KEGG   Paramecium tetraurelia: GSPATT00033515001
Entry
GSPATT00033515001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03020  RNA polymerase
ptm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GSPATT00033515001
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSPATT00033515001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptm03021]
    GSPATT00033515001
   03400 DNA repair and recombination proteins [BR:ptm03400]
    GSPATT00033515001
Enzymes [BR:ptm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     GSPATT00033515001
Transcription machinery [BR:ptm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     GSPATT00033515001
DNA repair and recombination proteins [BR:ptm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      GSPATT00033515001
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_6 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 5016844
NCBI-ProteinID: XP_001431060
Genoscope: GSPATT00033515001
UniProt: A0BYP5
Position
undetermined
AA seq 1750 aa
MRQSGADFTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQTNELDGTPKQNGLNDL
RMGVNTNAQKCKTCGETKYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQ
SEDAWQSFQKAKEHRLNRKRLNEIVKLLGRIEKCETSKHKQEENQGNDDFCGEKIPTRIQ
AINGQIKIQYNTKEAAKELTAERCLEIFKKIRDEDAIILGFTKDSRPRDLIIKFLLVMPP
QVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAERVRLAPELMREVAKIIDSEK
AGKIKMKSTQPLKSIRARLKGKEGRFRQNLMGKRVDFCARSVISPDANLGMDELGVPQIV
ADQLTIPEEVTEYNLERVIQLAKTNKIKYVIVPITDPRSKQRKFQALYFDFTDTEDQIRQ
KINQGVIVERCLQDGDFVLFNRQPTLHRMSMMGHRVRILPYSTFRLNLSVCTPYNADFDG
DEMNMHVPQSYETIAELKYLAHVPRQIVTPKSNQPVMGIVQDSLLGCCLFTQRDTFLTRD
QVMHLMMWNEQFTGELPMPAILKPQELWTGKQIMSMIIPQSINTERGIREDDLRKPNWNA
DDKSLCIQRGSLVSGIFNKELVGQGAGSVVHLCWLDLGAEKTLEFMTSCQRIVNNWLIMH
SFTVGCQDIAPHINLVAETEKRSKEQDEEYIKLLQIFLDAKKIQDNRYHQKGKRIMDSFE
YSFNMKLNKVRDDINSKVTETIDQIRNCMYKMIWAKSKGEASNLAQITSLVGQQNLESKR
IQFGFAYRTLPHFSKFDYGPEARGFVASNFFKGLKPTEFFFHTMGGRDGLIDTAVKTSRT
GYIQRKLIKAVEDVFVRYDSSCRDSVGAVYQFHYGEDKMAAEFIEHQEIKCVNLSNAQLE
EKYELIKEQWFGSEIRQKYQNILTEDVIKDIEEDFEGQALLKGEFDEIKKIRNELRRLFL
IDSAPKEELFTHYYLVVNIERIISTIKINKKISDREKCRLNPIYVTQQVDELIQKVDKLL
SYDLEERKDCINLFRTHLKVSLASKDLCCRHRLTPEAFQELISEIIYKLKKSMAHPGEAV
GAIAAQSLGEPTTQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIYFDPP
LEYAELELKDDKDKKSYLKTEQLVHPHKQDDFTQSMLVQMQGRILGQTFGQYIIKSEIYY
QSDPNNPLHITEDQEDNFTDGIFDQDEAKYKWILFLHMDHQKILSNLETWDKIRDSIPKI
LDETQVKFGISSQNTIVDPDSMNHKYIQIKYFHDYADQKKFKPERGKGNFDDEIAFDEEN
KTKTYVDTPYTILKRLEETIRGYSLGGISKITRILHSQIEKQFYINNKTGGFLKQANVDG
KGKWKIIEKYLETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKI
FNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAV
FSEIDHMRGLSENIIFGQLCPHGTGCFELMVNAKNVKEFKLKSSHADKFTQGGEYLAEQS
PYDQNQQTPLMLNTPGPGVSQGFIENSPYTPYHKSPANFATPFGREYTPNSSHCSPFYPN
TPLMPNDPYQLSPVGSDSGIQQSVQKQANVSDSHSPGSPHYTSHTNSPSPSYRSSERATS
GQRSSSPILNSSRSPNYTSSVYNSPLSPTNTGSPRVPTGSPHSPQGSIFTTYSPVYQPGG
GTGNQYEQEQ
NT seq 5253 nt   +upstreamnt  +downstreamnt
atgagacaatcaggcgctgatttcacttactccactgctccaatcgccaaggtcaggcgt
gtggaatttgggttgatgagtcatgagctcattaaggaatggacaggagacatagaaata
aaggagctacagacgaacgagcttgatggaacgccaaaataaaatggtttaaacgacctt
cgaatgggtgtgaatacgaatgcttagaaatgcaagacatgtggagagacgaagtattgc
cagggccattttggaagaattgaactgaataagccagtataccatgtggggttcttgcag
atagtgaagaaggtattgaagtgcatatgccacagttgtggtaaattgagacagccacaa
tcagaagatgcttggtaatccttttagaaggccaaggaacatagattgaatcgcaagaga
ttgaacgaaatagtgaaattgttgggtaggatagagaaatgcgagactagcaagcacaag
taggaggagaatcaggggaatgacgacttttgtggagagaaaattcctactagaatttaa
gccataaatggataaataaaaatttaatataacaccaaagaggctgcaaaggaattgaca
gcggagagatgtttggagatattcaagaagatcagagacgaggatgcaatcatattggga
ttcacaaaagattcacgacctcgagacttgataataaaattcttattagtgatgccaccc
taggtgagaccagctatcgagatgaatccagcgagaatagcccaagatcaatatacccaa
atttacaaatccatattacagaagaacaacgaaatcgccaattgcagtagtgatgctgag
agagtaagattggctccagagttgatgagagaagtggccaagatcatagattcggagaag
gctgggaagataaagatgaaatccacttagccattgaagagtatcagagcaagattgaag
ggtaaggaaggtagatttagacagaacttgatgggtaagagagtagatttctgtgctcgt
tcagtcatatctccggatgcaaatttggggatggatgagttgggagtgcctcagatagtg
gcagatcaattgacaattcctgaggaggtgacagagtacaatttggagagagtaatttaa
ttggccaagacgaacaagatcaaatatgtgatagtgcccataacagacccaaggagcaaa
tagaggaagttttaggctttgtattttgatttcacagacactgaggattagattagatag
aagatcaatcagggagtcatagtggagagatgtttgtaggatggtgatttcgtgttattc
aacagacaacccactctacatagaatgagtatgatgggacatagagtcaggatcctccct
tattctacatttagattgaatttgtctgtgtgtactccatacaatgcagatttcgatgga
gatgaaatgaatatgcatgttcctcaatcatatgaaacaatagcagaattgaaatacttg
gcccacgttccaagatagattgtaacaccgaagagtaatcaaccagtcatgggtattgtg
caggattctttgcttggatgttgtttgttcacttagagagatacattcttgactagagat
taagttatgcatttgatgatgtggaatgagtaattcactggagaattgcctatgcctgct
atattgaaaccttaggaattgtggacagggaagtagatcatgtctatgattattccgcag
tcgatcaacactgaaagaggtatcagagaagatgatctcaggaaacccaattggaatgcg
gatgacaagagtttgtgtattcagagaggtagtttggtgagtggaattttcaataaggaa
ttggtgggatagggtgcaggttcagtggtgcatctttgttggcttgatttgggagctgag
aagacattggagtttatgacttcgtgtcagagaatcgtgaataattggttgatcatgcat
tcatttacagtgggatgtcaagacatagctccacacatcaatttggtagctgaaactgaa
aagagaagtaaggagcaggatgaggaatatattaaattgttgcaaatctttttagatgcc
aagaagattcaagataatcgttatcatcagaagggtaagagaattatggattcattcgaa
tactctttcaatatgaaattgaataaggtgagagatgacatcaattccaaagtcacagaa
accattgatcaaattcgtaattgcatgtacaagatgatttgggccaagagtaaaggagaa
gcatccaatttggctcaaattacatctctagtcggacaacagaacttggaatctaagaga
atctaatttggttttgcctacaggaccttgcctcatttctctaaattcgattatggtcct
gaagccagaggatttgtggctagcaacttcttcaaaggactcaaacctactgaattcttt
ttccatactatgggtggtagagatggtctgattgatactgctgtcaaaacaagtagaact
gggtatattcagaggaagttgatcaaagctgttgaggatgtctttgtcagatatgattca
tcttgcagagattcagtgggagctgtctatcaattccattacggagaagacaaaatggct
gctgaatttattgagcattaggaaatcaagtgtgttaatttaagcaatgctcaattggaa
gagaagtatgaattaatcaaggaacaatggtttggaagtgaaatcagacagaaatatcaa
aacatactaacagaggatgtcattaaggatattgaggaagattttgaaggtcaagccttg
ttgaagggagagttcgatgaaatcaaaaagatcagaaatgaattgcgtagattattcttg
attgattctgctccaaaagaggagttgttcactcattattatttggtggtaaacatagag
agaatcatttcaacaatcaaaatcaataagaaaattagtgacagagagaaatgtagattg
aatcctatctatgttacataataagttgatgaactcatctagaaagttgacaagttgttg
agttacgatttggaagaaagaaaggattgcattaatttatttagaactcacttaaaagtg
tccttggctagcaaagacttatgttgcagacatagattaacaccagaggcattccaagaa
ttgatctctgaaattatttataaactcaaaaagagtatggctcatccaggtgaagctgta
ggtgccattgctgcttaatctctaggagaacctaccacacaaatgactttgaacaccttc
cacaaatctggtgtcactggtgataagaatgtgaccttgggtgtcccaagattataagaa
ttgctggatgccagtaagaaaaccaagactcccagtttaaccatctattttgatcctcct
ctggaatatgctgagttggaattgaaagatgacaaagacaagaagagctatttaaagact
gagcaactcgttcatcctcataaacaagatgactttacttagagtatgttagtgtaaatg
caaggcagaattcttggttagacctttggacaatacattatcaagagtgaaatctattac
tagagtgatcccaacaatccattacacatcaccgaagatcaggaagataatttcactgat
ggcatttttgattaagatgaagccaaatataagtggattctctttttacatatggatcat
caaaagattctgtccaatttagaaacttgggataaaattagagatagcattccaaagatc
ctagatgaaacctaagttaaatttggaatctcctctcaaaatacaattgtagatccagat
tccatgaatcacaagtacattcaaatcaaatactttcatgattatgctgactagaagaaa
tttaagccagaaagaggaaagggcaatttcgatgatgaaattgctttcgatgaagaaaac
aaaactaaaacctatgtcgatactccttacacaattctgaagagattggaagaaaccatc
agaggctattccttgggaggtatcagcaaaattacaagaattcttcactcccaaattgag
aaacaattctacatcaacaacaaaactggaggattcttgaaacaagcaaatgtggatggc
aaaggtaaatggaaaatcattgaaaaatacttagaaacagaaggaaccaatctcaaagaa
attcttagattggaacacgttgatcaaagaagaaccacaaccgatgatgtctatgaaata
tcctaagtgttgggaatagaagctgccagagctgctcttgttggtgaaaccagaaagatc
ttcaatcactatggtatctacatcaattatagacatctctatctattatatgactggatg
actcacagaggcagacttacagctgtcaacagaaatggtattaacagaatccctgaggtg
agtgttctccgtaaaagttctttcgaagaaacagtagaaatcctctatgatgctgctgtc
ttctcagaaatcgatcacatgagaggattgagtgaaaacatcatatttggataattgtgt
ccccatggaactggttgctttgaacttatggtcaatgccaagaatgtcaaagaattcaaa
ttgaaatccagtcatgctgacaaattcacccaaggaggtgagtatcttgctgaacaatct
ccctatgattaaaatcaacaaactcctctcatgcttaacactccaggacctggtgtttcc
caaggcttcatcgagaactcaccctacactccatatcacaaatctcctgccaattttgcc
actcctttcggcagagaatatactccaaattcgagtcattgttccccattttatccaaac
actcctcttatgccaaatgacccatatcaactaagtcctgttggctcagattcaggaata
caacaatcagtttaaaaataagccaatgtcagtgacagtcacagtcctggatcccctcat
tacaccagtcatactaactccccaagtcccagttacagaagcagcgaaagagccacctct
ggccaaagatcttcgagtcctattctaaattcctccagaagtcccaattatactagtagc
gtatacaattcgcctctttcaccaaccaacactggaagtcctcgtgttccaactggatct
cctcattcaccccaaggttctatctttacaacttacagtccagtctatcaaccaggagga
ggcacaggcaatcaatacgaataagaataatga

  All links  
Gene (63)   
   RefGene (59)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   GENOSCOPE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (72)   

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