Pendulispora rubella: LVJ94_19545 Help Entry LVJ94_19545       CDS       T10973                                  Symbol ligA Name (GenBank) NAD-dependent DNA ligase LigA   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism prue  Pendulispora rubella Pathway prue03030   DNA replication prue03410   Base excision repair prue03420   Nucleotide excision repair prue03430   Mismatch repair Brite KEGG Orthology (KO) [BR:prue00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     LVJ94_19545 (ligA)    03410 Base excision repair     LVJ94_19545 (ligA)    03420 Nucleotide excision repair     LVJ94_19545 (ligA)    03430 Mismatch repair     LVJ94_19545 (ligA)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:prue03032]     LVJ94_19545 (ligA)    03400 DNA repair and recombination proteins [BR:prue03400]     LVJ94_19545 (ligA) Enzymes [BR:prue01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      LVJ94_19545 (ligA) DNA replication proteins [BR:prue03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      LVJ94_19545 (ligA) DNA repair and recombination proteins [BR:prue03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      LVJ94_19545 (ligA)    NER (nucleotide excision repair)     GGR (global genome repair) factors      LVJ94_19545 (ligA)    MMR (mismatch excision repair)     DNA ligase      LVJ94_19545 (ligA)   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       LVJ94_19545 (ligA) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 Nlig-Ia DNA_ligase_ZBD DUF7575 Motif Other DBs NCBI-ProteinID:  WXB09413 Position 4942602..4944527 Genome browser AA seq 641 aa AA seqDB search MSKSTKEKPEIESLEGAIRHHNHLYWDQAAPEISDVEYDKLVRRLKDLAPDSPVLSEMGP SKRVLGEEFRHKEPMLSLDKCYEPAELEQWAASFEGRVVAMPKFDGIACALHYEGGRLRV AATRGDGSVGDDITVNVLEIKDVPAKIPTKETIEVRGEIYMRLSVFAKFKAAGMANPRNL TAGAIKQKDKAKSAAYELSFAAYDLIGTRADSQVAELEELARFGFAKVDYLVLERNRVME GFEKFTEWRPTLDYEIDGVVYKVDAIKEQRRLGQTSHHPRFAIAYKFQGDSGISVLRQVE WSVARTGAITPVAIVDPVNLSGVTVTRASLHNVAFIGNLGLTLGAHVTLVRRGGVIPNLE NVTTPGTDPVVIPEQCPSCGSPVRRDRDFIFCTTPSTCKSAVIGQLAHYAATIGMLGFGD AILEHGYKAAILRSPVDFYALRWEDIAKFERSGEKIAKKLVAEVDKKRSLELATFLRALG ISELGKHVSAILADRYRTLDAVLEVTEEGLLETHSIGASIAKSVVAGLAEARPLIDALRA HVTIVAPAHHEGDGEGPLANLSFVFTGKMVAFSRSEAEKRVRTLGGAVLSSVTKQLTYLV VGADKSGPKSTKEKAAEKLIGQGAPLKVLSEDELLAMLEGR NT seq 1926 nt NT seq  +upstreamnt  +downstreamnt gtgagcaagagcaccaaggaaaagcccgagatcgaatccctcgaaggggcgatccgccac cacaatcacttgtattgggatcaggcggcccctgaaatctcggacgtcgaatacgacaag ctcgttcggcgcctgaaggatttggcgcccgattcccccgtgctctccgaaatggggccc agtaagcgcgttctcggggaagagttccgccacaaggaaccgatgctctccctcgacaag tgttacgaaccggcggagctcgaacagtgggccgcgtccttcgaaggccgggtggtggcc atgcccaaattcgacggcatcgcctgcgcgctccactacgaaggcggccgcctgcgggtc gcggccacgcgcggcgatggctcggtgggcgacgacatcaccgtgaacgtgctcgaaatc aaagacgttcccgcgaaaatcccgaccaaagagaccatcgaggtgcgcggtgagatttac atgcgcctctccgtctttgcgaagttcaaggcggccgggatggccaacccgcgcaacctg acggcgggggccatcaagcagaaagacaaagcgaaatcggccgcgtacgaactgtccttc gccgcctacgatctcatcggcacgcgcgccgattcgcaagtcgccgagctggaggagctc gcgcgattcgggtttgccaaggtggattacctcgtgctcgagcgcaaccgcgtgatggag ggcttcgagaagttcaccgagtggcgcccgacattggattacgagatcgacggcgtcgtt tacaaggtcgatgcgatcaaagagcagcgccgtctcgggcagacgtcgcaccatccgcga tttgccattgcttacaaattccagggcgattcaggtatttccgttttgcgccaggtggaa tggtcggtggcacgcacgggggcgatcacgccggtcgccatcgtcgatccggtgaacctg tcgggggtcaccgtcacccgcgcctcgcttcacaatgtcgcattcattggcaatctgggt ctgacattgggggcgcacgtcacgctcgtgcgccgcggcggcgtcattcccaacttggaa aacgtgacgacccccgggaccgatcccgtcgtgattcccgagcagtgcccgagttgcggt tcccccgttcgacgcgatcgcgatttcatcttttgcaccacgccgagcacctgcaagagc gcggtcatcgggcagctggcccattatgcggccaccatcggcatgctcggcttcggcgat gcaattttggagcacggctacaaggcggcgattcttcgctccccggtcgatttctacgcg ctgcgctgggaggacattgccaagttcgagcgaagtggcgagaaaatcgccaaaaagcta gtcgcggaggtcgataaaaaacgctccctcgagctcgcgacgttcctgcgcgccctcggc atctcggagctcgggaagcatgtctcggccatcctggccgaccgctaccgcacgctcgac gccgtgctcgaggtgaccgaagaggggctcctggagacgcacagcatcggcgcgtccatc gccaagagcgtcgttgcaggcttggccgaagcacgcccgctcatcgacgccttgcgggcg cacgtcaccatcgtggcgccggcgcaccacgaaggagatggcgaagggcccctcgcgaac ctctcgttcgtcttcaccgggaagatggtcgcgttttctcggagcgaggctgaaaagcgc gtgcgcacgctgggtggtgcagtgctcagcagcgtgacgaagcaactgacgtatctggtg gttggcgccgacaaaagcggtccgaagtccaccaaggaaaaggcggccgaaaagctgatc gggcagggggcaccgctgaaggtgctctcggaggacgaattgctcgcgatgctggagggc cgctaa

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