KEGG   Pseudoalteromonas tetraodonis: PTET_a3233
Entry
PTET_a3233        CDS       T05282                                 
Symbol
hfq
Name
(GenBank) host factor-I protein
  KO
K03666  host factor-I protein
Organism
ptd  Pseudoalteromonas tetraodonis
Pathway
ptd02024  Quorum sensing
ptd03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptd00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PTET_a3233 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    PTET_a3233 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptd03019]
    PTET_a3233 (hfq)
   03036 Chromosome and associated proteins [BR:ptd03036]
    PTET_a3233 (hfq)
Messenger RNA biogenesis [BR:ptd03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     PTET_a3233 (hfq)
Chromosome and associated proteins [BR:ptd03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    PTET_a3233 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: ATD04452
Position
I:complement(3092179..3092442)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIFLVNGIKLQGKIQSFDQFVILLENTVNQMVYKHAIS
TVVPARAVNFQGVQGNEDTEEPEAGNF
NT seq 264 nt   +upstreamnt  +downstreamnt
atggcaaaaggccaatcgttacaagacccatttttaaatgcactacgccgtgagcgcatt
ccagtatcaatttttttggtaaatggcataaaattacaaggtaaaattcagtcatttgac
caatttgtaattttgctggaaaacactgttaaccaaatggtgtataaacatgcaatttct
acagttgtacctgcacgcgcagtcaacttccaaggtgttcagggaaatgaagacactgaa
gaacctgaagctggaaacttttaa

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