KEGG   Papaver somniferum (opium poppy): 113346339
Entry
113346339         CDS       T05758                                 
Name
(RefSeq) splicing factor 3B subunit 3-like isoform X1
  KO
K12830  splicing factor 3B subunit 3
Organism
psom  Papaver somniferum (opium poppy)
Pathway
psom03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:psom00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    113346339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psom03021]
    113346339
   03041 Spliceosome [BR:psom03041]
    113346339
   03036 Chromosome and associated proteins [BR:psom03036]
    113346339
Transcription machinery [BR:psom03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     113346339
Spliceosome [BR:psom03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    113346339
 Complex B
    113346339
 Complex C
   U2 SnRNP specific factors
    113346339
Chromosome and associated proteins [BR:psom03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    STAGA complex
     113346339
    TFTC complex
     113346339
SSDB
Motif
Pfam: Beta-prop_RSE1_1st CPSF_A Beta-prop_RSE1_2nd
Other DBs
NCBI-GeneID: 113346339
NCBI-ProteinID: XP_026445668
Position
Unknown
AA seq 1365 aa
MGSLEEDSSSTAAIACSQSRSSNPSEEGTHYLAKCVLPGSAVLHAVYGHLRSSSSFDIVF
GKETSIELVVVGEDGVVQSVCEQTVFGIIKDLSVLRRSEKFCQLNTQEPGKDLLVVLSDS
GKLSFLKFCNEMHRFFPVSHFQLSNPGNSRHQLGHKLAVDNHGCFVAVSAFEERLALFSV
SMLDDSSIINKNIFYPPESEGDITSVVQDVHGTNVSGTIWSMCFISKDVSQSSKGEHNAT
LAIVLNRKGAVSNELMLLEWDTHENAVHVISQYIEAESLAMNIVEVPYSYGFAVLFRVGD
ALLMDLSDPHNPRCVHKICLGLLPIEDGVDDDVAVRALLELGMEMSKGDDPMIIDNENGQ
YTSLFKSICSWSWEPGQNSNPTMFVSLDTGELLTLEISFEFDGSKMNLSEPLYKCLPCKT
LLWVKGDFVVALTEMGDGTVLKFEGGKLSYMSPVQNIAPVLDSVVDCHDDKQDQMFACCG
VAPEGSLRIIRSGISVENLLRTASIYQGITGTWTLRMKVLDSFDSFLVLSFVEETRVLSV
GLSFSDVTDAVGFQPDACTLACGLVGDGLLVQIHRNAVRLCLPTTIAHPEGIPLSAPIYT
SWFPDNVNISLGAVGQNMIIVATSNPCFLFILGARSLSAHHYEIYEMQHVRLQNEVSSIS
IPQRISEYKSSTSVVSLPNISKPCSGLPIGVEISDTFVIGTHRPSVEILSFVPEEGLRIV
ACGIISLSNTLGTAISGCVPQDVRLVLVDRLYVLSGLRNGMLLRFEWPNMSTLPPSLELP
QQSPFMISNMAASFVSPSSSNEQRRDSNILEKAEKTPIHLELIAIRRIGVTPVFLVPLCD
SLDSDIIALSDRPWLLQTARHSLSFASISFQPATHVTPVCSMDCPKGILFVAENRLHLVE
MVHSKRLNVQKFSLGGTPRKVVYHSESRLLLVMRTELSGESCSSDVCCVDPLSGSLLSSF
KLEPGETGKSMQLVKVGDERVLVVGTNRFGGRAIMHTGEAESSKGRLLVLCLEHTLNSVN
SLFREIVGYATEQLSSSSLCSSPEDNGFEGVKLEETEVWQLVLAYQTIIPGVVLAVCPYL
DRYFLASAGNFFYLYGFVNENPQRVRRLAYARTRFTITSLASEFTRIVVGDCRDGVLFYS
YDEEPRRLKQLYCDPVQRLVADCTLMDMDTAVVSDRKGNLTVLSCPNRVEDNASPECNLT
LSCSYYIGETAMSIRKGSYSYKLPVDDTPNGCDIADTILNSSHNSIVASTMLGSVVVFIA
ISREEFELLKGVQARLIIHPLTAPILGNDHNEFRGRGSAAGVSKMLDGDMLTQFLELTSS
QQESILAVPLGLKETGASISTPPPHKSISVNQVVRLLERVHYALN
NT seq 4098 nt   +upstreamnt  +downstreamnt
atggggagtttagaagaagattcatcatctactgctgctattgcttgtagtcaatctcga
tcatcaaatccctcagaagaaggtactcattatctcgctaagtgtgtacttccaggaagt
gctgttcttcatgctgtttacggacatcttcgttcttcatcttcattcgatatcgtattc
ggaaaggaaacttcaattgagttggtggtagtcggtgaagatggagttgtgcaatctgtg
tgtgaacagaccgtatttggtatcattaaggatctttctgttttacggcggagtgagaaa
ttttgtcaactaaatacccaggaaccggggaaagatcttttggttgttctttctgattct
gggaagctttcttttcttaaattttgcaatgaaatgcacaggttctttccggtatcacac
ttccaactttcaaatcctgggaactcaagacatcagctaggacataagttagcggttgac
aatcatggctgttttgttgctgttagtgcttttgaagaacgactggctttgttttctgta
tctatgttggatgacagcagcattattaataagaacatattctatccacctgagagcgaa
ggggatataacgagtgttgttcaggatgtccatggaaccaatgtcagtggcacaatttgg
agcatgtgcttcatttcaaaggatgttagtcaatcaagcaagggtgaacataatgcaaca
ctagcaattgttctgaataggaagggtgctgtgtcgaatgagctgatgctactggagtgg
gatactcatgaaaatgctgttcatgttatatctcagtatatcgaagctgagtctctagca
atgaacattgttgaggttccttactcttatggatttgctgttctgtttagggttggtgat
gctctcttgatggatctcagtgatcctcacaaccctcgttgtgtgcataaaatttgtctt
ggtcttttgcctattgaggacggtgttgatgacgatgttgctgtaagggctttactggag
ttgggaatggaaatgagtaaaggagatgaccctatgattattgataatgagaatggccag
tatacttcactgtttaaaagtatttgctcatggagttgggagccaggacagaattcaaat
cctacgatgtttgttagtttagatacgggggagttgcttactttagaaatttcatttgaa
tttgatggtagtaaaatgaacttatctgagccgctctacaagtgtttaccttgcaagacg
cttttgtgggttaaaggggatttcgttgttgcacttacagagatgggggatgggacagtc
cttaagtttgagggaggaaaactttcttatatgagtccagttcaaaacatcgctccagtt
ttagattcggttgtggattgtcatgatgataaacaggatcaaatgttcgcttgttgtgga
gtggctccagagggttcgttaaggattattcgaagtggtattagtgtggagaatctgttg
cgcactgcctctatttatcaaggcataactgggacttggactttgcggatgaaagtctta
gattcttttgactcttttctcgtgctatcatttgtcgaagagactagggtgctttcggtt
gggttaagcttcagcgatgtgaccgatgcagtcgggttccagcctgacgcttgtactttg
gcgtgtggccttgtaggtgatgggttacttgtccagatacataggaatgccgtgagactt
tgtttgcccacaacaatagctcatcctgaaggtatccctttgtctgctccaatttataca
tcttggttcccggataatgtgaatataagtttgggggcagttgggcagaacatgataatt
gtagcaacatctaatccctgcttcttatttattcttggggccaggtctttatctgcccat
cactatgaaatctatgagatgcagcatgtgagactgcagaatgaagtctcatccatatct
ataccccaaaggatctcagaatacaaatcatcaacctcggttgttagtttaccaaatatt
agtaaaccttgctctggtcttcctattggggttgagattagtgatacttttgtcattggt
acccacagaccttcagtagaaattctctcatttgtacccgaagaagggctaaggattgtt
gcctgtgggattatttccctgagcaacacgcttggaactgctatcagtgggtgtgtcccc
caagacgtgaggctggttttagttgatcggttatatgtactttcaggattgagaaatgga
atgttacttcggtttgagtggccgaatatgtctacgttacccccatcgttggagttaccc
cagcagagcccttttatgatttctaacatggctgcatcctttgtatcaccaagttcaagc
aatgaacaacgtcgagacagcaatatcctcgaaaaggctgaaaaaactcctattcattta
gaattgattgctattcgccgtatcggtgtaacaccagtttttctggttcctttgtgtgat
tcccttgattccgacataattgctcttagtgatagaccgtggcttttgcaaactgcaaga
cacagcttgtcatttgcatctatctcatttcaacctgcaactcatgtcactccagtgtgt
tctatggattgccctaagggaattttatttgtagcagagaaccgccttcatttggtggaa
atggtccacagtaagaggctaaatgtgcagaagttctctcttggtggtactccgcggaag
gttgtatatcatagtgaaagtagattgctgcttgtgatgagaaccgagctaagtggtgaa
tcatgttcatcggatgtatgctgtgttgatccactttctggatcactgctgtcatcgttt
aagctcgaaccaggagaaacaggaaaatcaatgcagttggtgaaggttggagatgaacga
gtcttggtggtgggtaccaatcggtttggtggtcgagctatcatgcacaccggtgaagcc
gaaagtagcaaagggcgtctacttgtcctgtgcctggagcacacgctgaactcagttaac
agtttgtttcgtgaaattgttggttatgccactgagcaactttcaagtagtagtctttgc
agcagtcctgaggataatggttttgagggtgttaaactcgaagagactgaagtgtggcaa
ctagtacttgcttatcaaaccattataccaggagtagtacttgctgtctgcccatatctt
gatcgttactttttagcatctgctggtaattttttttatctatatggctttgtcaatgag
aatcctcaacgagtcagaagactggcttatgcgaggacacgctttacaattaccagtttg
gcttcagaatttactcgaatcgttgtcggtgattgtcgtgatggagttcttttctattcc
tacgatgaggagcctaggagacttaaacagctgtactgtgatccggtacagaggttagtt
gctgactgtacccttatggacatggacactgctgtggtctcagatcgaaagggaaacctt
actgttctgtcatgcccaaatcgggttgaagataatgcaagtccagagtgcaacttgaca
cttagttgttcttactacattggagagacggccatgagcatcagaaaggggtcatattca
tacaaacttccagttgatgatacaccgaacggttgcgatatcgcagacacaatactcaac
tcgtcacacaatagtattgtggccagcacgatgctaggaagtgtagtggttttcattgct
atctccagggaagaatttgagctcctgaaaggtgtgcaagctagactcattattcatccg
ttaactgctcccatcctgggaaatgaccacaacgaattccgagggcgcggttccgcggct
ggtgtgtctaaaatgcttgatggggacatgttaacacaattcttggagcttacgagttcg
cagcaagagtctattctggcagttccacttggtttgaaggagactggagcgtcaatttcg
acgcctcctcctcacaaatcaatctccgtcaatcaggttgttcgcttgcttgaacgggtt
cattatgcccttaactaa

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (3)   
   Pfam (3)   
All databases (9)   

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