KEGG   Puccinia triticina (wheat leaf rust): PtA15_6A745
Entry
PtA15_6A745       CDS       T09180                                 
Name
(RefSeq) uncharacterized protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ptrc  Puccinia triticina (wheat leaf rust)
Pathway
ptrc03008  Ribosome biogenesis in eukaryotes
ptrc03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptrc00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    PtA15_6A745
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PtA15_6A745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptrc03019]
    PtA15_6A745
   03009 Ribosome biogenesis [BR:ptrc03009]
    PtA15_6A745
   03016 Transfer RNA biogenesis [BR:ptrc03016]
    PtA15_6A745
   03036 Chromosome and associated proteins [BR:ptrc03036]
    PtA15_6A745
Messenger RNA biogenesis [BR:ptrc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     PtA15_6A745
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     PtA15_6A745
Ribosome biogenesis [BR:ptrc03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    PtA15_6A745
Transfer RNA biogenesis [BR:ptrc03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    PtA15_6A745
Chromosome and associated proteins [BR:ptrc03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    PtA15_6A745
SSDB
Motif
Pfam: XRN_M XRN_N XRN1_D1 XRN1_D2_D3 SH3_12 KH_N4BP1_2nd
Other DBs
NCBI-GeneID: 77811378
NCBI-ProteinID: XP_053021670
Position
6A:join(6461240..6461243,6461322..6461332,6461436..6461508,6461608..6461683,6461782..6461908,6462003..6462117,6462184..6462293,6462394..6463476,6463559..6463712,6463786..6463907,6464005..6464149,6464251..6464996,6465061..6465192,6465268..6465570,6465647..6466116,6466194..6466872)
AA seq 1449 aa
MGVSKFFRWMSERYPFVLQLVEENRIPQFDNLYLDMNGIIHHCSHPNEGSAHFRITEEDI
YLAIFSYLEHLFALAKPQKVFFLAVDGVAPRAKMNQQRSRRFKTAKENQELIKKAIRKGE
KLPDTTGFDSNCITPGTPFMARLSEQLKYFINKKVSEDSAWQSVQVIFSGHDVPGEGEHK
IMEYIRLSKAQEDYNPNIRHCVYGLDADLIMLGLLSHDPHFCLLREEVKFSAQKSSSKGL
ENQKFYLLHISLVRDYLDWEFASLRQVKTLDYDLERIIDDFILLCIFVGNDFLPHLPNLH
INEGALGLLFDIYKKVLPKAGGYLNEFGTLHTERLQLVLNELILYERENFEHICADSSWI
ESKRSSRSQSKKKAANNHLILSESQRTLLSKTEQFVKSNLHSPNKYDASLALPACYPAKD
RKFLRDLAAELNLCISFDEFNENDEPLITLAFDPDQSLPEDPAVNAVQDMLEDFQLGETT
KLDAHLSESKVEEVFKKYNQAANEPEWNENDFDQEQEKKFQKALSEWKSQYYHEKMNLDF
ADPEQLHKLAYAYTEGLQWVLHYYYDGVASWSWFYPYHYSPMISDLSNVAPYKFSFNLGQ
PFKPFEQLMGVLPELSSAHVPPAFRDLMTNSESPIIDLYPQEFETDLNGKKHDWEAIVKI
SFIDQDRLLKAMKAHEHKLLDEERRRNEFGPTWQFRYNPQTAVTYPSSLPGFFPELHNCH
SEMTVYDLPTIQGLRLIKGLCQGVLLGKDTVAGFPSLHNLPHTGTLLFHGIKVHQSESKG
ETIVLNVPNVYEGTKVEDLANTLLGSRVYVNYPFLREAKVTALSDSLFRYELDPHSQRCR
SIPHDERTLATWQRNADGIEYELSKKCGLVIGDVDVIVHAKPIKGLQRMEDGALVKEYEA
RDCDYALQTVVLKVSSVDPRFMEQSAKSITEEFPEGSKVFFLGALLYGAPGQVVGHSKDK
LNLRIMSFPTDNEENFAFRSALRAEGSSKPYIPSHVLCRRLGISGLTLSKITSSVLVLEK
PGSDSKTNIGLSMKFEAKGQKVLGLTKKGETGWEYSFEAIKLIEEYLEQFPEITQSLETR
GHDILRAQDIFPDEPEARLSAVKGWMKAKGIRDFDRVPLETDSLERGTIERFEAVTAKFL
AERTPENVKQAIIRNVPRRAILKPSHAEEQLGNQSFELADRVAMVSDRGTVPISAKGVVV
GITDKFIDVVFDAPFIGGTTLSNRCEMYRGVSIGPSTILNLTTPQYRQSITGGVPQEKAA
VKKHGQPVDTHVAGTQSAVRGRWQTDGALAGSNIVRGGPVIAIHSRGGPPPREQVGRNAV
EPGRIHGHPVTRPVEPPATSGPGAGPSWRGGMGRNGNDAAPTRGKTTGSYRGGPSGHTIL
ARPPPVQPTAPPQPGPTPKRDGPSWKERIAVIPPASRGTGRGSNGPPPNGRGNPAGRGGR
GRGRGATRG
NT seq 4350 nt   +upstreamnt  +downstreamnt
atgggtgtttctaagttttttagatggatgagcgaaagatatccctttgttctccaactg
gtcgaagaaaatcgtattcctcaatttgacaatctctacttggatatgaacggaattatt
catcactgcagtcatccgaatgaaggaagtgcacatttcagaataacggaggaagacatt
tatttggcgatattttcgtatttggagcacttgtttgcgctagccaaaccacagaaggtt
tttttcttggcggttgatggtgttgcaccacgagccaagatgaaccagcagcgttctcga
aggttcaaaacggcaaaagaaaatcaagaattgattaagaaagcgatccgaaaaggcgaa
aagcttccagataccactggtttcgacagcaactgcattactcctggcacgccgtttatg
gctcgattatctgagcagttgaaatactttatcaacaagaaggtatccgaggactctgct
tggcagtcagtccaggtaatattcagtggacacgatgtaccaggagaaggggagcataaa
atcatggaatatatccgactttctaaagcgcaggaagattacaatcccaacattcgacat
tgtgtctatggcttagatgcagatctcatcatgttgggattactatcacatgacccacac
ttttgtcttctacgagaagaagtcaagttttcggcgcagaaaagctcctcaaaaggactc
gaaaatcagaaattttacctcctccacatctctctcgttcgcgattatctagattgggaa
tttgcaagtttgcgccaggtcaagactttagattatgacctcgaacgaatcatcgacgac
ttcattctgctctgtatatttgttggaaacgattttttacctcacctgcccaatctacac
atcaacgaaggcgcactaggactgcttttcgatatctacaagaaggttttaccaaaggcg
ggaggatatttgaacgagttcggtacccttcacactgaacgattgcagctagtcttaaat
gaattgatcttgtatgagcgagagaatttcgagcatatatgcgccgactctagctggatc
gaaagtaaacgttcgtctcgtagccagtcgaaaaaaaaggcagctaacaaccacctaatt
ctaagtgagagtcaacgtactctgctttcaaaaactgaacaatttgtcaaatccaatcta
cactctccgaacaaatacgatgctagcttggcccttccagcatgttaccccgcaaaagat
agaaagtttctacgggacttggctgcggaattgaatctatgcatctcttttgacgagttt
aacgagaacgatgagcctctaatcaccttggctttcgacccggaccaatcgctgccagaa
gatccggctgtcaatgccgtacaagacatgttggaagatttccaactcggtgaaacgacc
aaacttgatgctcatttatccgaatccaaggtcgaagaagtctttaagaagtacaaccaa
gccgcaaatgagcctgaatggaacgaaaacgattttgaccaggaacaggaaaagaaattt
caaaaggcgctatccgaatggaagtcgcagtactatcacgaaaaaatgaatcttgatttt
gctgatcctgagcagctccataagctcgcctacgcctacacagagggtttacaatgggtt
ctacattactactatgacggtgttgcttcgtggagctggttctacccatatcattattct
ccaatgatttcggacttaagcaatgtggcgccatacaagttttcttttaaccttggtcaa
ccattcaaacctttcgagcaactcatgggtgttcttccagaattaagttccgcgcatgtt
ccacctgcatttcgagatttgatgacaaactcagaatctccaatcatcgatctatatcca
caagagttcgaaacggatctcaatggcaagaagcacgattgggaagcaattgttaaaatc
tctttcattgatcaagacagactcctcaaggctatgaaagctcatgagcacaagctttta
gatgaagaacgcaggaggaacgagttcggccccacttggcagtttcgttacaacccacaa
acagcggtcacctatccatcctcgttaccgggcttcttccccgaactccacaattgtcat
tcggaaatgacggtgtatgatcttccgacaatccagggattacgactgatcaaggggctt
tgtcaaggcgtcctattaggaaaagataccgttgctggcttcccttcacttcacaactta
ccccacacaggcaccttactgttccatgggatcaaagtccatcaatccgagagcaagggg
gagacgatcgtgttaaatgttccgaacgtctacgaaggtacgaaggtagaagaccttgcg
aacacgctcctcggctctcgagtttatgtgaattacccgttccttcgagaagcaaaagtt
acggcgctttcagacagtcttttcaggtatgagctcgacccgcactcgcaacgttgtcgg
tcgatccctcatgatgagcggacattggcgacctggcaacgcaacgctgacggaatcgag
tacgagctctcaaaaaagtgcggattggtcatcggcgacgtcgacgtgatcgtccatgcg
aagcccatcaaaggccttcagagaatggaggatggagctttggtcaaagaatacgaagcc
cgtgattgcgattatgcattgcaaaccgtcgtcttgaaggtctcctcagttgacccccga
ttcatggaacaaagtgccaaatctattacggaagaattccctgagggaagcaaagtgttc
ttccttggcgcattgttatatggcgctccagggcaggtagtgggacattctaaagataaa
ctgaacctacgtatcatgtcatttccgacggacaatgaagagaattttgcgtttcggagt
gcattaagagcagaaggcagctcaaagccatacatcccttcccacgtcttatgtagacgg
ctagggatcagcggattaactctgagtaagatcacttcgagtgtcttggtcctggaaaaa
ccaggtagtgatagcaagaccaacatcggcctaagtatgaaatttgaagcaaaaggccaa
aaggtactcggcttaactaagaaaggcgaaaccggatgggaatattctttcgaagctatc
aaactaatcgaagaatatctagaacaattcccggagatcacacaaagcttagagacccga
gggcacgatattcttcgagcgcaagacatcttccccgatgagccggaggcacgtctatcg
gcggtgaaaggctggatgaaagcgaagggcatccgcgatttcgaccgggtacctttggag
acggactctttagagcgggggacaatcgagcgattcgaggcggtgacggccaagttccta
gccgagcggacgccggaaaacgtcaagcaggccatcatccgcaacgtgccccgtcgggcg
atcctcaaaccctctcacgccgaggaacaactcggaaaccaatctttcgagttagccgac
cgagtcgccatggttagcgatcgcggaaccgtgcctattagcgccaagggagtcgtcgtc
gggatcacagataagtttatcgacgtcgtcttcgatgcccccttcattggtggaacgacc
ctgtcaaatcgttgtgagatgtatcgaggggtttcgataggaccgagtacgatcttgaat
ctgactacgccccaataccgtcaaagcattacgggaggagttccacaggagaaagccgcg
gtgaagaagcacggccaaccagtagacacgcacgttgcgggcactcagtcagccgttcga
ggccggtggcagacagacggggcgttggcgggcagcaacattgtgcggggaggtccggtg
atcgcgattcattcacgaggaggaccaccgccacgcgagcaggtgggccgaaacgcagtg
gagccggggcgaatccacggccacccggtcacccggcctgtggagcctccggcgacgtct
gggccgggcgccggcccttcgtggcgtggcggcatgggacgcaacggaaacgacgctgct
cctacccggggcaagaccacgggctcataccgcggcggcccatccgggcataccatcctt
gcccggcccccacccgtccagcccacggcccctccccagcctggcccgactcccaaacgc
gatggcccgtcgtggaaggagcgcatcgccgtgattcctcctgcgtctcgtgggactggt
cggggctccaacggtcctcctcccaacggccgaggtaatccggctggcagggggggtagg
ggccggggccggggcgcaactagaggatga

  All links  
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (10)   

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