KEGG   Pseudomonas putida HB3267: B479_21230
Entry
B479_21230        CDS       T02389                                 
Name
(GenBank) uracil-DNA glycosylase
  KO
K03648  uracil-DNA glycosylase [EC:3.2.2.27]
Organism
ppuh  Pseudomonas putida HB3267
Pathway
ppuh03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ppuh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    B479_21230
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ppuh03400]
    B479_21230
Enzymes [BR:ppuh01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.27  uracil-DNA glycosylase
     B479_21230
DNA repair and recombination proteins [BR:ppuh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     B479_21230
 Prokaryotic type
     B479_21230
SSDB
Motif
Pfam: UDG
Other DBs
NCBI-ProteinID: AGA75136
Position
complement(4675327..4676019)
AA seq 230 aa
MTDDDRIKLEPSWKAALRAEFDQPYMHQLREFLRSEYAAGKEIYPPGPLIFNALNSTPLE
QVKVVILGQDPYHGPGQAHGLCFSVQPGVATPPSLVNIYKELQRDLNIPIASHGYLQSWA
EQGVLLLNTTMTVERANAASHAKKGWEFFTDRIIQVVSEQCPNVVFLLWGSHAQSKQKLI
DGTKHLVLKSVHPSPLSAYRGFLGCGHFSRANSFLQQRGLAPINWALPPL
NT seq 693 nt   +upstreamnt  +downstreamnt
atgactgacgacgatcgcatcaaactcgaacccagctggaaggccgccttgcgcgcggaa
ttcgaccagccctacatgcatcagttgcgcgagttcctgcgcagcgagtacgccgccggc
aaagagatctacccgccagggccgttgatcttcaacgcgctcaactcgacgccgctggag
caggtgaaggtggtcatccttggccaggacccttaccacgggccgggtcaggcgcatggc
ctgtgcttctcggtgcaaccgggcgtggccacgccaccttcgctggtcaacatctacaag
gagctgcagcgcgacctgaacatcccgattgccagtcatggctacctgcagagctgggcc
gagcagggcgtgcttttgctcaacacgaccatgaccgtggagcgtgccaatgccgcgtcg
catgccaagaagggctgggagttctttaccgaccggatcatccaggtggttagcgagcag
tgcccgaacgtggtgttcctgctgtggggctcgcatgcgcaaagcaagcagaagctgatc
gacgggaccaagcacctggtgctgaaatcggtgcatccatcaccgttgtcggcttaccgt
gggttcctggggtgcgggcatttcagccgggccaacagtttcctccagcagcgcgggctg
gcgccgatcaactgggcattgccaccgctgtga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (3)   

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