KEGG   Paenibacillus tianjinensis: JRJ22_11260
Entry
JRJ22_11260       CDS       T07842                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
ptj  Paenibacillus tianjinensis
Pathway
ptj02024  Quorum sensing
ptj03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptj00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JRJ22_11260 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    JRJ22_11260 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptj03019]
    JRJ22_11260 (hfq)
   03036 Chromosome and associated proteins [BR:ptj03036]
    JRJ22_11260 (hfq)
Messenger RNA biogenesis [BR:ptj03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     JRJ22_11260 (hfq)
Chromosome and associated proteins [BR:ptj03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    JRJ22_11260 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 Flag1_repress
Other DBs
NCBI-ProteinID: QSF47089
Position
complement(2565829..2566050)
AA seq 73 aa
MESLKLQERLLNQCISTKVPVTIFTTNGVKMQGLVTSYDAYTITLQGQGDGRQNVLFKSA
VSTIVPLKPVSLK
NT seq 222 nt   +upstreamnt  +downstreamnt
gtggaaagtctaaaattacaggaacgtttgttgaaccagtgtatttcaacaaaggtgccc
gtgacgatttttacaaccaatggggtcaagatgcagggactcgttacctcatatgacgct
tatacaattactctgcagggccagggtgatggcagacagaacgttttgttcaaatctgcg
gtctcgacaatcgtgccgttaaagcccgtctcgcttaaataa

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