaccgtcctccaagaag
aaatga

  All links  
Gene (3)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (18)   
   RefSeq(pep) (18)   
DNA sequence (23)   
   RefSeq(nuc) (23)   
Protein domain (2)   
   Pfam (2)   
All databases (46)   

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