KEGG   Pseudoliparis swirei (Mariana hadal snailfish): 130207043
Entry
130207043         CDS       T09868                                 
Symbol
ggps1
Name
(RefSeq) geranylgeranyl pyrophosphate synthase
  KO
K00804  geranylgeranyl diphosphate synthase, type III [EC:2.5.1.1 2.5.1.10 2.5.1.29]
Organism
pswi  Pseudoliparis swirei (Mariana hadal snailfish)
Pathway
pswi00900  Terpenoid backbone biosynthesis
pswi01100  Metabolic pathways
Module
pswi_M00367  C10-C20 isoprenoid biosynthesis, non-plant eukaryotes
Brite
KEGG Orthology (KO) [BR:pswi00001]
 09100 Metabolism
  09109 Metabolism of terpenoids and polyketides
   00900 Terpenoid backbone biosynthesis
    130207043 (ggps1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01006 Prenyltransferases [BR:pswi01006]
    130207043 (ggps1)
Enzymes [BR:pswi01000]
 2. Transferases
  2.5  Transferring alkyl or aryl groups, other than methyl groups
   2.5.1  Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
    2.5.1.1  dimethylallyltranstransferase
     130207043 (ggps1)
    2.5.1.10  (2E,6E)-farnesyl diphosphate synthase
     130207043 (ggps1)
    2.5.1.29  geranylgeranyl diphosphate synthase
     130207043 (ggps1)
Prenyltransferases [BR:pswi01006]
 Terpene biosynthesis
  Prenyl diphosphate synthase
   130207043 (ggps1)
SSDB
Motif
Pfam: polyprenyl_synt
Other DBs
NCBI-GeneID: 130207043
NCBI-ProteinID: XP_056291413
Position
17:7300835..7323304
AA seq 315 aa
MDGNSDTASERILLEPYKYLLQLPGKQVRTKLSQAFNHWLNVPEDKLQGIIQVTEMLHNA
SLLIDDIEDSSTLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLEHPEAVRLFTRQL
LELHRGQGLDIHWRDTYTCPTEQEYRNMVLQKTGGLFGLAVGLMQLFSDWKQDLKPLLDT
LGLFFQIRDDYANLTSREYSESKSFCEDLTEGKFSFPTIHAIWSQPESTQVQNILRQRTD
NVDIKRYCVDYLEKVGSFAYTRQTLRDLEAEVYRLIGEFGGNPQLESLVKHLSRMHREPE
ATAESRMEPRSSRIH
NT seq 948 nt   +upstreamnt  +downstreamnt
atggatggcaactcggacaccgcctctgagcgaattctgctggaaccatacaagtacttg
ttgcaactcccaggaaagcaggtgaggacaaaactatcacaagcatttaaccactggttg
aatgttccagaggacaaactgcaggggatcatccaggtcactgaaatgctgcacaacgcc
agcttgctcatcgacgacatcgaggacagctccacgctgcggcggggcttcccggtggcc
cacagcatctacggcattccctccgtcatcaactccgccaactacgtctacttcctgggg
ttggagaaggtgctgaccctggagcaccccgaggctgtccgactgtttacccggcagctg
ctggagctgcaccgtggtcagggcctggacatccactggagggacacctacacctgcccc
accgagcaggagtaccgcaacatggtgctgcagaaaaccggaggtctctttggtctggcg
gtgggcttgatgcagctcttctccgactggaaacaggacctgaaacccctcctggacacg
ctgggcctgttcttccagatccgcgacgactacgccaacctgacctcccgcgaatacagc
gagagcaagagcttctgcgaggacctgacggagggcaagttctcgttccccaccattcac
gccatctggtcgcaacccgagagcacccaagtgcagaacatcctgaggcagcgcacggat
aacgtggacatcaagcgctactgtgtggactacctggagaaggtgggctcgtttgcctac
acccggcagactctgcgggacctggaggcggaggtgtaccgcctcatcggggagtttggg
ggaaaccctcaactggagagcctcgtcaagcacctcagcagaatgcaccgtgagcctgaa
gccacggccgagtccaggatggagccacgctcgagccgcatccactga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (6)   

Download RDF
DBGET integrated database retrieval system