KEGG T07273: 121322178

Polyodon spathula (Mississippi paddlefish): 121322178

Entry

121322178         CDS       T07273

Name

(RefSeq) pre-mRNA-splicing factor CWC22 homolog isoform X1

K13100

pre-mRNA-splicing factor CWC22

Organism

pspa Polyodon spathula (Mississippi paddlefish)

Brite

KEGG Orthology (KO) [BR:pspa00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pspa03041]
    121322178
Spliceosome [BR:pspa03041]
Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    121322178
Complex C
   U4/U6.U5 tri-SnRNP related factors
    121322178

SSDB

Motif

Pfam:

MA3 MIF4G Cnd1 HEAT_5MP1_2 DUF7026

Other DBs

NCBI-GeneID:

121322178

NCBI-ProteinID:

XP_041117695

Position

10:complement(34535246..34572775)

AA seq 1022 aa
MEAESNEVGIEMRIHSTTEKEPSNSGNMDKPPSGRSGSSSEEEEHDKGKDKKAEPSDPEK
RPDDRSKKSPPQEKGGRASRSDDSDSSSDSSSGSDSGSSKESSASAGGARKMKSRVSQIT
HNFNEDARDQRKSPSPEYRDGERRRSRSPPDRDEDRGEDRYDRRYDRGRPGTGRYSDRDE
NPRERLREKYPDRDRERERERERTRYPSRERVRDRLPSSERDADLRRRGRSPSPVVEEPP
VKKKKEELDPILTRTGGAYIPPAKLRMMQEQITDKSSMAYQRMSWEALKKSINGLINKVN
VSNIANIIHELLQENIVRGRGQLARSILQAQNASPIFTHVYAAVVAIINSKFPQIGELVL
KRLILNFRKGYRRNDKQLCLAASKFVAHLVNQNVAHEVLCLEMLTLLLERPNDDSVEVAI
SFLKECGLKLTEVSPRGINAIFERLRNILHESEIDKRVQYMIEVMFAIRKDGFKDHPVVP
EGLDLVEEEDQFTHMLPLEDEYNPEDVLNVFKMDPNFLENEEKYKTIKKDILDEGSSDSG
SGDDADGSDEDDDEEEVNEEEGEQEKVTIHDKTEVNLVAFRRTIYLAIQSSLDFEECAHK
LIKMDFPDSQTKELCNMILDCCAQQRTYEKFFGLLAGRFCLLKKDYMESFEAIFKEQYET
IHRLETNKLRNVARMFAHLLYTDSVPWSVLECILISEDTTTSSSRIFVKILFQELCAYMG
LPKLNERLQDVTLQPYFEGLFPRDNPRNTRFAINFFTSIGLGGLTDELRDHLKNAPKMIM
TQKQEVESSDSSSSSSDSDSSSDSESGSSDSDSSSSSNSDSSSSTSSSESSSRSDSDSEH
RKKSSKKKDKGPKTSTSKKRSSEKVPTSKKQASRHSNNAEEQEMSSHKHSSKAHRQKDRP
KDTSTHNRDDHRRSNKDPDRRRNHEFEDKRSDSQKDKENIKNNPYSEHDRDRYRSREEEK
YSSRREERSKETNSRAGSEDGYKNGEGRRAEKFDKESRHSDRSRDTKRTDDRRRESSPRR
RR

NT seq 3069 nt +upstreamnt +downstreamnt
atggaggcagaatcaaacgaagtaggaatcgaaatgagaatacactccacaaccgaaaag
gagccatccaattcagggaatatggacaagcctccaagtggtcggagtgggagctcatca
gaggaagaggagcatgacaagggcaaagataaaaaagcagagccatcagatcctgagaag
aggccagatgacagaagtaagaaaagccctcctcaagagaaaggggggcgtgcttcacgg
agcgatgacagcgatagcagtagtgacagttccagcggctcagacagtggcagtagcaaa
gagagttcagccagtgctggtggggcacggaaaatgaaaagcagagtgtcacaaataaca
cataatttcaatgaggatgcaagagaccaacgcaaaagcccctctccagaatacagggat
ggcgaacgccggaggtctaggtccccaccagaccgtgatgaagatcgtggtgaagatcgg
tatgataggcggtacgaccgtgggcgtcctggcactgggagatacagtgacagagatgaa
aaccctagagagcggttgagggaaaaataccctgatagggacagagagagagaacgggaa
agggagaggacacgctaccccagcagagagagggtccgtgatcgccttcccagcagtgag
agggatgcagatctccgaagaagaggtagatcaccctcccctgttgtggaagagcctcca
gtaaaaaagaagaaagaagagctggatccaatcctgactcggacaggaggagcctacatt
ccacctgccaagctccggatgatgcaggagcaaatcactgacaagagcagtatggcatat
cagaggatgagttgggaagccttgaagaagtcaatcaatggtctcatcaacaaagtgaat
gtctcaaacatagccaatataattcatgaacttctacaagagaacattgtgagaggaaga
ggtcagctggcaaggtcaatcttgcaagcacagaatgcctctccaatattcacacatgtg
tatgcggcagttgtagcaattattaattcaaagtttccgcagattggagagctagtgctc
aaaagattaattctcaatttccgaaaaggatatagaagaaatgataagcaactttgcttg
gcagcatccaaattcgtggcccacctcgttaatcagaatgtggcccatgaagttctctgc
ttggaaatgctcactctccttttagagcggcctaacgatgacagcgtggaagtagcgatc
agttttctgaaagagtgtgggctcaaactgaccgaagtgtcccctcgtggcattaatgct
atatttgaacgtttacgcaacattcttcatgaatctgagattgacaagcgtgtccagtac
atgatagaagtcatgtttgcaattcggaaagacggctttaaggatcatcctgtagttcct
gaaggccttgatctagtagaagaagaagatcagtttactcatatgcttcctttggaagat
gagtacaacccagaggatgtgctcaatgtcttcaagatggaccctaatttcttggaaaat
gaagagaagtataaaacaattaaaaaggatatccttgatgaaggcagcagtgactcaggg
tctggggatgatgcagatggcagtgatgaagatgatgacgaggaggaagtgaatgaagaa
gaaggagaacaagagaaagttaccattcatgacaagactgaggtgaacttggttgccttt
cgacgtaccatctatcttgctattcagtcaagcttggactttgaagaatgtgcccataaa
ttgataaagatggattttccagacagccaaacgaaagaactctgcaatatgatactagac
tgctgtgcacagcaaagaacatatgagaaattctttggcctgcttgctgggcgtttttgt
ctgttaaaaaaagactacatggagagttttgaagcaatattcaaagaacaatacgaaacc
attcaccgacttgaaaccaataaattacgaaacgttgccaggatgtttgctcatctgtta
tatacagattctgtcccttggagtgtcctggaatgtatactaataagtgaagataccact
acgtcatctagtagaatctttgtgaagattctgttccaggagctttgtgcttacatggga
cttccaaaactcaatgaaaggcttcaagatgtgactttacagccctactttgagggacta
tttcctcgagataacccaaggaacacaagatttgccatcaatttctttacctctattggt
ctgggaggtctaacagatgagcttcgagaccatttaaaaaatgctcccaaaatgatcatg
acgcagaagcaagaagtggaatcatccgattcatcttcatcctcctcggattcggactct
tcctctgattcagaaagcggcagcagtgacagcgatagcagctcatccagcaacagtgat
tcttcctctagtactagcagcagtgaaagcagcagcagatcagattcagattcagagcac
aggaaaaaatcaagcaagaagaaagacaaaggacctaaaacatctaccagtaaaaaaaga
tcttcagaaaaggtgcctaccagcaagaaacaggctagtaggcatagcaacaatgctgaa
gaacaagagatgtcctcccataaacacagcagcaaagcccatagacaaaaggatcgtccg
aaagatacttcaacacataacagagatgatcacaggcgcagtaacaaggaccctgaccgt
cggcgaaaccatgagtttgaagacaagcgctctgactctcagaaagacaaagagaacatt
aaaaataacccctactctgaacatgacagagacagataccggagccgggaggaggagaag
tacagtagcaggagagaagaaaggtcaaaggagacaaactcaagagcaggtagtgaggat
ggctacaagaatggcgaaggaaggcgagcagaaaaatttgacaaggagagtagacactct
gatagatctagggacaccaaaagaacagacgataggaggagggaaagttctccacgtaga
cggagatag

All links

Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (13)   

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